ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart42h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK109657.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 3e-73
2emb|AM261084.1| Oryza sativa (indica cultivar-group) mRNA for pu... 280 5e-72
3gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome... 149 1e-32
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
5dbj|AK101516.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 149 1e-32
7emb|AL359642.12| Human DNA sequence from clone RP11-507F17 on ch... 46 0.12
8gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 46 0.12
9ref|XM_233422.3| PREDICTED: Rattus norvegicus forkhead box D2 (p... 46 0.12
10emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 44 0.47
11gb|CP000088.1| Thermobifida fusca YX, complete genome 44 0.47
12gb|AE012073.1| Xanthomonas axonopodis pv. citri str. 306, secti... 44 0.47
13gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.9
14gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.9
15gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.9
16gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 42 1.9
17gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.9
18emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.9
19emb|AJ457205.1|UBA457205 Uncultured bacterium partial nirS gene ... 42 1.9
20emb|AJ457199.1|UBA457199 Uncultured bacterium partial nirS gene ... 42 1.9
21emb|AJ457195.1|UBA457195 Uncultured bacterium partial nirS gene ... 42 1.9
22gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.9
23gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 1.9
24ref|NM_210976.1| Eremothecium gossypii AFR075Cp (AFR075C), mRNA 42 1.9
25emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.9
26gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.9
27gb|CP000097.1| Synechococcus sp. CC9902, complete genome 40 7.3
28ref|XM_748377.1| Aspergillus fumigatus Af293 cytoplasmic dynein ... 40 7.3
29gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 7.3
30emb|AL355362.7| Human DNA sequence from clone RP3-480M22 on chro... 40 7.3
31emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 40 7.3
32gb|AE011635.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 7.3
33ref|NM_135437.3| Drosophila melanogaster CG3748-RB, transcript v... 40 7.3
34gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 7.3
35gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.3
36gb|AC092492.1|AC092492 Drosophila melanogaster, chromosome 2L, r... 40 7.3
37gb|AC092122.5| Homo sapiens chromosome 16 clone RP11-102F12, com... 40 7.3
38gb|AC136601.2| Homo sapiens chromosome 5 clone RP11-1259L22, com... 40 7.3
39gb|AC006987.2|AC006987 Homo sapiens BAC clone RP11-160K17 from Y... 40 7.3
40dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.3
41gb|AY075281.1| Drosophila melanogaster AT30262 full insert cDNA 40 7.3
42dbj|AB116234.1| Streptomyces venezuelae papA, papC, papB, ORFIV ... 40 7.3
43gb|AE003624.3| Drosophila melanogaster chromosome 2L, section 33... 40 7.3
44gb|AC005125.1|AC005125 Drosophila melanogaster, chromosome 2L, r... 40 7.3
45dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 7.3
46emb|AL844552.4| Mouse DNA sequence from clone RP23-265N10 on chr... 40 7.3
47gb|AC093290.4| Homo sapiens chromosome 5 clone RP11-47L17, compl... 40 7.3 
>dbj|AK109657.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F06, full
           insert sequence
          Length = 1206

 Score =  283 bits (143), Expect = 3e-73
 Identities = 256/294 (87%)
 Strand = Plus / Plus

                                                                       
Query: 248 gggggcacgcgctcggagtggtctccctcgctgcgcatcccgccggggtcatagccgccg 307
           |||| ||||||||||| ||||| || ||||| || || ||||| || | | | |||||||
Sbjct: 289 ggggccacgcgctcggggtggtgtcgctcgccgcccaccccgcgggcgccgtcgccgccg 348

                                                                       
Query: 308 cggtctccatcgacagccacatccgcgtcttcgacgtcgactccggcgcctccgtcacca 367
           | |||||| |||||||| || ||||||||||||| || ||||| ||| |||||||| |||
Sbjct: 349 ccgtctccctcgacagctacgtccgcgtcttcgatgtggactcgggctcctccgtcgcca 408

                                                                       
Query: 368 cgctcgatgccgcgccctccgaggtctggggcgtccagttccaccccaagggtattgctc 427
           ||||||| ||| | |||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 409 cgctcgaggcccctccctccgaggtctggggcatccagttccaccccaagggtagtgctc 468

