Clone Name | bart42d12 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_191890.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 795 Score = 521 bits (263), Expect = e-145 Identities = 380/419 (90%) Strand = Plus / Plus Query: 127 ggattcctccggcggcgacaagtaccggtctcacctggccggcgagggcgagaagaacac 186 |||||||||||| |||||||||||| |||||||||| |||||||| |||||||||||||| Sbjct: 12 ggattcctccggtggcgacaagtacaggtctcaccttgccggcgacggcgagaagaacac 71 Query: 187 cgtgtggcggcacggcgcgccgcccacgtacgacgccgtgaacagcctcttcgaggccgg 246 |||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||| Sbjct: 72 ggtgtggcggcacggcgcgccacccacgttcgacaccgtgaacagcctcttcgagtccga 131 Query: 247 gaggacccaggagtggccggaggggtcgctggaggagacggtgcagaacgcgatcaagac 306 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 132 gaggacgcaggagtggccggcggggtcgctggaggagacggtgcagaacgcgatcaagac 191 Query: 307 gtgggagatggagctgtcgcacaaggcccgcatcgaggacttcaagtcggtgagccccgg 366 ||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| Sbjct: 192 atgggagatggagctgtcgcacaaggccaggctccaggacttcaagtcggtgagccccgg 251 Query: 367 ccggttcaccctgtcggtgaacggcgggcgggcgttgacgggggaggagacgctggccat 426 | ||| || || ||||||||||||||| || | || |||||||||||||| ||| | Sbjct: 252 tctcttccgtctctccgtgaacggcgggcggccgctcaccggggaggagacgctcgccgt 311 Query: 427 gggcagctacaacgcgctgctcgcgagcccgatcctgccgggcgccggtgcgtacgacgc 486 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 312 gggcagctacaacgcgctgctcgcgagcccgatcctgccgggcgccggcgcgtacgacgc 371 Query: 487 cgccgccgagacgttcgagtcctcgcacgacctcttccgatccgccttcccgcgcgggt 545 ||| |||||||||||||||||||| |||||||| ||||| | ||||| |||||||||| Sbjct: 372 cgcggccgagacgttcgagtcctcccacgacctgttccgcgcggcctttccgcgcgggt 430
>ref|NM_191889.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 801 Score = 521 bits (263), Expect = e-145 Identities = 380/419 (90%) Strand = Plus / Plus Query: 127 ggattcctccggcggcgacaagtaccggtctcacctggccggcgagggcgagaagaacac 186 ||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||| Sbjct: 18 ggattcctccggcggcgaccgttacaggtctcaccttaccggcgacggcgagaagaacac 77 Query: 187 cgtgtggcggcacggcgcgccgcccacgtacgacgccgtgaacagcctcttcgaggccgg 246 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 78 ggtgtggcggcacggcgctccacccacgtacgacgccgtgaacagcctcttcgaggccga 137 Query: 247 gaggacccaggagtggccggaggggtcgctggaggagacggtgcagaacgcgatcaagac 306 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 138 gaggacccaggagtggccggcggggtcgctggaggagacggtgcagaacgcgatcaagac 197 Query: 307 gtgggagatggagctgtcgcacaaggcccgcatcgaggacttcaagtcggtgagccccgg 366 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 198 gtgggagatggagctgtcttacaaggccaagctcgaggacttcaagtcggtgagccccgg 257 Query: 367 ccggttcaccctgtcggtgaacggcgggcgggcgttgacgggggaggagacgctggccat 426 |||||| || || ||||||||||||||| || | || |||||||||||||| ||| | Sbjct: 258 tcggttccgtctctccgtgaacggcgggcggccgctcaccggggaggagacgctcgccgt 317 Query: 427 gggcagctacaacgcgctgctcgcgagcccgatcctgccgggcgccggtgcgtacgacgc 486 |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 318 gggcagctacaacgcgctgctcacgagcccgatcctgccgggcgccggcgcgtacgacgc 377 Query: 487 cgccgccgagacgttcgagtcctcgcacgacctcttccgatccgccttcccgcgcgggt 545 ||| |||||||||||||||||||| ||||| || ||||| | |||||||||||||||| Sbjct: 378 cgcggccgagacgttcgagtcctcccacgatctgttccgcgcggccttcccgcgcgggt 436
