ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart42h03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY177684.1| Hordeum vulgare subsp. vulgare pyrroline-5-carboxylate reductase mRNA, complete cds Length = 1023 Score = 474 bits (239), Expect = e-130 Identities = 248/251 (98%) Strand = Plus / Plus Query: 147 ttccgcctgggcttcgtcggcgcggggaacctggccgagagcatcgcgcggggcgtcgcg 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 ttccgcctgggcttcgtcggcgcggggaacctggccgagagcatcgcgcggggcgtcgcg 181 Query: 207 gcgtcgggcgtcctcccggcctccgccgtccgcaccgcgccctatcgtcgccccgagcgc 266 |||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| Sbjct: 182 gcgtcgggcgtcctcccggcctccgccgtccgcaccgcgccccaccgccgccccgagcgc 241 Query: 267 gccgccgccttcgcctccctcggcgccaccatcctcgcctccaacgcccaggtcgtcgac 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 gccgccgccttcgcctccctcggcgccaccatcctcgcctccaacgcccaggtcgtcgac 301 Query: 327 gacagcgatgtgatcgtcatctccgtcaagccccagattgtgaagcaggttctggttgag 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 gacagcgatgtgatcgtcatctccgtcaagccccagattgtgaagcaggttctggttgag 361 Query: 387 ctcaagccctt 397 ||||||||||| Sbjct: 362 ctcaagccctt 372 Score = 101 bits (51), Expect = 2e-18 Identities = 51/51 (100%) Strand = Plus / Plus Query: 46 ccaacaactccctcccccacgccgccgcaacgctcgcgtgctccagccgcc 96 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15 ccaacaactccctcccccacgccgccgcaacgctcgcgtgctccagccgcc 65
>gb|AY880317.1| Triticum aestivum pyrroline-5-carboxylate reductase mRNA, complete cds Length = 1025 Score = 426 bits (215), Expect = e-116 Identities = 242/251 (96%) Strand = Plus / Plus Query: 147 ttccgcctgggcttcgtcggcgcggggaacctggccgagagcatcgcgcggggcgtcgcg 206 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 93 ttccgcctgggcttcgtcggcgcggggaacctggccgagagcatcgcgcgcggcgtcgcg 152 Query: 207 gcgtcgggcgtcctcccggcctccgccgtccgcaccgcgccctatcgtcgccccgagcgc 266 |||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||| Sbjct: 153 gcgtcgggcgtcctcccggcctccgccgtccgcaccgctccccaccgccgccccgagcgc 212 Query: 267 gccgccgccttcgcctccctcggcgccaccatcctcgcctccaacgcccaggtcgtcgac 326 | ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 213 ggcgccgccttcgcctccctcggcgccaccatcctcgcctccaacgcccaggttgtggac 272 Query: 327 gacagcgatgtgatcgtcatctccgtcaagccccagattgtgaagcaggttctggttgag 386 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 273 ggcagcgatgtgatcgtcatctccgtcaagccccagattgtgaagcaggttctggttgag 332 Query: 387 ctcaagccctt 397 ||||||||||| Sbjct: 333 ctcaagccctt 343
>gb|DQ026301.1| Zea mays pyrroline 5-carboxylate reductase (p5cr) mRNA, complete cds Length = 1178 Score = 216 bits (109), Expect = 4e-53 Identities = 202/233 (86%) Strand = Plus / Plus Query: 147 ttccgcctgggcttcgtcggcgcggggaacctggccgagagcatcgcgcggggcgtcgcg 206 ||||| |||||||||||||||||||| |||||||||||||||||||| || ||||| ||| Sbjct: 149 ttccgtctgggcttcgtcggcgcgggcaacctggccgagagcatcgcccgcggcgtggcg 208 Query: 207 gcgtcgggcgtcctcccggcctccgccgtccgcaccgcgccctatcgtcgccccgagcgc 266 ||||||||||||||||||||||||||| |||||||||||||| | || |||||||||||| Sbjct: 209 gcgtcgggcgtcctcccggcctccgccatccgcaccgcgccccaccgccgccccgagcgc 268 Query: 267 gccgccgccttcgcctccctcggcgccaccatcctcgcctccaacgcccaggtcgtcgac 326 | || |||||||| ||| ||||||| | | ||| |||| ||||| || || ||| Sbjct: 269 ggcgaggccttcgcgtccttcggcgcgtgcttgctccaaaccaatgcccatgttgtggac 328 Query: 327 gacagcgatgtgatcgtcatctccgtcaagccccagattgtgaagcaggttct 379 |||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 329 gacagcgatgtgatcgtcatctccgtgaagcctcagatcgtgaagcaagttct 381
