>RLMB_NITEU (Q82XD1) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC|
           2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase)
          Length = 260

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 179 EDRFDGLPDPLLLLIFNRIGDVKALGRCALVSRRF--HALV 295
           ED  +GL +P LLL+ + + D   LG C  V+  F  HA+V
Sbjct: 86  EDLLEGLTEPALLLVLDGVKDPHNLGACLRVADAFGVHAVV 126

>FBX27_HUMAN (Q8NI29) F-box only protein 27 (F-box/G-domain protein 5)|
          Length = 283

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 152 RLAAAAGAPEDRFD--GLPDPLLLLIFNRIGDVKALGRCALVSRRFHALV 295
           R+ A    PE+  D   LP  LLL++ + +     LGRC  V R + ALV
Sbjct: 12  RVPAPEPEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRALV 61

>FBX27_MACFA (Q9N0C8) F-box only protein 27|
          Length = 280

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 176 PEDRFD--GLPDPLLLLIFNRIGDVKALGRCALVSRRFHALV 295
           PE+  D   LP  LLL++ + +     LGRC  V R + ALV
Sbjct: 22  PEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRALV 63

>FBX2_HUMAN (Q9UK22) F-box only protein 2|
          Length = 296

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
 Frame = +2

Query: 140 QQPHRLAAAAGAPEDR-----------FDGLPDPLLLLIFNRIGDVKALGRCALVSRRFH 286
           +QP   +A    PED+            D LP+PLLL +   +   + +  C LV  R+ 
Sbjct: 20  EQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQACRLVCLRWK 79

Query: 287 ALV 295
            LV
Sbjct: 80  ELV 82

>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1|
          (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1)
          Length = 1600

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 9  RSPRGLPRPAFPPSHLSPQIRSS 77
          RSP GLP+PAFPP   +P + S+
Sbjct: 14 RSP-GLPQPAFPPGQTAPVVFST 35

>CI047_HUMAN (Q6ZRZ4) Protein C9orf47 precursor|
          Length = 202

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 76  EDRIWGERWEGGNAGRGRPRGER 8
           ED++W   WE G  G   PRG R
Sbjct: 61  EDKVWRPAWEQGPKGEPDPRGLR 83

>CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel alpha-1I subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.3)
            (Ca(v)3.3)
          Length = 2223

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 149  HRLAAAAGAPEDRFDGLPDPLLLLIFNRIGDVKALGRCALVSR 277
            H   A A  P  R    PDP+L+ + +R   V +LGR +   R
Sbjct: 923  HLGPAGAAGPAPRLSLQPDPMLVALGSRKSSVMSLGRMSYDQR 965

>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1|
          (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220)
          Length = 1600

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 6  PRSPRGLPRPAFPPSHLSPQIRSS 77
          P    GLP+PAFPP   +P + S+
Sbjct: 12 PAPSPGLPQPAFPPGQTAPVVFST 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,652,760
Number of Sequences: 219361
Number of extensions: 246489
Number of successful extensions: 1409
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)