Clone Name | bart42f07 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/my... | 30 | 3.3 | 2 | AMPA_NEIMA (Q9JTI8) Probable cytosol aminopeptidase (EC 3.4.11.1... | 30 | 5.7 | 3 | TNPX_ECOLI (Q00042) Putative transposon gamma-delta 80.3 kDa pro... | 30 | 5.7 | 4 | CSN11_KLULA (Q6CU48) COP9 signalosome complex subunit 11 | 29 | 7.5 | 5 | CWC22_CANAL (Q59XY0) Pre-mRNA-splicing factor CWC22 | 29 | 9.7 |
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>SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol| cotransporter) Length = 718 Score = 30.4 bits (67), Expect = 3.3 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = +1 Query: 358 YTASG-FWRAGLNLFVATEKLLTNPAEKERLKTCILRAREHLDEKEN 495 Y A+G FW GL + + LLT P KE+++T ++++L KEN Sbjct: 513 YVATGLFWVTGLITVIVS--LLTPPPTKEQIRTTTFWSKKNLVVKEN 557
>AMPA_NEIMA (Q9JTI8) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine| aminopeptidase) (LAP) (Leucyl aminopeptidase) Length = 468 Score = 29.6 bits (65), Expect = 5.7 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -3 Query: 417 QLLCCYEEVQTSAPESRCCISSLKDGCNTANRRV 316 QL C EE Q + P + +SSL++G N A+ ++ Sbjct: 18 QLFVCTEEAQLNHPTALALLSSLEEGQNFADTKI 51
>TNPX_ECOLI (Q00042) Putative transposon gamma-delta 80.3 kDa protein| (Transposon Tn1000 protein tnpX) Length = 698 Score = 29.6 bits (65), Expect = 5.7 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Frame = +1 Query: 316 YSTVCRVATVLQTRYTASGFWRAGLNLFVATEKLLT------NPAEKERLKTCILRAREH 477 Y+ + +A+ + + Y S +++E LL N A+ + L+ C L A+E+ Sbjct: 110 YAMLMEIASYISSHYKLSSQ--------ISSETLLNEHLKKWNSAQGDILRKCRLVAKEY 161 Query: 478 LDEKENEESM 507 LDE EES+ Sbjct: 162 LDENNPEESI 171
>CSN11_KLULA (Q6CU48) COP9 signalosome complex subunit 11| Length = 389 Score = 29.3 bits (64), Expect = 7.5 Identities = 14/50 (28%), Positives = 28/50 (56%) Frame = +1 Query: 268 LRDRYDGASPALRESMYSTVCRVATVLQTRYTASGFWRAGLNLFVATEKL 417 L ++D S +R+ MY+ R+AT +Q Y + R G++ + T+++ Sbjct: 239 LEKKWDIISKTMRQKMYAFYLRIATKIQISYLSE---RVGISREIVTQEI 285
>CWC22_CANAL (Q59XY0) Pre-mRNA-splicing factor CWC22| Length = 648 Score = 28.9 bits (63), Expect = 9.7 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +1 Query: 379 RAGLNLFVATEKLLTNPAEKERLKTCILRAREHLDEKENE 498 R LN+F E+ L + E LK IL +H DE ENE Sbjct: 265 RDHLNVFSVDEEYLDHENEYIELKKEILGETDHEDENENE 304 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,310,812 Number of Sequences: 219361 Number of extensions: 909372 Number of successful extensions: 2919 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2831 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2919 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)