>ref|XM_463717.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 855 Score = 125 bits (63), Expect = 1e-25 Identities = 192/235 (81%) Strand = Plus / Plus Query: 163 tcggcgcggggaacctggccgagagcatcgcgcggggcgtcgcggcgtcgggcgtcctcc 222 ||||| |||| ||||| || ||||||||||| || ||||| ||||||||||||||||||| Sbjct: 71 tcggcccgggtaacctcgcggagagcatcgcccgcggcgtggcggcgtcgggcgtcctcc 130 Query: 223 cggcctccgccgtccgcaccgcgccctatcgtcgccccgagcgcgccgccgccttcgcct 282 ||||| |||| ||||||||||||| | || |||||||||||||||| |||||| | | Sbjct: 131 cggccaccgcgatccgcaccgcgccacaccgccgccccgagcgcgccgaggccttctcat 190 Query: 283 ccctcggcgccaccatcctcgcctccaacgcccaggtcgtcgacgacagcgatgtgatcg 342 || |||| || |||| | | ||||||| ||||| || || ||||| || ||||||| Sbjct: 191 ccatcggagctcacatcttggagaccaacgcgcaggtagttgatgacagtgacgtgatcg 250 Query: 343 tcatctccgtcaagccccagattgtgaagcaggttctggttgagctcaagccctt 397 ||||||| || ||||| ||||| || | |||||| ||||||||||| || ||||| Sbjct: 251 tcatctctgtgaagccgcagatcgtaaggcaggtactggttgagctaaaaccctt 305
>dbj|AK070184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E03, full insert sequence Length = 1210 Score = 125 bits (63), Expect = 1e-25 Identities = 192/235 (81%) Strand = Plus / Plus Query: 163 tcggcgcggggaacctggccgagagcatcgcgcggggcgtcgcggcgtcgggcgtcctcc 222 ||||| |||| ||||| || ||||||||||| || ||||| ||||||||||||||||||| Sbjct: 241 tcggcccgggtaacctcgcggagagcatcgcccgcggcgtggcggcgtcgggcgtcctcc 300 Query: 223 cggcctccgccgtccgcaccgcgccctatcgtcgccccgagcgcgccgccgccttcgcct 282 ||||| |||| ||||||||||||| | || |||||||||||||||| |||||| | | Sbjct: 301 cggccaccgcgatccgcaccgcgccacaccgccgccccgagcgcgccgaggccttctcat 360 Query: 283 ccctcggcgccaccatcctcgcctccaacgcccaggtcgtcgacgacagcgatgtgatcg 342 || |||| || |||| | | ||||||| ||||| || || ||||| || ||||||| Sbjct: 361 ccatcggagctcacatcttggagaccaacgcgcaggtagttgatgacagtgacgtgatcg 420 Query: 343 tcatctccgtcaagccccagattgtgaagcaggttctggttgagctcaagccctt 397 ||||||| || ||||| ||||| || | |||||| ||||||||||| || ||||| Sbjct: 421 tcatctctgtgaagccgcagatcgtaaggcaggtactggttgagctaaaaccctt 475
>dbj|AK067368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104L18, full insert sequence Length = 1321 Score = 125 bits (63), Expect = 1e-25 Identities = 192/235 (81%) Strand = Plus / Plus Query: 163 tcggcgcggggaacctggccgagagcatcgcgcggggcgtcgcggcgtcgggcgtcctcc 222 ||||| |||| ||||| || ||||||||||| || ||||| ||||||||||||||||||| Sbjct: 315 tcggcccgggtaacctcgcggagagcatcgctcgcggcgtggcggcgtcgggcgtcctcc 374 Query: 223 cggcctccgccgtccgcaccgcgccctatcgtcgccccgagcgcgccgccgccttcgcct 282 ||||| |||| ||||||||||||| | || |||||||||||||||| |||||| | | Sbjct: 375 cggccaccgcgatccgcaccgcgccacaccgccgccccgagcgcgccgaggccttctcat 434 Query: 283 ccctcggcgccaccatcctcgcctccaacgcccaggtcgtcgacgacagcgatgtgatcg 342 || |||| || |||| | | ||||||| ||||| || || ||||| || ||||||| Sbjct: 435 ccatcggagctcacatcttggagaccaacgcgcaggtagttgatgacagtgacgtgatcg 494 Query: 343 tcatctccgtcaagccccagattgtgaagcaggttctggttgagctcaagccctt 397 ||||||| || ||||| ||||| || | |||||| ||||||||||| || ||||| Sbjct: 495 tcatctctgtgaagccgcagatcgtaaggcaggtactggttgagctaaaaccctt 549
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 103 bits (52), Expect = 4e-19 Identities = 94/108 (87%) Strand = Plus / Minus Query: 163 tcggcgcggggaacctggccgagagcatcgcgcggggcgtcgcggcgtcgggcgtcctcc 222 ||||| |||| ||||| || ||||||||||| || ||||| ||||||||||||||||||| Sbjct: 41713343 tcggcccgggtaacctcgcggagagcatcgcccgcggcgtggcggcgtcgggcgtcctcc 41713284 Query: 223 cggcctccgccgtccgcaccgcgccctatcgtcgccccgagcgcgccg 270 ||||| |||| ||||||||||||| | || |||||||||||||||| Sbjct: 41713283 cggccaccgcgatccgcaccgcgccacaccgccgccccgagcgcgccg 41713236 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 265 gcgccgccgccttcgcctccctcggc 290 ||||||||||||||||||||| |||| Sbjct: 409016 gcgccgccgccttcgcctcccgcggc 409041 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 cccgagcgcgccgccgccttcgcc 281 ||||||| |||||||||||||||| Sbjct: 18619464 cccgagctcgccgccgccttcgcc 18619487 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 cacgccgccgcaacgctcgcgtgc 86 |||||||||||| ||||||||||| Sbjct: 9769534 cacgccgccgcagcgctcgcgtgc 9769511
>dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0466H10 Length = 176530 Score = 103 bits (52), Expect = 4e-19 Identities = 94/108 (87%) Strand = Plus / Minus Query: 163 tcggcgcggggaacctggccgagagcatcgcgcggggcgtcgcggcgtcgggcgtcctcc 222 ||||| |||| ||||| || ||||||||||| || ||||| ||||||||||||||||||| Sbjct: 128945 tcggcccgggtaacctcgcggagagcatcgcccgcggcgtggcggcgtcgggcgtcctcc 128886 Query: 223 cggcctccgccgtccgcaccgcgccctatcgtcgccccgagcgcgccg 270 ||||| |||| ||||||||||||| | || |||||||||||||||| Sbjct: 128885 cggccaccgcgatccgcaccgcgccacaccgccgccccgagcgcgccg 128838
>ref|NM_183496.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1005 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 265 gcgccgccgccttcgcctccctcggc 290 ||||||||||||||||||||| |||| Sbjct: 203 gcgccgccgccttcgcctcccgcggc 228
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 302 cgcctccaacgcccaggtcgtc 323 |||||||||||||||||||||| Sbjct: 277546 cgcctccaacgcccaggtcgtc 277525
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 266 cgccgccgccttcgcctccctc 287 |||||||||||||||||||||| Sbjct: 12277143 cgccgccgccttcgcctccctc 12277164 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 cgccttcgcctccctcggcgccacc 296 |||||||||||||||||||| |||| Sbjct: 2584793 cgccttcgcctccctcggcgacacc 2584769
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 302 cgcctccaacgcccaggtcgtc 323 |||||||||||||||||||||| Sbjct: 3402620 cgcctccaacgcccaggtcgtc 3402641 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 gcctccgccgtccgcaccgcgccc 248 ||||||||||||||| |||||||| Sbjct: 8362403 gcctccgccgtccgccccgcgccc 8362426
>dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0592B08 Length = 131096 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 266 cgccgccgccttcgcctccctc 287 |||||||||||||||||||||| Sbjct: 114165 cgccgccgccttcgcctccctc 114186
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 265 gcgccgccgccttcgcctccctcggc 290 ||||||||||||||||||||| |||| Sbjct: 160854 gcgccgccgccttcgcctcccgcggc 160879
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482C06 Length = 182779 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 265 gcgccgccgccttcgcctccctcggc 290 ||||||||||||||||||||| |||| Sbjct: 49217 gcgccgccgccttcgcctcccgcggc 49242
>dbj|AK101600.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051I20, full insert sequence Length = 1856 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 266 cgccgccgccttcgcctccctc 287 |||||||||||||||||||||| Sbjct: 236 cgccgccgccttcgcctccctc 257
>dbj|AK067233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095B21, full insert sequence Length = 2039 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 266 cgccgccgccttcgcctccctc 287 |||||||||||||||||||||| Sbjct: 220 cgccgccgccttcgcctccctc 241
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 251 tcgtcgccccgagcgcgccgccgcc 275 ||||||| ||||||||||||||||| Sbjct: 2200173 tcgtcgcgccgagcgcgccgccgcc 2200149 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 gcgtcgcggcgtcgggcgtc 218 |||||||||||||||||||| Sbjct: 2344338 gcgtcgcggcgtcgggcgtc 2344319
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 251 tcgtcgccccgagcgcgccgccgcc 275 ||||||| ||||||||||||||||| Sbjct: 3373603 tcgtcgcgccgagcgcgccgccgcc 3373579 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 gcgtcgcggcgtcgggcgtc 218 |||||||||||||||||||| Sbjct: 1152440 gcgtcgcggcgtcgggcgtc 1152459