                                                                       
Query: 428 tggctgcagctggtggtggcagtggatcagtaaaactgtgggacacggagaagtggcaac 487
           ||||||||||||||||||||||||||||||| || || |||||||| ||||||||| | |
Sbjct: 469 tggctgcagctggtggtggcagtggatcagtgaagctctgggacacagagaagtggaagc 528

                                                                 
Query: 488 ctattgccagccttcctgttccccgtccagagggagctcgccccgatnaaacag 541
           | ||| |||||||| ||||||| |||||||||||||||||||| ||| ||||||
Sbjct: 529 caattaccagccttgctgttccgcgtccagagggagctcgccctgataaaacag 582



 Score =  145 bits (73), Expect = 2e-31
 Identities = 118/133 (88%)
 Strand = Plus / Plus

                                                                       
Query: 72  gatgaagcttgcggggttcaagtcggtggacggggctcacgaggactcgatctgggcggc 131
           ||||||||| |||||| ||||||||||||||||||| |||||||| || |||||||||||
Sbjct: 110 gatgaagctcgcggggctcaagtcggtggacggggcccacgaggagtccatctgggcggc 169

                                                                       
Query: 132 cgcctgggtgcccgctgctgaccaccgccccacggcgctgctcctcaccggctcgatcga 191
            || ||||||||||| || |||||||||||| ||||||||||||| || ||| |  ||||
Sbjct: 170 ggcgtgggtgcccgcggcggaccaccgccccgcggcgctgctcctgacgggcgccctcga 229

                        
Query: 192 cgagaccgtccgc 204
           |||||||||||||
Sbjct: 230 cgagaccgtccgc 242
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>emb|AM261084.1| Oryza sativa (indica cultivar-group) mRNA for putative meiotic
           recombination protein REC14 (rec14 gene), clone 14-2
          Length = 1077

 Score =  280 bits (141), Expect = 5e-72
 Identities = 215/240 (89%)
 Strand = Plus / Plus

                                                                       
Query: 302 ccgccgcggtctccatcgacagccacatccgcgtcttcgacgtcgactccggcgcctccg 361
           ||||||| |||||| |||||||| || ||||||||||||| || ||||| ||| ||||||
Sbjct: 195 ccgccgccgtctccctcgacagctacgtccgcgtcttcgatgtggactcgggctcctccg 254

                                                                       
Query: 362 tcaccacgctcgatgccgcgccctccgaggtctggggcgtccagttccaccccaagggta 421
           || |||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 255 tcgccacgctcgaggccccgccctccgaggtctggggcatccagttccaccccaagggta 314

                                                                       
Query: 422 ttgctctggctgcagctggtggtggcagtggatcagtaaaactgtgggacacggagaagt 481
            |||||||||||||||||||||||||||||||||||| || || |||||||| |||||||
Sbjct: 315 gtgctctggctgcagctggtggtggcagtggatcagtgaagctctgggacacagagaagt 374

                                                                       
Query: 482 ggcaacctattgccagccttcctgttccccgtccagagggagctcgccccgatnaaacag 541
           || | || ||| |||||||| ||||||| |||||||||||||||||||| ||| ||||||
Sbjct: 375 ggaagccaattaccagccttgctgttccgcgtccagagggagctcgccctgataaaacag 434



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 72  gatgaagcttgcggggttcaagtcggtggacggggctcacgag 114
           ||||||||| |||||  ||||||||||||||||||| ||||||
Sbjct: 118 gatgaagctcgcgggactcaagtcggtggacggggcccacgag 160
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>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0682E05,
              complete sequence
          Length = 162223

 Score =  149 bits (75), Expect = 1e-32
 Identities = 113/126 (89%)
 Strand = Plus / Plus

                                                                          
Query: 416    agggtattgctctggctgcagctggtggtggcagtggatcagtaaaactgtgggacacgg 475
              |||||| |||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 125291 agggtagtgctctggctgcagctggtggtggcagtggatcagtgaagctctgggacacag 125350

