ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart42e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NUP3_PENSQ (P24504) Nuclease PA3 (EC 3.1.3.6) (Endonuclease PA3)... 90 4e-18
2NUP1_PENCI (P24289) Nuclease P1 (EC 3.1.30.1) (Endonuclease P1) ... 90 4e-18
3NUS1_ASPOR (P24021) Nuclease S1 precursor (EC 3.1.30.1) (Endonuc... 76 6e-14
4KP58_DROME (Q9VPC0) Serine/threonine-protein kinase PITSLRE (EC ... 30 3.0
5BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain ... 30 5.1
6ADEC_DESVH (Q72EX7) Adenine deaminase (EC 3.5.4.2) (Adenase) (Ad... 30 5.1
7LAMA_DROME (Q00174) Laminin alpha chain precursor 29 8.7

>NUP3_PENSQ (P24504) Nuclease PA3 (EC 3.1.3.6) (Endonuclease PA3)|
           (Deoxyribonuclease PA3)
          Length = 270

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 7/131 (5%)
 Frame = +1

Query: 127 WGKEGHYMTCKIADGFLTSEALTGVKALLPSWANGELAEVCSWADSQRFRY--RWSRSLH 300
           WG  GH     +A  +++ EA +  + +L S ++  LA + SWAD  R     +WS SLH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 301 FADT----PGDCKFSYARDCHDTKGNKNVCVVGAINNYTAALQDSS-SPFDPTESLMFLA 465
           F D     P +C   Y RDC       + C + AI NYT  + DSS S  +  E+L FL 
Sbjct: 61  FIDAEDNPPTNCNVDYERDC-----GSSGCSISAIANYTQRVSDSSLSSENHAEALRFLV 115

Query: 466 HFVGDVHQPMH 498
           HF+GD+ QP+H
Sbjct: 116 HFIGDMTQPLH 126



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>NUP1_PENCI (P24289) Nuclease P1 (EC 3.1.30.1) (Endonuclease P1)|
           (Deoxyribonuclease P1)
          Length = 270

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 7/131 (5%)
 Frame = +1

Query: 127 WGKEGHYMTCKIADGFLTSEALTGVKALLPSWANGELAEVCSWADSQRFRY--RWSRSLH 300
           WG  GH     +A  +++ EA +  + +L S ++  LA + SWAD  R     +WS SLH
Sbjct: 1   WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60

Query: 301 FADT----PGDCKFSYARDCHDTKGNKNVCVVGAINNYTAALQDSS-SPFDPTESLMFLA 465
           F D     P +C   Y RDC       + C + AI NYT  + DSS S  +  E+L FL 
Sbjct: 61  FIDAEDNPPTNCNVDYERDC-----GSSGCSISAIANYTQRVSDSSLSSENHAEALRFLV 115

Query: 466 HFVGDVHQPMH 498
           HF+GD+ QP+H
Sbjct: 116 HFIGDMTQPLH 126



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>NUS1_ASPOR (P24021) Nuclease S1 precursor (EC 3.1.30.1) (Endonuclease S1)|
           (Single-stranded-nucleate endonuclease)
           (Deoxyribonuclease S1)
          Length = 287

 Score = 75.9 bits (185), Expect = 6e-14
 Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
 Frame = +1

Query: 127 WGKEGHYMTCKIADGFLTSEALTGVKALLPSWANGELAEVCSWADSQRFRY--RWSRSLH 300
           WG  GH     IA  F+ S   +  + +L   +   LA V +WAD+ ++     +S+  H
Sbjct: 21  WGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTDAGEFSKPYH 80

Query: 301 FADT----PGDCKFSYARDCHDTKGNKNVCVVGAINNYTAALQDSSSPFDPTESLMFLAH 468
           F D     P  C   Y RDC         C + AI NYT  L +S +  +   +L F+ H
Sbjct: 81  FIDAQDNPPQSCGVDYDRDCGSAG-----CSISAIQNYTNILLESPNGSEALNALKFVVH 135

Query: 469 FVGDVHQPMH 498
            +GD+HQP+H
Sbjct: 136 IIGDIHQPLH 145



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>KP58_DROME (Q9VPC0) Serine/threonine-protein kinase PITSLRE (EC 2.7.11.22)|
           (Cell division cycle 2-like)
          Length = 952

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 270 ALAVRPRAHLRELAVGPRREERLHPRQRLARQE 172
           AL ++P    RE   GPRRE++ H R+R   +E
Sbjct: 35  ALYIQPPQASRESGSGPRREKKKHSRERRRHKE 67



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>BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain protein 1B|
            (Williams-Beuren syndrome chromosome region 9 protein)
            (WBRS9) (Williams syndrome transcription factor) (hWALP2)
          Length = 1483

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 162  RRRFPDERGVDGGEGAPPVVGQRRAR 239
            R++FPD    D G+  P  VGQ R R
Sbjct: 1454 RKKFPDRLAEDEGDSEPEAVGQSRGR 1479



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>ADEC_DESVH (Q72EX7) Adenine deaminase (EC 3.5.4.2) (Adenase) (Adenine aminase)|
          Length = 575

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = -3

Query: 450 ALRRVKWAGRVLER-GGVVVDGPDHA 376
           A+R+V  AGR++ R G VVVD PDHA
Sbjct: 339 AVRKVYAAGRLVARDGAVVVDLPDHA 364



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>LAMA_DROME (Q00174) Laminin alpha chain precursor|
          Length = 3712

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 283 WSRSLHFADTPGDCKFSYARDCHD--TKGNKNVC 378
           W+   HF+DTP DC+  + +D +   T+ +  +C
Sbjct: 155 WTPWQHFSDTPADCETYFGKDTYKPITRDDDVIC 188


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,745,544
Number of Sequences: 219361
Number of extensions: 952108
Number of successful extensions: 3351
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3345
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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