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 cgccccgagcgcgccgccgcc 275 ||||||||||||||||||||| Sbjct: 14285572 cgccccgagcgcgccgccgcc 14285552 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 266 cgccgccgccttcgcctccctcggcgcc 293 |||||||||| |||||||||||||||| Sbjct: 34310304 cgccgccgccgccgcctccctcggcgcc 34310331 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 cccgagcgcgccgccgccttcgcc 281 ||||||| |||||||||||||||| Sbjct: 20062215 cccgagctcgccgccgccttcgcc 20062192
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 251 tcgtcgccccgagcgcgccgccgcc 275 ||||||| ||||||||||||||||| Sbjct: 3114691 tcgtcgcgccgagcgcgccgccgcc 3114667 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 gcgtcgcggcgtcgggcgtc 218 |||||||||||||||||||| Sbjct: 1033340 gcgtcgcggcgtcgggcgtc 1033359
>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02, complete sequence Length = 153623 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 192 gcgcggggcgtcgcggcgtcgggcg 216 ||||| ||||||||||||||||||| Sbjct: 124005 gcgcgtggcgtcgcggcgtcgggcg 123981
>dbj|AP001204.1| Rhodococcus equi plasmid pREAT701 DNA, complete sequence Length = 80610 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 287 cggcgccaccatcctcgcctccaac 311 ||||||||||||| ||||||||||| Sbjct: 49542 cggcgccaccatcgtcgcctccaac 49518
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 cgccccgagcgcgccgccgcc 275 ||||||||||||||||||||| Sbjct: 34801 cgccccgagcgcgccgccgcc 34781
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 cgccccgagcgcgccgccgcc 275 ||||||||||||||||||||| Sbjct: 96960 cgccccgagcgcgccgccgcc 96940
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 192 gcgcggggcgtcgcggcgtcgggcg 216 ||||| ||||||||||||||||||| Sbjct: 33773562 gcgcgtggcgtcgcggcgtcgggcg 33773538
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 ctccctcccccacgccgccgc 73 ||||||||||||||||||||| Sbjct: 13103376 ctccctcccccacgccgccgc 13103356 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 cgccgccgccttcgcctccct 286 ||||||||||||||||||||| Sbjct: 3556009 cgccgccgccttcgcctccct 3556029
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 cgccccgagcgcgccgccgcc 275 ||||||||||||||||||||| Sbjct: 14280547 cgccccgagcgcgccgccgcc 14280527 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 266 cgccgccgccttcgcctccctcggcgcc 293 |||||||||| |||||||||||||||| Sbjct: 34400776 cgccgccgccgccgcctccctcggcgcc 34400803 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 cccgagcgcgccgccgccttcgcc 281 ||||||| |||||||||||||||| Sbjct: 20055243 cccgagctcgccgccgccttcgcc 20055220
>gb|AF116907.2|AF116907 Rhodococcus equi virulence plasmid, complete sequence Length = 80609 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 287 cggcgccaccatcctcgcctccaac 311 ||||||||||||| ||||||||||| Sbjct: 49541 cggcgccaccatcgtcgcctccaac 49517
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 cgctcgcgtgctccagccgcc 96 ||||||||||||||||||||| Sbjct: 737206 cgctcgcgtgctccagccgcc 737186
>dbj|AP005571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1451_A02 Length = 135861 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 cgccgccgccttcgcctccct 286 ||||||||||||||||||||| Sbjct: 108897 cgccgccgccttcgcctccct 108917
>dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710H01 Length = 187107 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 272 cgccttcgcctccctcggcgccacc 296 |||||||||||||||||||| |||| Sbjct: 40134 cgccttcgcctccctcggcgacacc 40110