                                                                          
Query: 476    agaagtggcaacctattgccagccttcctgttccccgtccagagggagctcgccccgatn 535
              |||||||| | || ||| |||||||| ||||||| |||||||||||||||||||| ||| 
Sbjct: 125351 agaagtggaagccaattaccagccttgctgttccgcgtccagagggagctcgccctgata 125410

                    
Query: 536    aaacag 541
              ||||||
Sbjct: 125411 aaacag 125416



 Score =  145 bits (73), Expect = 2e-31
 Identities = 118/133 (88%)
 Strand = Plus / Plus

                                                                          
Query: 72     gatgaagcttgcggggttcaagtcggtggacggggctcacgaggactcgatctgggcggc 131
              ||||||||| |||||| ||||||||||||||||||| |||||||| || |||||||||||
Sbjct: 123583 gatgaagctcgcggggctcaagtcggtggacggggcccacgaggagtccatctgggcggc 123642

                                                                          
Query: 132    cgcctgggtgcccgctgctgaccaccgccccacggcgctgctcctcaccggctcgatcga 191
               || ||||||||||| || |||||||||||| ||||||||||||| || ||| |  ||||
Sbjct: 123643 ggcgtgggtgcccgcggcggaccaccgccccgcggcgctgctcctgacgggcgccctcga 123702

                           
Query: 192    cgagaccgtccgc 204
              |||||||||||||
Sbjct: 123703 cgagaccgtccgc 123715



 Score =  141 bits (71), Expect = 3e-30
 Identities = 146/171 (85%)
 Strand = Plus / Plus

                                                                          
Query: 248    gggggcacgcgctcggagtggtctccctcgctgcgcatcccgccggggtcatagccgccg 307
              |||| ||||||||||| ||||| || ||||| || || ||||| || | | | |||||||
Sbjct: 123762 ggggccacgcgctcggggtggtgtcgctcgccgcccaccccgcgggcgccgtcgccgccg 123821

                                                                          
Query: 308    cggtctccatcgacagccacatccgcgtcttcgacgtcgactccggcgcctccgtcacca 367
              | |||||| |||||||| || ||||||||||||| || ||||| ||| |||||||| |||
Sbjct: 123822 ccgtctccctcgacagctacgtccgcgtcttcgatgtggactcgggctcctccgtcgcca 123881

                                                                 
Query: 368    cgctcgatgccgcgccctccgaggtctggggcgtccagttccaccccaagg 418
              ||||||| ||| | |||||||||||||||||| ||||||||||||||||||
Sbjct: 123882 cgctcgaggcccctccctccgaggtctggggcatccagttccaccccaagg 123932
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  149 bits (75), Expect = 1e-32
 Identities = 113/126 (89%)
 Strand = Plus / Plus

                                                                            
Query: 416      agggtattgctctggctgcagctggtggtggcagtggatcagtaaaactgtgggacacgg 475
                |||||| |||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 25635244 agggtagtgctctggctgcagctggtggtggcagtggatcagtgaagctctgggacacag 25635303

                                                                            
Query: 476      agaagtggcaacctattgccagccttcctgttccccgtccagagggagctcgccccgatn 535
                |||||||| | || ||| |||||||| ||||||| |||||||||||||||||||| ||| 
Sbjct: 25635304 agaagtggaagccaattaccagccttgctgttccgcgtccagagggagctcgccctgata 25635363

                      
Query: 536      aaacag 541
                ||||||
Sbjct: 25635364 aaacag 25635369



 Score =  145 bits (73), Expect = 2e-31
 Identities = 118/133 (88%)
 Strand = Plus / Plus

                                                                            
Query: 72       gatgaagcttgcggggttcaagtcggtggacggggctcacgaggactcgatctgggcggc 131
                ||||||||| |||||| ||||||||||||||||||| |||||||| || |||||||||||
Sbjct: 25633536 gatgaagctcgcggggctcaagtcggtggacggggcccacgaggagtccatctgggcggc 25633595

