ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart42d12 |
|---|---|
| Clone Library Name | barley_pub |
>PRPX_HORVU (P16273) Pathogen-related protein| Length = 235 Score = 166 bits (420), Expect = 4e-41 Identities = 82/141 (58%), Positives = 97/141 (68%) Frame = +2 Query: 122 AEDSSGGDKYRSHLAGEGEKNTVWRHGAPPTYDAVNSLFEAGRTQEWPEGSLEETVQNAI 301 A GGDKYRS L G+GEK TVWRHGAPP YD VN LFE RT+EW EGS+EE VQ + Sbjct: 2 ASAEGGGDKYRSFLHGDGEKKTVWRHGAPPNYDLVNKLFEEERTKEWAEGSVEEKVQRLL 61 Query: 302 KTWEMELSHKARIEDFKSVSPGRFTLSVNGGRALTGEETLAMGSYNALLASPILPGAGAY 481 KTWEME+ HK R ED KSV+ ++ S NG + LT EE +AMG YNA LA+ + P Y Sbjct: 62 KTWEMEMVHKVRPEDQKSVNLKNYSASTNGLKPLTREEVMAMGGYNAFLATTLPPEHRIY 121 Query: 482 DAAAETFESSHDLFRSAFPRG 544 D AE+ ES+ F +AFPRG Sbjct: 122 DPEAESVESATSTFLTAFPRG 142
>HIS6_RHORT (Q2RNA7) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 252 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%) Frame = +2 Query: 344 DFKSVSPGRFTLSVNGGRALTG-------EETLAMGSYNALLAS 454 D KSV PGRF + +GGR TG + +A+G+ LL S Sbjct: 130 DAKSVGPGRFEIFTHGGRKATGLDAVDWAKRMVALGAGEILLTS 173
>ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related homeobox)| Length = 564 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = -3 Query: 270 PSGHSWVLPASKRLFTASYVGGAPCRHTVFFSPSPAR*DRYLSPPEESSACAAI 109 P G + + P+ L ++++G A RH F SP+ R ++P +S AA+ Sbjct: 449 PPGSASLPPSGAPLGLSTFLGAAVFRHPAFISPAFGRLFSTMAPLTSASTAAAL 502
>ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related homeobox)| Length = 562 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = -3 Query: 270 PSGHSWVLPASKRLFTASYVGGAPCRHTVFFSPSPAR*DRYLSPPEESSACAAI 109 P G + + P+ L ++++G A RH F SP+ R ++P +S AA+ Sbjct: 447 PPGSASLPPSGAPLGLSTFLGAAVFRHPAFISPAFGRLFSTMAPLTSASTAAAL 500
>HFLC_VIBPA (P40606) Protein hflC (EC 3.4.-.-)| Length = 326 Score = 29.6 bits (65), Expect = 5.8 Identities = 24/75 (32%), Positives = 34/75 (45%) Frame = +2 Query: 197 HGAPPTYDAVNSLFEAGRTQEWPEGSLEETVQNAIKTWEMELSHKARIEDFKSVSPGRFT 376 H P +D V L +T + G + V + K ++ K RIEDF GR+ Sbjct: 53 HFKMPLFDRVKQLDARIQTMD---GRADRFVTSEKKDVIIDSYVKWRIEDF-----GRYY 104 Query: 377 LSVNGGRALTGEETL 421 L+ GG +LT E L Sbjct: 105 LATGGGNSLTAEALL 119
>HFLC_VIBCH (Q9KV08) Protein hflC (EC 3.4.-.-)| Length = 326 Score = 29.6 bits (65), Expect = 5.8 Identities = 24/75 (32%), Positives = 35/75 (46%) Frame = +2 Query: 197 HGAPPTYDAVNSLFEAGRTQEWPEGSLEETVQNAIKTWEMELSHKARIEDFKSVSPGRFT 376 H P +D V +L +T + G + V + K ++ K RIEDF G++ Sbjct: 53 HFKMPLFDRVKTLDARIQTMD---GRSDRFVTSEKKDVIIDTYVKWRIEDF-----GQYY 104 Query: 377 LSVNGGRALTGEETL 421 L+ GG ALT E L Sbjct: 105 LATGGGNALTAEALL 119
>OLEE1_BETVE (O49813) Olee1-like protein precursor| Length = 166 Score = 29.3 bits (64), Expect = 7.6 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -1 Query: 146 CRRRRNPLLVPPSDQRSDTHAGSPRRAADGDHGGECC 36 CR R L+ SD +D +G+ R DGDH E C Sbjct: 59 CRNREGGTLIYSSDSETDK-SGTYRIPVDGDHEEEIC 94
>HIS6_RHOS4 (P50937) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 253 Score = 29.3 bits (64), Expect = 7.6 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +2 Query: 344 DFKSVSPGRFTLSVNGGRALTGEETLA 424 D K+V+PGR+ + +GGR TG + +A Sbjct: 130 DAKTVAPGRWEIFTHGGRRATGIDAVA 156
>PLXA1_HUMAN (Q9UIW2) Plexin-A1 precursor (Semaphorin receptor NOV)| Length = 1896 Score = 29.3 bits (64), Expect = 7.6 Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 6/96 (6%) Frame = -3 Query: 354 DLKSSMRALCDSSISHVLIAFCTVSSSDP--SGHSWVLPASKRLFTAS----YVGGAPCR 193 D RAL + V F VS S SG +W+ L S VGG PC Sbjct: 943 DCSPHYRALSPKRFTFVTPTFYRVSPSRGPLSGGTWIGIEGSHLNAGSDVAVSVGGRPCS 1002 Query: 192 HTVFFSPSPAR*DRYLSPPEESSACAAIRSEIRHAR 85 FS +R R L+PP +S A I I A+ Sbjct: 1003 ----FSWRNSREIRCLTPPGQSPGSAPIIININRAQ 1034
>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) Length = 908 Score = 28.9 bits (63), Expect = 9.9 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = +2 Query: 83 QRACLISDLMAAQAEDSSGGDKYRSHLAGEGEK 181 +R CL L+ +Q E +S G +Y HLAGE K Sbjct: 136 ERECLKYRLVGSQEELASWGHEYVRHLAGEVAK 168
>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) (Tumor necrosis factor type 1 receptor-associated protein 2) (55.11 protein) Length = 908 Score = 28.9 bits (63), Expect = 9.9 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = +2 Query: 83 QRACLISDLMAAQAEDSSGGDKYRSHLAGEGEK 181 +R CL L+ +Q E +S G +Y HLAGE K Sbjct: 136 ERECLKYRLVGSQEELASWGHEYVRHLAGEVAK 168 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,135,024 Number of Sequences: 219361 Number of extensions: 1188427 Number of successful extensions: 4239 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4239 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
