ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart42g03 |
|---|---|
| Clone Library Name | barley_pub |
>FLHA_HELPJ (Q9ZM40) Flagellar biosynthesis protein flhA| Length = 733 Score = 32.0 bits (71), Expect = 1.2 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Frame = +1 Query: 154 AST-TVLLLGSDLAVQ--PLADEIQLDVKALNSTDPGSPDYA-KLVQEIQNDAKELLLEG 321 AST T+L +G L Q L + A +T D+A KL+ ++ N +K L++ G Sbjct: 243 ASTFTILTIGDGLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVG 302 Query: 322 AGYLLFAVV 348 A LLFA + Sbjct: 303 ANLLLFATI 311
>IRX3_HUMAN (P78415) Iroquois-class homeodomain protein IRX-3 (Iroquois| homeobox protein 3) (Homeodomain protein IRXB1) Length = 501 Score = 31.6 bits (70), Expect = 1.6 Identities = 23/62 (37%), Positives = 27/62 (43%) Frame = +3 Query: 363 PDPPPIRHRLDVLRRAAYYLQGAPRES*GAAEGPPAHARLRLRPGDRLHRVSGVDGGTSR 542 P P P H L +L A +L G P A G PA A RP + +GGT R Sbjct: 416 PPPGPRLHPLSLLGSAPPHLLGLP-----GAAGHPAAAAAFARPAE-------PEGGTDR 463 Query: 543 CS 548 CS Sbjct: 464 CS 465
>IRX4_CHICK (Q9YGS0) Iroquois-class homeodomain protein IRX-4 (Iroquois| homeobox protein 4) Length = 485 Score = 30.8 bits (68), Expect = 2.7 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -3 Query: 525 QRQKHDVDDLQDVDEGEREQGALQLRLSFPEEHP 424 + ++ ++ DL+D+D E E ++R FP HP Sbjct: 248 EEKELELSDLEDLDAAESESSECEMRRPFPHPHP 281
>DCMR_METDI (P45876) Transcriptional repressor dcmR| Length = 265 Score = 30.4 bits (67), Expect = 3.6 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = +1 Query: 223 DVKALNSTDPGSPDYAKLVQEIQNDAKELLLEGAGYLLFAVVISSAVRILLLFATVL--- 393 D+ LN+T PG K+++E+ D + + + G L+F + + +L + Sbjct: 128 DICFLNATQPGKAHILKVLREVYPDVHKAIKD--GQLIFPALKRNKAEMLDQLEEMFLKA 185 Query: 394 TYSGEQR 414 TYSGEQ+ Sbjct: 186 TYSGEQK 192
>RN146_MOUSE (Q9CZW6) RING finger protein 146| Length = 359 Score = 30.4 bits (67), Expect = 3.6 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -3 Query: 198 LDGEVAAEEEHRGRGDDDGADCYEEPPVAGREEDAFL*EVEERRS 64 L G+ AE HRG G++D E P +GR D + E E S Sbjct: 254 LSGDSIAERSHRGEGEED-----HESPSSGRVPDTSVEETESDAS 293
>MURA_SYNEL (Q8DKS7) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 439 Score = 30.4 bits (67), Expect = 3.6 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 16/63 (25%) Frame = +1 Query: 112 RNRGLFIAVGAIVIASTTVLLLGSDLA---------------VQPLADE-IQLDVKALNS 243 +N L + GA++ A TT+L DLA VQ L E I +D ALN+ Sbjct: 34 KNSALVLMAGALLAADTTILRAVPDLADIRRLGEILQALGVKVQRLGSEAIAIDATALNT 93 Query: 244 TDP 252 DP Sbjct: 94 NDP 96
>FLHA_HELPY (O06758) Flagellar biosynthesis protein flhA| Length = 733 Score = 30.4 bits (67), Expect = 3.6 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Frame = +1 Query: 154 AST-TVLLLGSDLAVQ--PLADEIQLDVKALNSTDPGSPDYA-KLVQEIQNDAKELLLEG 321 AST T+L +G L Q L + A +T D+A KL+ ++ N +K L++ G Sbjct: 243 ASTFTILTIGDGLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVG 302 Query: 322 AGYLLFAVV 348 A LLFA + Sbjct: 303 AILLLFATI 311
>MAST2_HUMAN (Q6P0Q8) Microtubule-associated serine/threonine-protein kinase 2| (EC 2.7.11.1) Length = 1798 Score = 29.6 bits (65), Expect = 6.1 Identities = 18/46 (39%), Positives = 20/46 (43%) Frame = +3 Query: 360 RPDPPPIRHRLDVLRRAAYYLQGAPRES*GAAEGPPAHARLRLRPG 497 RP PPP R D ++RAA Q P PP RL R G Sbjct: 9 RPQPPPPDRREDGVQRAAELSQSLPPR----RRAPPGRQRLEERTG 50