                                                                            
Query: 132      cgcctgggtgcccgctgctgaccaccgccccacggcgctgctcctcaccggctcgatcga 191
                 || ||||||||||| || |||||||||||| ||||||||||||| || ||| |  ||||
Sbjct: 25633596 ggcgtgggtgcccgcggcggaccaccgccccgcggcgctgctcctgacgggcgccctcga 25633655

                             
Query: 192      cgagaccgtccgc 204
                |||||||||||||
Sbjct: 25633656 cgagaccgtccgc 25633668



 Score =  141 bits (71), Expect = 3e-30
 Identities = 146/171 (85%)
 Strand = Plus / Plus

                                                                            
Query: 248      gggggcacgcgctcggagtggtctccctcgctgcgcatcccgccggggtcatagccgccg 307
                |||| ||||||||||| ||||| || ||||| || || ||||| || | | | |||||||
Sbjct: 25633715 ggggccacgcgctcggggtggtgtcgctcgccgcccaccccgcgggcgccgtcgccgccg 25633774

                                                                            
Query: 308      cggtctccatcgacagccacatccgcgtcttcgacgtcgactccggcgcctccgtcacca 367
                | |||||| |||||||| || ||||||||||||| || ||||| ||| |||||||| |||
Sbjct: 25633775 ccgtctccctcgacagctacgtccgcgtcttcgatgtggactcgggctcctccgtcgcca 25633834

                                                                   
Query: 368      cgctcgatgccgcgccctccgaggtctggggcgtccagttccaccccaagg 418
                ||||||| ||| | |||||||||||||||||| ||||||||||||||||||
Sbjct: 25633835 cgctcgaggcccctccctccgaggtctggggcatccagttccaccccaagg 25633885
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>dbj|AK101516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046G03, full
            insert sequence
          Length = 4213

 Score =  149 bits (75), Expect = 1e-32
 Identities = 113/126 (89%)
 Strand = Plus / Minus

                                                                        
Query: 416  agggtattgctctggctgcagctggtggtggcagtggatcagtaaaactgtgggacacgg 475
            |||||| |||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 3801 agggtagtgctctggctgcagctggtggtggcagtggatcagtgaagctctgggacacag 3742

                                                                        
Query: 476  agaagtggcaacctattgccagccttcctgttccccgtccagagggagctcgccccgatn 535
            |||||||| | || ||| |||||||| ||||||| |||||||||||||||||||| ||| 
Sbjct: 3741 agaagtggaagccaattaccagccttgctgttccgcgtccagagggagctcgccctgata 3682

                  
Query: 536  aaacag 541
            ||||||
Sbjct: 3681 aaacag 3676
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  149 bits (75), Expect = 1e-32
 Identities = 113/126 (89%)
 Strand = Plus / Plus

                                                                            
Query: 416      agggtattgctctggctgcagctggtggtggcagtggatcagtaaaactgtgggacacgg 475
                |||||| |||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 25953914 agggtagtgctctggctgcagctggtggtggcagtggatcagtgaagctctgggacacag 25953973

                                                                            
Query: 476      agaagtggcaacctattgccagccttcctgttccccgtccagagggagctcgccccgatn 535
                |||||||| | || ||| |||||||| ||||||| |||||||||||||||||||| ||| 
Sbjct: 25953974 agaagtggaagccaattaccagccttgctgttccgcgtccagagggagctcgccctgata 25954033

                      
Query: 536      aaacag 541
                ||||||
Sbjct: 25954034 aaacag 25954039



 Score =  145 bits (73), Expect = 2e-31
 Identities = 118/133 (88%)
 Strand = Plus / Plus

                                                                            
Query: 72       gatgaagcttgcggggttcaagtcggtggacggggctcacgaggactcgatctgggcggc 131
                ||||||||| |||||| ||||||||||||||||||| |||||||| || |||||||||||
Sbjct: 25952206 gatgaagctcgcggggctcaagtcggtggacggggcccacgaggagtccatctgggcggc 25952265

                                                                            
Query: 132      cgcctgggtgcccgctgctgaccaccgccccacggcgctgctcctcaccggctcgatcga 191
                 || ||||||||||| || |||||||||||| ||||||||||||| || ||| |  ||||
Sbjct: 25952266 ggcgtgggtgcccgcggcggaccaccgccccgcggcgctgctcctgacgggcgccctcga 25952325