>dbj|AK109409.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D12, full insert sequence Length = 1128 Score = 521 bits (263), Expect = e-145 Identities = 380/419 (90%) Strand = Plus / Plus Query: 127 ggattcctccggcggcgacaagtaccggtctcacctggccggcgagggcgagaagaacac 186 ||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||| Sbjct: 84 ggattcctccggcggcgaccgttacaggtctcaccttaccggcgacggcgagaagaacac 143 Query: 187 cgtgtggcggcacggcgcgccgcccacgtacgacgccgtgaacagcctcttcgaggccgg 246 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 144 ggtgtggcggcacggcgctccacccacgtacgacgccgtgaacagcctcttcgaggccga 203 Query: 247 gaggacccaggagtggccggaggggtcgctggaggagacggtgcagaacgcgatcaagac 306 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 204 gaggacccaggagtggccggcggggtcgctggaggagacggtgcagaacgcgatcaagac 263 Query: 307 gtgggagatggagctgtcgcacaaggcccgcatcgaggacttcaagtcggtgagccccgg 366 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 264 gtgggagatggagctgtcttacaaggccaagctcgaggacttcaagtcggtgagccccgg 323 Query: 367 ccggttcaccctgtcggtgaacggcgggcgggcgttgacgggggaggagacgctggccat 426 |||||| || || ||||||||||||||| || | || |||||||||||||| ||| | Sbjct: 324 tcggttccgtctctccgtgaacggcgggcggccgctcaccggggaggagacgctcgccgt 383 Query: 427 gggcagctacaacgcgctgctcgcgagcccgatcctgccgggcgccggtgcgtacgacgc 486 |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 384 gggcagctacaacgcgctgctcacgagcccgatcctgccgggcgccggcgcgtacgacgc 443 Query: 487 cgccgccgagacgttcgagtcctcgcacgacctcttccgatccgccttcccgcgcgggt 545 ||| |||||||||||||||||||| ||||| || ||||| | |||||||||||||||| Sbjct: 444 cgcggccgagacgttcgagtcctcccacgatctgttccgcgcggccttcccgcgcgggt 502
>dbj|AK106037.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-D09, full insert sequence Length = 1086 Score = 521 bits (263), Expect = e-145 Identities = 380/419 (90%) Strand = Plus / Plus Query: 127 ggattcctccggcggcgacaagtaccggtctcacctggccggcgagggcgagaagaacac 186 ||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||| Sbjct: 79 ggattcctccggcggcgaccgttacaggtctcaccttaccggcgacggcgagaagaacac 138 Query: 187 cgtgtggcggcacggcgcgccgcccacgtacgacgccgtgaacagcctcttcgaggccgg 246 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 139 ggtgtggcggcacggcgctccacccacgtacgacgccgtgaacagcctcttcgaggccga 198 Query: 247 gaggacccaggagtggccggaggggtcgctggaggagacggtgcagaacgcgatcaagac 306 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 199 gaggacccaggagtggccggcggggtcgctggaggagacggtgcagaacgcgatcaagac 258 Query: 307 gtgggagatggagctgtcgcacaaggcccgcatcgaggacttcaagtcggtgagccccgg 366 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 259 gtgggagatggagctgtcttacaaggccaagctcgaggacttcaagtcggtgagccccgg 318 Query: 367 ccggttcaccctgtcggtgaacggcgggcgggcgttgacgggggaggagacgctggccat 426 |||||| || || ||||||||||||||| || | || |||||||||||||| ||| | Sbjct: 319 tcggttccgtctctccgtgaacggcgggcggccgctcaccggggaggagacgctcgccgt 378 Query: 427 gggcagctacaacgcgctgctcgcgagcccgatcctgccgggcgccggtgcgtacgacgc 486 |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 379 gggcagctacaacgcgctgctcacgagcccgatcctgccgggcgccggcgcgtacgacgc 438 Query: 487 cgccgccgagacgttcgagtcctcgcacgacctcttccgatccgccttcccgcgcgggt 545 ||| |||||||||||||||||||| ||||| || ||||| | |||||||||||||||| Sbjct: 439 cgcggccgagacgttcgagtcctcccacgatctgttccgcgcggccttcccgcgcgggt 497