>dbj|AP005587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0499G10 Length = 158375 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 cgccgccgccttcgcctccct 286 ||||||||||||||||||||| Sbjct: 41784 cgccgccgccttcgcctccct 41804
>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0048A13 Length = 137680 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 ctccctcccccacgccgccgc 73 ||||||||||||||||||||| Sbjct: 25466 ctccctcccccacgccgccgc 25446
>dbj|AK068890.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002O16, full insert sequence Length = 1042 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 272 cgccttcgcctccctcggcgccacc 296 |||||||||||||||||||| |||| Sbjct: 357 cgccttcgcctccctcggcgacacc 381
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 tcgtcgccccgagcgcgccgccgcc 275 ||||||| ||||||||||||||||| Sbjct: 1772877 tcgtcgcgccgagcgcgccgccgcc 1772901
>dbj|AB008227.1| Adiantum capillus-veneris AcExt1 mRNA for Extensin, complete cds Length = 888 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 268 ccgccgccttcgcctccctcggcgccacc 296 ||||||||||||| ||||||| ||||||| Sbjct: 570 ccgccgccttcgcatccctcgccgccacc 598
>ref|NM_188105.1| Oryza sativa (japonica cultivar-group), Ozsa8537 predicted mRNA Length = 1089 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 cacgccgccgcaacgctcgcgtgc 86 |||||||||||| ||||||||||| Sbjct: 823 cacgccgccgcagcgctcgcgtgc 846
>ref|NM_185150.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2592 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 266 cgccgccgccttcgcctccctcggcgcc 293 |||||||||| |||||||||||||||| Sbjct: 171 cgccgccgccgccgcctccctcggcgcc 144
>ref|NM_193664.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 966 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 cccgagcgcgccgccgccttcgcc 281 ||||||| |||||||||||||||| Sbjct: 880 cccgagctcgccgccgccttcgcc 903
>gb|BT017864.1| Zea mays clone EL01N0512A05.c mRNA sequence Length = 1184 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 cgccttcgcctccctcggcg 291 |||||||||||||||||||| Sbjct: 345 cgccttcgcctccctcggcg 364
>gb|AC084767.11| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0057P11 map R606A, complete sequence Length = 163580 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 cccgagcgcgccgccgccttcgcc 281 ||||||| |||||||||||||||| Sbjct: 69798 cccgagctcgccgccgccttcgcc 69821
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 tcgcgcggggcgtcgcggcg 209 |||||||||||||||||||| Sbjct: 2752226 tcgcgcggggcgtcgcggcg 2752207
>gb|AE009166.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 192 of 256 of the complete sequence Length = 10543 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 agcgcgccgccgccttcgcc 281 |||||||||||||||||||| Sbjct: 8580 agcgcgccgccgccttcgcc 8561
>ref|XM_534270.2| PREDICTED: Canis familiaris similar to centrosome protein Cep63 (LOC477075), mRNA Length = 2271 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ccggcctccgccgtccgcac 241 |||||||||||||||||||| Sbjct: 90 ccggcctccgccgtccgcac 71
>emb|CR956362.5| Pig DNA sequence from clone CH242-98D1 on chromosome 17, complete sequence Length = 212503 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gccgccttcgcctccctcgg 289 |||||||||||||||||||| Sbjct: 153368 gccgccttcgcctccctcgg 153349
>gb|BT016096.1| Drosophila melanogaster LD35741 full insert cDNA Length = 3141 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atcctcgcctccaacgccca 316 |||||||||||||||||||| Sbjct: 2247 atcctcgcctccaacgccca 2266
>emb|X78421.1|DME2F D.melanogaster E2F mRNA Length = 4526 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atcctcgcctccaacgccca 316 |||||||||||||||||||| Sbjct: 2597 atcctcgcctccaacgccca 2616