                             
Query: 192      cgagaccgtccgc 204
                |||||||||||||
Sbjct: 25952326 cgagaccgtccgc 25952338



 Score =  141 bits (71), Expect = 3e-30
 Identities = 146/171 (85%)
 Strand = Plus / Plus

                                                                            
Query: 248      gggggcacgcgctcggagtggtctccctcgctgcgcatcccgccggggtcatagccgccg 307
                |||| ||||||||||| ||||| || ||||| || || ||||| || | | | |||||||
Sbjct: 25952385 ggggccacgcgctcggggtggtgtcgctcgccgcccaccccgcgggcgccgtcgccgccg 25952444

                                                                            
Query: 308      cggtctccatcgacagccacatccgcgtcttcgacgtcgactccggcgcctccgtcacca 367
                | |||||| |||||||| || ||||||||||||| || ||||| ||| |||||||| |||
Sbjct: 25952445 ccgtctccctcgacagctacgtccgcgtcttcgatgtggactcgggctcctccgtcgcca 25952504

                                                                   
Query: 368      cgctcgatgccgcgccctccgaggtctggggcgtccagttccaccccaagg 418
                ||||||| ||| | |||||||||||||||||| ||||||||||||||||||
Sbjct: 25952505 cgctcgaggcccctccctccgaggtctggggcatccagttccaccccaagg 25952555
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>emb|AL359642.12| Human DNA sequence from clone RP11-507F17 on chromosome 9 Contains a
             kertain pseudogene, complete sequence
          Length = 122613

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 421   attgctctggctgcagctggtgg 443
             |||||||||||||||||||||||
Sbjct: 13178 attgctctggctgcagctggtgg 13200
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 210     gcagcccgacgatctcgccgtcg 232
               |||||||||||||||||||||||
Sbjct: 3402805 gcagcccgacgatctcgccgtcg 3402827



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 215     ccgacgatctcgccgtcgcg 234
               ||||||||||||||||||||
Sbjct: 2322747 ccgacgatctcgccgtcgcg 2322766
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>ref|XM_233422.3| PREDICTED: Rattus norvegicus forkhead box D2 (predicted)
           (Foxd2_predicted), mRNA
          Length = 3373

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 430 gctgcagctggtggtggcagtgg 452
           |||||||||||||||||||||||
Sbjct: 274 gctgcagctggtggtggcagtgg 252
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 393     ctggggcgtccagttccacccc 414
               ||||||||||||||||||||||
Sbjct: 4967203 ctggggcgtccagttccacccc 4967224
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 393     ctggggcgtccagttccacccc 414
               ||||||||||||||||||||||
Sbjct: 1939346 ctggggcgtccagttccacccc 1939325
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>gb|AE012073.1| Xanthomonas axonopodis pv. citri str. 306,  section 451 of 469 of the
            complete genome
          Length = 11201

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 393  ctggggcgtccagttccacccc 414
            ||||||||||||||||||||||
Sbjct: 9885 ctggggcgtccagttccacccc 9906
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 210     gcagcccgacgatctcgccgtcgcg 234
               ||||||||||||||||||| |||||
Sbjct: 1086135 gcagcccgacgatctcgccttcgcg 1086111
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 210     gcagcccgacgatctcgccgtcgcg 234
               ||||||||||||||||||| |||||
Sbjct: 2829963 gcagcccgacgatctcgccctcgcg 2829987
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 210    gcagcccgacgatctcgccgtcgcg 234
              ||||||||||||||||||| |||||
Sbjct: 786443 gcagcccgacgatctcgccttcgcg 786419
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 390     ggtctggggcgtccagttccacccc 414
               ||||||||| |||||||||||||||
Sbjct: 2610863 ggtctggggggtccagttccacccc 2610839
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 210     gcagcccgacgatctcgccgtcgcg 234
               ||||| |||||||||||||||||||
Sbjct: 3907961 gcagcgcgacgatctcgccgtcgcg 3907985