>FLGK_ECOLI (P33235) Flagellar hook-associated protein 1 (HAP1)| Length = 546 Score = 29.6 bits (65), Expect = 6.1 Identities = 23/71 (32%), Positives = 36/71 (50%) Frame = +1 Query: 52 NPSTGPSFFNFLKEGVLLPTRNRGLFIAVGAIVIASTTVLLLGSDLAVQPLADEIQLDVK 231 N G FF K VL T+N+G +A+GA V ++ V L +D + ++ Q+ Sbjct: 319 NGDAGEDFFAIGKPAVLQNTKNKG-DVAIGATVTDASAV--LATDYKISFDNNQWQVTRL 375 Query: 232 ALNSTDPGSPD 264 A N+T +PD Sbjct: 376 ASNTTFTVTPD 386
>UCRI_SOLTU (P37841) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 265 Score = 29.6 bits (65), Expect = 6.1 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%) Frame = -1 Query: 353 LMTTANRRYPAPSSRSSLASFWISCTSLA*SGLPGSVLFSALTSSWISSARGWTARSL-- 180 ++ A RR + ++RSS F S ++ P +LTSS++ RG+++ S+ Sbjct: 1 MLRVAGRRLSSSAARSSSTFFTRSSFTVTDDSSPARSPSPSLTSSFLDQIRGFSSNSVSP 60 Query: 179 PRRSTVVEAMTMAPTAMKSPRLRV 108 + +V + A+K+P ++ Sbjct: 61 AHQLGLVSDLPATVAAIKNPSSKI 84
>HAS1_GIBZE (Q4IEK8) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)| Length = 590 Score = 29.6 bits (65), Expect = 6.1 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 9/53 (16%) Frame = -3 Query: 222 ELDLVGEGLDGEVAAEEEHRGRGDDDGADCYEE---------PPVAGREEDAF 91 E D E ++ +AEEE GD+D A+ + PPVAG E +F Sbjct: 65 ESDQADEDVEAANSAEEEEEEGGDEDNAENNTDLPNGGQLTLPPVAGAEAQSF 117
>RN146_RAT (Q5XIK5) RING finger protein 146| Length = 352 Score = 29.6 bits (65), Expect = 6.1 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -3 Query: 198 LDGEVAAEEEHRGRGDDDGADCYEEPPVAGREEDAFL*EVEERRS 64 L G+ AE HRG G++D E P +GR D E E S Sbjct: 252 LSGDSIAERSHRGEGEED-----HESPSSGRVPDTSTEETESDAS 291
>MTRA_METKA (O32867) Tetrahydromethanopterin S-methyltransferase subunit A (EC| 2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit A) Length = 248 Score = 29.6 bits (65), Expect = 6.1 Identities = 23/99 (23%), Positives = 44/99 (44%) Frame = +1 Query: 208 DEIQLDVKALNSTDPGSPDYAKLVQEIQNDAKELLLEGAGYLLFAVVISSAVRILLLFAT 387 DEI ++ DPG+ + + ++ + +E L E AG + A ++ RI + Sbjct: 146 DEIVKAIEECVEKDPGAYEEGPMTISLEEEEEEELAEVAGMPVSAETVTVEYRINDVRVG 205 Query: 388 VLTYSGEQRTTFRVLLGKAKAQLKGPLLTLAFVYVLEIV 504 V + QR L G+ L G + + F+++ +V Sbjct: 206 VKSIGAMQRYMAGYLSGRTMGLLIGIISGMIFLFLPMVV 244
>ISW2_ORYSA (Q7G8Y3) Putative chromatin remodelling complex ATPase chain (EC| 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) Length = 1107 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = -3 Query: 207 GEGLDGEVAAEEEHRGRGDDDGADCYEEPPVAGREEDAFL*EVEERRSR 61 GEG + + E++ G+DD AD E V G+ E A L E+++ + + Sbjct: 88 GEGDEESQSTEDDEAVVGEDDDADEAEGGAVVGKREKARLKEMQKLKKQ 136
>CJ006_HUMAN (Q8IX21) Protein C10orf6| Length = 1173 Score = 29.3 bits (64), Expect = 7.9 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Frame = -3 Query: 555 LHENNEKCPHQRQKHDVDD-----LQDVDEGEREQGALQLRLSFPEEHPEGSTL 409 +HENNEK R K + D + + D +L R S HPE S L Sbjct: 179 IHENNEKNDRDRGKTNADSKKQTTVAEADIFNNSSRSLSSRSSLSRHHPEESPL 232
>GRC3_GIBZE (Q4IR18) Protein GRC3| Length = 796 Score = 29.3 bits (64), Expect = 7.9 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = -1 Query: 257 LPGSVLFSALTSSWISSARGWTARSLPRRSTVVEA-MTMAPTAMKSPRLRVGRRTPSFRK 81 L G+ L+ + T W+ + ++P T+ E + + P ++GR +P FRK Sbjct: 163 LAGATLYPSETIEWVHAPH---CHAVPMLRTIDETILELHPDRNARGIRQLGRLSPLFRK 219 Query: 80 LKNEGP 63 + NE P Sbjct: 220 IWNESP 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,809,350 Number of Sequences: 219361 Number of extensions: 1136100 Number of successful extensions: 4419 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4242 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4413 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