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16 Length = 346879 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 agcgcgccgccgccttcgcc 281 |||||||||||||||||||| Sbjct: 170858 agcgcgccgccgccttcgcc 170839
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 tcgcgcggggcgtcgcggcg 209 |||||||||||||||||||| Sbjct: 932719 tcgcgcggggcgtcgcggcg 932700
>dbj|AP004611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1005_B10 Length = 142680 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 cccgagcgcgccgccgccttcgcc 281 ||||||| |||||||||||||||| Sbjct: 6910 cccgagctcgccgccgccttcgcc 6933
>ref|NM_169962.1| Drosophila melanogaster E2F transcription factor CG6376-RC, transcript variant C (E2f), mRNA Length = 4389 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atcctcgcctccaacgccca 316 |||||||||||||||||||| Sbjct: 2449 atcctcgcctccaacgccca 2468
>ref|NM_169961.1| Drosophila melanogaster E2F transcription factor CG6376-RB, transcript variant B (E2f), mRNA Length = 4187 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atcctcgcctccaacgccca 316 |||||||||||||||||||| Sbjct: 2247 atcctcgcctccaacgccca 2266
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 cctccctcggcgccaccatc 299 |||||||||||||||||||| Sbjct: 2640477 cctccctcggcgccaccatc 2640496
>ref|NM_079713.2| Drosophila melanogaster E2F transcription factor CG6376-RA, transcript variant A (E2f), mRNA Length = 4926 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atcctcgcctccaacgccca 316 |||||||||||||||||||| Sbjct: 2986 atcctcgcctccaacgccca 3005
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 agcgcgccgccgccttcgcc 281 |||||||||||||||||||| Sbjct: 2132321 agcgcgccgccgccttcgcc 2132302
>gb|AC008090.3|AC008090 Drosophila melanogaster, chromosome 3R, region 93E-93F, BAC clone BACR16N15, complete sequence Length = 172390 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 atcctcgcctccaacgccca 316 |||||||||||||||||||| Sbjct: 34303 atcctcgcctccaacgccca 34284
>gb|AC006936.17|AC006936 Drosophila melanogaster, chromosome 3R, region 93E4-93E7, BAC clone BACR48I01, complete sequence Length = 170535 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 atcctcgcctccaacgccca 316 |||||||||||||||||||| Sbjct: 157227 atcctcgcctccaacgccca 157208
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 tcgcgcggggcgtcgcggcg 209 |||||||||||||||||||| Sbjct: 1196547 tcgcgcggggcgtcgcggcg 1196566
>gb|BC014752.1| Mus musculus proteasome (prosome, macropain) subunit, alpha type 7, mRNA (cDNA clone IMAGE:4218885), with apparent retained intron Length = 1572 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 cggcctccgccgtccgcaccgcgc 246 ||||||||||||||||| |||||| Sbjct: 405 cggcctccgccgtccgcgccgcgc 382
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cgccgccgccttcgcctccc 285 |||||||||||||||||||| Sbjct: 14389093 cgccgccgccttcgcctccc 14389112
>gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0075H14, complete sequence Length = 155420 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cgccgccgccttcgcctccc 285 |||||||||||||||||||| Sbjct: 3456 cgccgccgccttcgcctccc 3475
>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13, complete sequence Length = 138245 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cgccgccgccttcgcctccc 285 |||||||||||||||||||| Sbjct: 136368 cgccgccgccttcgcctccc 136387
>gb|AY069149.2| Drosophila melanogaster GH16721 full insert cDNA Length = 3820 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atcctcgcctccaacgccca 316 |||||||||||||||||||| Sbjct: 2939 atcctcgcctccaacgccca 2958