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 210     gcagcccgacgatctcgccgtcgcg 234
               ||||||||||||||||||| |||||
Sbjct: 1306574 gcagcccgacgatctcgccttcgcg 1306550
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 210     gcagcccgacgatctcgccgtcgcg 234
               ||||| |||||||||||||||||||
Sbjct: 3649773 gcagcgcgacgatctcgccgtcgcg 3649797



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 210     gcagcccgacgatctcgccgtcgcg 234
               ||||||||||||||||||| |||||
Sbjct: 1210680 gcagcccgacgatctcgccttcgcg 1210656
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>emb|AJ457205.1|UBA457205 Uncultured bacterium partial nirS gene for putative nitrite
           reductase, clone BS1295
          Length = 839

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 362 tcaccacgctcgatgccgcgc 382
           |||||||||||||||||||||
Sbjct: 202 tcaccacgctcgatgccgcgc 222
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>emb|AJ457199.1|UBA457199 Uncultured bacterium partial nirS gene for putative nitrite
           reductase, clone BS1282
          Length = 839

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 362 tcaccacgctcgatgccgcgc 382
           |||||||||||||||||||||
Sbjct: 202 tcaccacgctcgatgccgcgc 222
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>emb|AJ457195.1|UBA457195 Uncultured bacterium partial nirS gene for putative nitrite
           reductase, clone BS1266
          Length = 839

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 362 tcaccacgctcgatgccgcgc 382
           |||||||||||||||||||||
Sbjct: 202 tcaccacgctcgatgccgcgc 222
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 348    ctccggcgcctccgtcaccac 368
              |||||||||||||||||||||
Sbjct: 563307 ctccggcgcctccgtcaccac 563327
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 210    gcagcccgacgatctcgccgtcgcg 234
              ||||| |||||||||||||||||||
Sbjct: 534112 gcagcgcgacgatctcgccgtcgcg 534088
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>ref|NM_210976.1| Eremothecium gossypii AFR075Cp (AFR075C), mRNA
          Length = 2223

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 348 ctccggcgcctccgtcaccac 368
           |||||||||||||||||||||
Sbjct: 438 ctccggcgcctccgtcaccac 418
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 359    ccgtcaccacgctcgatgccg 379
              |||||||||||||||||||||
Sbjct: 980921 ccgtcaccacgctcgatgccg 980941
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 210     gcagcccgacgatctcgccgtcgcg 234
               ||||| |||||||||||||||||||
Sbjct: 3354102 gcagcgcgacgatctcgccgtcgcg 3354126
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>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 173     tcctcaccggctcgatcgac 192
               ||||||||||||||||||||
Sbjct: 1374533 tcctcaccggctcgatcgac 1374514
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>ref|XM_748377.1| Aspergillus fumigatus Af293 cytoplasmic dynein heavy chain
           (Afu5g11810) partial mRNA
          Length = 13107

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 gcggtctccatcgacagcca 326
           ||||||||||||||||||||
Sbjct: 986 gcggtctccatcgacagcca 967
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 215     ccgacgatctcgccgtcgcg 234
               ||||||||||||||||||||
Sbjct: 3712008 ccgacgatctcgccgtcgcg 3711989
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>emb|AL355362.7| Human DNA sequence from clone RP3-480M22 on chromosome 6 Contains the
             5' end of the gene for p53-induced protein PIGPC1 (PERP)
             and a CpG island, complete sequence
          Length = 23812

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   ctgctgaccaccgccccacg 165
             ||||||||||||||||||||
Sbjct: 12434 ctgctgaccaccgccccacg 12415
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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   cccgacgatctcgccgtcgc 233
             ||||||||||||||||||||
Sbjct: 90842 cccgacgatctcgccgtcgc 90861
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>gb|AE011635.1| Xanthomonas axonopodis pv. citri str. 306,  section 13 of 469 of the
            complete genome
          Length = 11848

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  cctcaccggctcgatcgacg 193
            ||||||||||||||||||||
Sbjct: 2162 cctcaccggctcgatcgacg 2143
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>ref|NM_135437.3| Drosophila melanogaster CG3748-RB, transcript variant B (CG3748),
            mRNA
          Length = 1657