>dbj|AK061471.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E01, full insert sequence Length = 1086 Score = 521 bits (263), Expect = e-145 Identities = 380/419 (90%) Strand = Plus / Plus Query: 127 ggattcctccggcggcgacaagtaccggtctcacctggccggcgagggcgagaagaacac 186 ||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||| Sbjct: 79 ggattcctccggcggcgaccgttacaggtctcaccttaccggcgacggcgagaagaacac 138 Query: 187 cgtgtggcggcacggcgcgccgcccacgtacgacgccgtgaacagcctcttcgaggccgg 246 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 139 ggtgtggcggcacggcgctccacccacgtacgacgccgtgaacagcctcttcgaggccga 198 Query: 247 gaggacccaggagtggccggaggggtcgctggaggagacggtgcagaacgcgatcaagac 306 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 199 gaggacccaggagtggccggcggggtcgctggaggagacggtgcagaacgcgatcaagac 258 Query: 307 gtgggagatggagctgtcgcacaaggcccgcatcgaggacttcaagtcggtgagccccgg 366 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 259 gtgggagatggagctgtcttacaaggccaagctcgaggacttcaagtcggtgagccccgg 318 Query: 367 ccggttcaccctgtcggtgaacggcgggcgggcgttgacgggggaggagacgctggccat 426 |||||| || || ||||||||||||||| || | || |||||||||||||| ||| | Sbjct: 319 tcggttccgtctctccgtgaacggcgggcggccgctcaccggggaggagacgctcgccgt 378 Query: 427 gggcagctacaacgcgctgctcgcgagcccgatcctgccgggcgccggtgcgtacgacgc 486 |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 379 gggcagctacaacgcgctgctcacgagcccgatcctgccgggcgccggcgcgtacgacgc 438 Query: 487 cgccgccgagacgttcgagtcctcgcacgacctcttccgatccgccttcccgcgcgggt 545 ||| |||||||||||||||||||| ||||| || ||||| | |||||||||||||||| Sbjct: 439 cgcggccgagacgttcgagtcctcccacgatctgttccgcgcggccttcccgcgcgggt 497
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 357 bits (180), Expect = 2e-95 Identities = 264/292 (90%) Strand = Plus / Minus Query: 254 caggagtggccggaggggtcgctggaggagacggtgcagaacgcgatcaagacgtgggag 313 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 30514591 caggagtggccggcggggtcgctggaggagacggtgcagaacgcgatcaagacatgggag 30514532 Query: 314 atggagctgtcgcacaaggcccgcatcgaggacttcaagtcggtgagccccggccggttc 373 ||||||||||||||||||||| | || ||||||||||||||||||||||||| | ||| Sbjct: 30514531 atggagctgtcgcacaaggccaggctccaggacttcaagtcggtgagccccggtctcttc 30514472 Query: 374 accctgtcggtgaacggcgggcgggcgttgacgggggaggagacgctggccatgggcagc 433 || || ||||||||||||||| || | || |||||||||||||| ||| |||||||| Sbjct: 30514471 cgtctctccgtgaacggcgggcggccgctcaccggggaggagacgctcgccgtgggcagc 30514412 Query: 434 tacaacgcgctgctcgcgagcccgatcctgccgggcgccggtgcgtacgacgccgccgcc 493 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 30514411 tacaacgcgctgctcgcgagcccgatcctgccgggcgccggcgcgtacgacgccgcggcc 30514352 Query: 494 gagacgttcgagtcctcgcacgacctcttccgatccgccttcccgcgcgggt 545 ||||||||||||||||| |||||||| ||||| | ||||| |||||||||| Sbjct: 30514351 gagacgttcgagtcctcccacgacctgttccgcgcggcctttccgcgcgggt 30514300 Score = 357 bits (180), Expect = 2e-95 Identities = 264/292 (90%) Strand = Plus / Minus Query: 254 caggagtggccggaggggtcgctggaggagacggtgcagaacgcgatcaagacgtgggag 313 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30506569 caggagtggccggcggggtcgctggaggagacggtgcagaacgcgatcaagacgtgggag 30506510 Query: 314 atggagctgtcgcacaaggcccgcatcgaggacttcaagtcggtgagccccggccggttc 373 ||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| Sbjct: 30506509 atggagctgtcttacaaggccaagctcgaggacttcaagtcggtgagccccggtcggttc 30506450 Query: 374 accctgtcggtgaacggcgggcgggcgttgacgggggaggagacgctggccatgggcagc 433 || || ||||||||||||||| || | || |||||||||||||| ||| |||||||| Sbjct: 30506449 cgtctctccgtgaacggcgggcggccgctcaccggggaggagacgctcgccgtgggcagc 30506390 Query: 