>gb|AC061965.16| Homo sapiens chromosome 15, clone RP11-37J13, complete sequence Length = 169399 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 gtcaagccccagattgtgaa 370 |||||||||||||||||||| Sbjct: 29269 gtcaagccccagattgtgaa 29288
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 266 cgccgccgccttcgcctccctcggcgcc 293 |||||||||| |||||||||||||||| Sbjct: 24694 cgccgccgccgccgcctccctcggcgcc 24667
>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025D05 Length = 145684 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 cacgccgccgcaacgctcgcgtgc 86 |||||||||||| ||||||||||| Sbjct: 33784 cacgccgccgcagcgctcgcgtgc 33761
>dbj|AP003276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0516D04 Length = 140491 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 cccgagcgcgccgccgccttcgcc 281 ||||||| |||||||||||||||| Sbjct: 42737 cccgagctcgccgccgccttcgcc 42760
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gtcgccccgagcgcgccgcc 272 |||||||||||||||||||| Sbjct: 67373 gtcgccccgagcgcgccgcc 67354
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gggcgtcgcggcgtcgggcg 216 |||||||||||||||||||| Sbjct: 2682036 gggcgtcgcggcgtcgggcg 2682055
>gb|AY109270.1| Zea mays PCO088979 mRNA sequence Length = 1193 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 cgccttcgcctccctcggcg 291 |||||||||||||||||||| Sbjct: 360 cgccttcgcctccctcggcg 379
>gb|AE003735.2| Drosophila melanogaster chromosome 3R, section 73 of 118 of the complete sequence Length = 255463 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 atcctcgcctccaacgccca 316 |||||||||||||||||||| Sbjct: 159064 atcctcgcctccaacgccca 159045
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 cctgggcttcgtcggcgcgg 171 |||||||||||||||||||| Sbjct: 393677 cctgggcttcgtcggcgcgg 393658
>emb|BX323833.4| Pig DNA sequence from clone XX-554F3, complete sequence Length = 121483 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 actccctcccccacgccgcc 71 |||||||||||||||||||| Sbjct: 49575 actccctcccccacgccgcc 49556
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cgccgccgccttcgcctccc 285 |||||||||||||||||||| Sbjct: 14397335 cgccgccgccttcgcctccc 14397354
>emb|AL663067.14| Mouse DNA sequence from clone RP23-23G3 on chromosome 2, complete sequence Length = 193057 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 cggcctccgccgtccgcaccgcgc 246 ||||||||||||||||| |||||| Sbjct: 162865 cggcctccgccgtccgcgccgcgc 162888
>dbj|AB047329.1| Rubella virus (TO-336 vaccine) genomic RNA, complete genome Length = 9762 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 tcgcgcggggcgtcgcggcg 209 |||||||||||||||||||| Sbjct: 1557 tcgcgcggggcgtcgcggcg 1538
>gb|U10184.1|DMU10184 Drosophila melanogaster drosE2F1 protein (drosE2F1) gene, complete cds Length = 4378 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atcctcgcctccaacgccca 316 |||||||||||||||||||| Sbjct: 2444 atcctcgcctccaacgccca 2463
>dbj|AB011813.1| Drosophila melanogaster genes for DNA polymerase alpha 180K subunit, E2F, complete cds Length = 65114 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atcctcgcctccaacgccca 316 |||||||||||||||||||| Sbjct: 56373 atcctcgcctccaacgccca 56392 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,232,587 Number of Sequences: 3902068 Number of extensions: 2232587 Number of successful extensions: 59899 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56052 Number of HSP's gapped (non-prelim): 3847 length of query: 397 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 375 effective length of database: 17,147,199,772 effective search space: 6430199914500 effective search space used: 6430199914500 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