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 434  cagctggtggtggcagtgga 453
            ||||||||||||||||||||
Sbjct: 1114 cagctggtggtggcagtgga 1133
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 210     gcagcccgacgatctcgccg 229
               ||||||||||||||||||||
Sbjct: 1224228 gcagcccgacgatctcgccg 1224247
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 211     cagcccgacgatctcgccgtcgcg 234
               ||||||||||||||||||| ||||
Sbjct: 1768067 cagcccgacgatctcgccggcgcg 1768044
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>gb|AC092492.1|AC092492 Drosophila melanogaster, chromosome 2L, region 30B-30E, BAC clone
              BACR20B09, complete sequence
          Length = 177997

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 434    cagctggtggtggcagtgga 453
              ||||||||||||||||||||
Sbjct: 123469 cagctggtggtggcagtgga 123488
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>gb|AC092122.5| Homo sapiens chromosome 16 clone RP11-102F12, complete sequence
          Length = 174809

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   tgcagctggtggtggcagtg 451
             ||||||||||||||||||||
Sbjct: 95452 tgcagctggtggtggcagtg 95433
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>gb|AC136601.2| Homo sapiens chromosome 5 clone RP11-1259L22, complete sequence
          Length = 186323

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 434   cagctggtggtggcagtgga 453
             ||||||||||||||||||||
Sbjct: 75390 cagctggtggtggcagtgga 75371
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>gb|AC006987.2|AC006987 Homo sapiens BAC clone RP11-160K17 from Y, complete sequence
          Length = 166041

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     ccctcgcctcagcagccaga 28
             ||||||||||||||||||||
Sbjct: 60223 ccctcgcctcagcagccaga 60204
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 123     ctgggcggccgcctgggtgcccgc 146
               |||||||||| |||||||||||||
Sbjct: 4229828 ctgggcggccccctgggtgcccgc 4229851
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>gb|AY075281.1| Drosophila melanogaster AT30262 full insert cDNA
          Length = 962

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 434 cagctggtggtggcagtgga 453
           ||||||||||||||||||||
Sbjct: 394 cagctggtggtggcagtgga 413
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>dbj|AB116234.1| Streptomyces venezuelae papA, papC, papB, ORFIV genes for
            4-amino-4-deoxychorismate synthase,
            4-amino-4-deoxyprephenate dehydrogenase,
            4-amino-4-deoxychorismate mutase, hypothetical protein,
            complete cds
          Length = 5251

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  tggggcgtccagttccaccc 413
            ||||||||||||||||||||
Sbjct: 1137 tggggcgtccagttccaccc 1156
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>gb|AE003624.3| Drosophila melanogaster chromosome 2L, section 33 of 83 of the complete
              sequence
          Length = 270771

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 434    cagctggtggtggcagtgga 453
              ||||||||||||||||||||
Sbjct: 177244 cagctggtggtggcagtgga 177263
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>gb|AC005125.1|AC005125 Drosophila melanogaster, chromosome 2L, region 30A7-30A8, P1 clone
            DS06478, complete sequence
          Length = 66178

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 434  cagctggtggtggcagtgga 453
            ||||||||||||||||||||
Sbjct: 1177 cagctggtggtggcagtgga 1158
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 164     cggcgctgctcctcaccggc 183
               ||||||||||||||||||||
Sbjct: 2672309 cggcgctgctcctcaccggc 2672290
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>emb|AL844552.4| Mouse DNA sequence from clone RP23-265N10 on chromosome 2, complete
             sequence
          Length = 77710

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    cagccagatcaaacacctag 40
             ||||||||||||||||||||
Sbjct: 61182 cagccagatcaaacacctag 61201
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>gb|AC093290.4| Homo sapiens chromosome 5 clone RP11-47L17, complete sequence
          Length = 179443

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   cagctggtggtggcagtgga 453
             ||||||||||||||||||||
Sbjct: 61423 cagctggtggtggcagtgga 61442


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,333,266
Number of Sequences: 3902068
Number of extensions: 3333266
Number of successful extensions: 80840
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78936
Number of HSP's gapped (non-prelim): 1904
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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