434 tacaacgcgctgctcgcgagcccgatcctgccgggcgccggtgcgtacgacgccgccgcc 493 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 30506389 tacaacgcgctgctcacgagcccgatcctgccgggcgccggcgcgtacgacgccgcggcc 30506330 Query: 494 gagacgttcgagtcctcgcacgacctcttccgatccgccttcccgcgcgggt 545 ||||||||||||||||| ||||| || ||||| | |||||||||||||||| Sbjct: 30506329 gagacgttcgagtcctcccacgatctgttccgcgcggccttcccgcgcgggt 30506278 Score = 172 bits (87), Expect = 8e-40 Identities = 120/131 (91%) Strand = Plus / Minus Query: 127 ggattcctccggcggcgacaagtaccggtctcacctggccggcgagggcgagaagaacac 186 |||||||||||| |||||||||||| |||||||||| |||||||| |||||||||||||| Sbjct: 30514812 ggattcctccggtggcgacaagtacaggtctcaccttgccggcgacggcgagaagaacac 30514753 Query: 187 cgtgtggcggcacggcgcgccgcccacgtacgacgccgtgaacagcctcttcgaggccgg 246 |||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||| Sbjct: 30514752 ggtgtggcggcacggcgcgccacccacgttcgacaccgtgaacagcctcttcgagtccga 30514693 Query: 247 gaggacccagg 257 |||||| |||| Sbjct: 30514692 gaggacgcagg 30514682 Score = 172 bits (87), Expect = 8e-40 Identities = 120/131 (91%) Strand = Plus / Minus Query: 127 ggattcctccggcggcgacaagtaccggtctcacctggccggcgagggcgagaagaacac 186 ||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||| Sbjct: 30506802 ggattcctccggcggcgaccgttacaggtctcaccttaccggcgacggcgagaagaacac 30506743 Query: 187 cgtgtggcggcacggcgcgccgcccacgtacgacgccgtgaacagcctcttcgaggccgg 246 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 30506742 ggtgtggcggcacggcgctccacccacgtacgacgccgtgaacagcctcttcgaggccga 30506683 Query: 247 gaggacccagg 257 ||||||||||| Sbjct: 30506682 gaggacccagg 30506672 Score = 42.1 bits (21), Expect = 1.9 Identities = 48/57 (84%) Strand = Plus / Plus Query: 137 ggcggcgacaagtaccggtctcacctggccggcgagggcgagaagaacaccgtgtgg 193 ||||| |||||||||||||| | || ||||||||| |||||| ||||||||||| Sbjct: 8158931 ggcggggacaagtaccggtcgttcatgtacggcgagggggagaaggacaccgtgtgg 8158987 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 166 cggcgagggcgagaagaacaccgtgtgg 193 ||||||||| |||||| ||||||||||| Sbjct: 8176615 cggcgagggagagaaggacaccgtgtgg 8176588
>dbj|AP003142.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435H01 Length = 160141 Score = 357 bits (180), Expect = 2e-95 Identities = 264/292 (90%) Strand = Plus / Minus Query: 254 caggagtggccggaggggtcgctggaggagacggtgcagaacgcgatcaagacgtgggag 313 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 142854 caggagtggccggcggggtcgctggaggagacggtgcagaacgcgatcaagacatgggag 142795 Query: 314 atggagctgtcgcacaaggcccgcatcgaggacttcaagtcggtgagccccggccggttc 373 ||||||||||||||||||||| | || ||||||||||||||||||||||||| | ||| Sbjct: 142794 atggagctgtcgcacaaggccaggctccaggacttcaagtcggtgagccccggtctcttc 142735 Query: 374 accctgtcggtgaacggcgggcgggcgttgacgggggaggagacgctggccatgggcagc 433 || || ||||||||||||||| || | || |||||||||||||| ||| |||||||| Sbjct: 142734 cgtctctccgtgaacggcgggcggccgctcaccggggaggagacgctcgccgtgggcagc 142675 Query: 434 tacaacgcgctgctcgcgagcccgatcctgccgggcgccggtgcgtacgacgccgccgcc 493 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 142674 tacaacgcgctgctcgcgagcccgatcctgccgggcgccggcgcgtacgacgccgcggcc 142615 Query: 494 gagacgttcgagtcctcgcacgacctcttccgatccgccttcccgcgcgggt 545 ||||||||||||||||| |||||||| ||||| | ||||| |||||||||| Sbjct: 142614 gagacgttcgagtcctcccacgacctgttccgcgcggcctttccgcgcgggt 142563 Score = 357 bits (180), Expect = 2e-95 Identities = 264/292 (90%) Strand = Plus / Minus Query: 254 caggagtggccggaggggtcgctggaggagacggtgcagaacgcgatcaagacgtgggag 313 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134832 caggagtggccggcggggtcgctggaggagacggtgcagaacgcgatcaagacgtgggag 134773 Query: 314 atggagctgtcgcacaaggcccgcatcgaggacttcaagtcggtgagccccggccggttc 373 ||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| Sbjct: 134772 atggagctgtcttacaaggccaagctcgaggacttcaagtcggtgagccccggtcggttc 134713 Query: 374 accctgtcggtgaacggcgggcgggcgttgacgggggaggagacgctggccatgggcagc 433 || || ||||||||||||||| || | || |||||||||||||| ||| |||||||| Sbjct: 134712 cgtctctccgtgaacggcgggcggccgctcaccggggaggagacgctcgccgtgggcagc 134653 Query: 434 tacaacgcgctgctcgcgagcccgatcctgccgggcgccggtgcgtacgacgccgccgcc 493 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 134652 tacaacgcgctgctcacgagcccgatcctgccgggcgccggcgcgtacgacgccgcggcc 134593 Query: 494 gagacgttcgagtcctcgcacgacctcttccgatccgccttcccgcgcgggt 545 ||||||||||||||||| ||||| || ||||| | |||||||||||||||| Sbjct: 134592 gagacgttcgagtcctcccacgatctgttccgcgcggccttcccgcgcgggt 134541 Score = 172 bits (87), Expect = 8e-40 Identities = 120/131 (91%) Strand = Plus / Minus Query: 127 ggattcctccggcggcgacaagtaccggtctcacctggccggcgagggcgagaagaacac 186 |||||||||||| |||||||||||| |||||||||| |||||||| |||||||||||||| Sbjct: 143075 ggattcctccggtggcgacaagtacaggtctcaccttgccggcgacggcgagaagaacac 143016 Query: 187 cgtgtggcggcacggcgcgccgcccacgtacgacgccgtgaacagcctcttcgaggccgg 246 |||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||| Sbjct: 143015 ggtgtggcggcacggcgcgccacccacgttcgacaccgtgaacagcctcttcgagtccga 142956 Query: 247 gaggacccagg 257 |||||| |||| Sbjct: 142955 gaggacgcagg 142945 Score = 172 bits (87), Expect = 8e-40 Identities = 120/131 (91%) Strand = Plus / Minus Query: 127 ggattcctccggcggcgacaagtaccggtctcacctggccggcgagggcgagaagaacac 186 ||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||| Sbjct: 135065 ggattcctccggcggcgaccgttacaggtctcaccttaccggcgacggcgagaagaacac 135006 Query: 187 cgtgtggcggcacggcgcgccgcccacgtacgacgccgtgaacagcctcttcgaggccgg 246 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 135005 ggtgtggcggcacggcgctccacccacgtacgacgccgtgaacagcctcttcgaggccga 134946 Query: 247 gaggacccagg 257 ||||||||||| Sbjct: 134945 gaggacccagg 134935
>ref|NM_188784.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 723 Score = 50.1 bits (25), Expect = 0.008 Identities = 124/157 (78%) Strand = Plus / Plus Query: 137 ggcggcgacaagtaccggtctcacctggccggcgagggcgagaagaacaccgtgtggcgg 196 ||||| |||||||||||||| | || ||||||||| |||||| ||||||||||| || Sbjct: 31 ggcggggacaagtaccggtcgttcatgtacggcgagggggagaaggacaccgtgtggagg 90 Query: 197 cacggcgcgccgcccacgtacgacgccgtgaacagcctcttcgaggccgggaggacccag 256 | || | || || | ||||||| ||| |||| |||||||||| | ||| ||| || Sbjct: 91 cttggatcccctccaaactacgacgtcgtcaacaagctcttcgaggaagagagaaccaag 150 Query: 257 gagtggccggaggggtcgctggaggagacggtgcaga 293 || ||||| |||||||| |||||||||| ||| |||| Sbjct: 151 gaatggccagaggggtctctggaggagaaggtccaga 187
>ref|NM_188786.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 723 Score = 48.1 bits (24), Expect = 0.030 Identities = 102/128 (79%) Strand = Plus / Plus Query: 166 cggcgagggcgagaagaacaccgtgtggcggcacggcgcgccgcccacgtacgacgccgt 225 ||||||||| |||||| ||||||||||| ||| || | || || | ||||||| ||| Sbjct: 57 cggcgagggagagaaggacaccgtgtggaggcttggatcccctccaaactacgacgtcgt 116 Query: 226 gaacagcctcttcgaggccgggaggacccaggagtggccggaggggtcgctggaggagac 285 |||| |||||||||| | ||| ||| |||| ||||| |||||||| |||||||||| Sbjct: 117 caacaagctcttcgaggaagagagaaccaaggaatggccagaggggtctctggaggagaa 176 Query: 286 ggtgcaga 293 ||| |||| Sbjct: 177 ggtccaga 184
>dbj|AK059893.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D11, full insert sequence Length = 1312 Score = 48.1 bits (24), Expect = 0.030 Identities = 102/128 (79%) Strand = Plus / Plus Query: 166 cggcgagggcgagaagaacaccgtgtggcggcacggcgcgccgcccacgtacgacgccgt 225 ||||||||| |||||| ||||||||||| ||| || | || || | ||||||| ||| Sbjct: 275 cggcgagggagagaaggacaccgtgtggaggcttggatcccctccaaactacgacgtcgt 334 Query: 226 gaacagcctcttcgaggccgggaggacccaggagtggccggaggggtcgctggaggagac 285 |||| |||||||||| | ||| ||| |||| ||||| |||||||| |||||||||| Sbjct: 335 caacaagctcttcgaggaagagagaaccaaggaatggccagaggggtctctggaggagaa 394 Query: 286 ggtgcaga 293 ||| |||| Sbjct: 395 ggtccaga 402
>ref|NM_106525.1| Arabidopsis thaliana unknown protein AT1G78780 transcript variant AT1G78780.2 mRNA, complete cds Length = 834 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 281 gagacggtgcagaacgcgatcaagacgtgggagatggag 319 ||||| ||||| |||||||||||| | |||||||||||| Sbjct: 168 gagacagtgcaaaacgcgatcaagtcatgggagatggag 206
>ref|NM_179570.1| Arabidopsis thaliana unknown protein AT1G78780 transcript variant AT1G78780.1 mRNA, complete cds Length = 926 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 281 gagacggtgcagaacgcgatcaagacgtgggagatggag 319 ||||| ||||| |||||||||||| | |||||||||||| Sbjct: 260 gagacagtgcaaaacgcgatcaagtcatgggagatggag 298
>gb|BT011840.1| Arabidopsis thaliana At1g78780 mRNA sequence Length = 756 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 281 gagacggtgcagaacgcgatcaagacgtgggagatggag 319 ||||| ||||| |||||||||||| | |||||||||||| Sbjct: 193 gagacagtgcaaaacgcgatcaagtcatgggagatggag 231
>gb|AY088545.1| Arabidopsis thaliana clone 772 mRNA, complete sequence Length = 834 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 281 gagacggtgcagaacgcgatcaagacgtgggagatggag 319 ||||| ||||| |||||||||||| | |||||||||||| Sbjct: 168 gagacagtgcaaaacgcgatcaagtcatgggagatggag 206
>dbj|AK118885.1| Arabidopsis thaliana At1g78780 mRNA for unknown protein, complete cds, clone: RAFL21-21-P14 Length = 926 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 281 gagacggtgcagaacgcgatcaagacgtgggagatggag 319 ||||| ||||| |||||||||||| | |||||||||||| Sbjct: 260 gagacagtgcaaaacgcgatcaagtcatgggagatggag 298
>gb|AC005679.1|F9K20 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence Length = 90425 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 281 gagacggtgcagaacgcgatcaagacgtgggagatggag 319 ||||| ||||| |||||||||||| | |||||||||||| Sbjct: 55703 gagacagtgcaaaacgcgatcaagtcatgggagatggag 55741
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 159 acctggccggcgagggcgagaa 180 |||||||||||||||||||||| Sbjct: 1326319 acctggccggcgagggcgagaa 1326298
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 379 gtcggtgaacggcgggcgggcgttga 404 |||||||||||||| ||||||||||| Sbjct: 73053 gtcggtgaacggcgcgcgggcgttga 73028
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 379 gtcggtgaacggcgggcgggcgttga 404 |||||||||||||| ||||||||||| Sbjct: 40669 gtcggtgaacggcgcgcgggcgttga 40694
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence Length = 182756 Score = 42.1 bits (21), Expect = 1.9 Identities = 48/57 (84%) Strand = Plus / Plus Query: 137 ggcggcgacaagtaccggtctcacctggccggcgagggcgagaagaacaccgtgtgg 193 ||||| |||||||||||||| | || ||||||||| |||||| ||||||||||| Sbjct: 123052 ggcggggacaagtaccggtcgttcatgtacggcgagggggagaaggacaccgtgtgg 123108 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 166 cggcgagggcgagaagaacaccgtgtgg 193 ||||||||| |||||| ||||||||||| Sbjct: 140736 cggcgagggagagaaggacaccgtgtgg 140709
>dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C11 Length = 139399 Score = 42.1 bits (21), Expect = 1.9 Identities = 48/57 (84%) Strand = Plus / Plus Query: 137 ggcggcgacaagtaccggtctcacctggccggcgagggcgagaagaacaccgtgtgg 193 ||||| |||||||||||||| | || ||||||||| |||||| ||||||||||| Sbjct: 76649 ggcggggacaagtaccggtcgttcatgtacggcgagggggagaaggacaccgtgtgg 76705 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 166 cggcgagggcgagaagaacaccgtgtgg 193 ||||||||| |||||| ||||||||||| Sbjct: 94333 cggcgagggagagaaggacaccgtgtgg 94306
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 cggtgagccccggccggttca 374 ||||||||||||||||||||| Sbjct: 3300459 cggtgagccccggccggttca 3300479
>emb|X16648.1|HVPR1 Barley fungal pathogen induced mRNA for pathogen-related protein Length = 864 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 402 tgacgggggaggagacgctggccatgggcagctacaacgcg 442 ||||| |||||||| | ||||||||||| ||||||||||| Sbjct: 324 tgacgcgggaggaggtgatggccatgggcggctacaacgcg 364
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 caaggcccgcatcgaggacttcaa 351 |||||||||||||||||| ||||| Sbjct: 872381 caaggcccgcatcgaggaattcaa 872404
>ref|XM_367817.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG07721.4) partial mRNA Length = 1899 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 gccgccgagacgttcgagtc 507 |||||||||||||||||||| Sbjct: 1782 gccgccgagacgttcgagtc 1801
>gb|AC134577.4| Mus musculus BAC clone RP24-79G11 from chromosome 14, complete sequence Length = 189085 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gagactacaacccacagcac 42 |||||||||||||||||||| Sbjct: 546 gagactacaacccacagcac 527
>gb|AC142114.3| Mus musculus BAC clone RP23-421C24 from chromosome 14, complete sequence Length = 196408 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gagactacaacccacagcac 42 |||||||||||||||||||| Sbjct: 133798 gagactacaacccacagcac 133779
>ref|XM_548544.2| PREDICTED: Canis familiaris similar to solute carrier family 15, member 4 (LOC491423), mRNA Length = 1986 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 417 cgctggccatgggcagctacaacgcgct 444 ||||||||||||||| || ||||||||| Sbjct: 881 cgctggccatgggcacctccaacgcgct 908
>gb|AY230397.1| Triticum aestivum clone 1Nb-H10 FCA protein (Fca) mRNA, partial cds Length = 2234 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ggccggaggggtcgctggag 280 |||||||||||||||||||| Sbjct: 29 ggccggaggggtcgctggag 10
>ref|XM_751203.1| Ustilago maydis 521 hypothetical protein (UM00149.1) partial mRNA Length = 5757 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 tcctcgcacgacctcttccg 525 |||||||||||||||||||| Sbjct: 420 tcctcgcacgacctcttccg 439
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 gcgagaagaacaccgtgtggcggc 197 ||||||||||||||||||| |||| Sbjct: 4198483 gcgagaagaacaccgtgtgccggc 4198460
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 cgccgcccacgtacgacgccgtga 227 |||||||||||||||| ||||||| Sbjct: 1725242 cgccgcccacgtacgatgccgtga 1725265
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 caaggcccgcatcgaggacttcaa 351 |||||||||||||||||| ||||| Sbjct: 185968 caaggcccgcatcgaggaattcaa 185991
>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14 Length = 320050 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 caaggcccgcatcgaggacttcaa 351 |||||||||||||||||| ||||| Sbjct: 205430 caaggcccgcatcgaggaattcaa 205453
>emb|AJ000977.1|RSCHEMOOP Rhodobacter sphaeroides DNA for second chemotaxis operon and flanking genes Length = 10434 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 450 cgagcccgatcctgccgggcgccg 473 |||||||||||||| ||||||||| Sbjct: 2313 cgagcccgatcctgacgggcgccg 2336
>gb|AC011905.4| Drosophila melanogaster 3L BAC RP98-27A3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 192681 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 tcgaggacttcaagtcggtg 358 |||||||||||||||||||| Sbjct: 34808 tcgaggacttcaagtcggtg 34827
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggcgagggcgagaagaacac 186 |||||||||||||||||||| Sbjct: 3144418 ggcgagggcgagaagaacac 3144437
>gb|AY118938.1| Drosophila melanogaster LD24696 full insert cDNA Length = 1306 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 gtcgcacaaggcccgcatcgagga 345 |||| ||||||||||||||||||| Sbjct: 894 gtcgaacaaggcccgcatcgagga 917
>gb|AC010006.8| Drosophila melanogaster 3L BAC RP98-20A11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169735 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 tcgaggacttcaagtcggtg 358 |||||||||||||||||||| Sbjct: 18767 tcgaggacttcaagtcggtg 18748
>ref|NM_206244.1| Drosophila melanogaster CG33232-PC, isoform C (CG33232) mRNA, complete cds Length = 4420 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 tcgaggacttcaagtcggtg 358 |||||||||||||||||||| Sbjct: 1389 tcgaggacttcaagtcggtg 1408
>ref|NM_206246.1| Drosophila melanogaster CG33232-PA, isoform A (CG33232) mRNA, complete cds Length = 4402 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 tcgaggacttcaagtcggtg 358 |||||||||||||||||||| Sbjct: 1364 tcgaggacttcaagtcggtg 1383
>ref|NM_206245.1| Drosophila melanogaster CG33232-PB, isoform B (CG33232) mRNA, complete cds Length = 4415 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 tcgaggacttcaagtcggtg 358 |||||||||||||||||||| Sbjct: 1377 tcgaggacttcaagtcggtg 1396
>ref|NM_001031933.1| Drosophila melanogaster CG33232-PD, isoform D (CG33232) mRNA, complete cds Length = 4698 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 tcgaggacttcaagtcggtg 358 |||||||||||||||||||| Sbjct: 1660 tcgaggacttcaagtcggtg 1679
>ref|NM_136391.2| Drosophila melanogaster CG9436-RA (CG9436), mRNA Length = 1286 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 gtcgcacaaggcccgcatcgagga 345 |||| ||||||||||||||||||| Sbjct: 892 gtcgaacaaggcccgcatcgagga 915
>gb|AY058783.1| Drosophila melanogaster SD07766 full length cDNA Length = 3449 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 tcgaggacttcaagtcggtg 358 |||||||||||||||||||| Sbjct: 389 tcgaggacttcaagtcggtg 408
>gb|AC008340.5| Drosophila melanogaster, chromosome 2R, region 42D-42E, BAC clone BACR07J20, complete sequence Length = 181771 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 gtcgcacaaggcccgcatcgagga 345 |||| ||||||||||||||||||| Sbjct: 51559 gtcgaacaaggcccgcatcgagga 51536
>gb|AF399932.1|AF399932 Xanthomonas oryzae RecA gene cluster, complete sequence Length = 4188 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ggcgagggcgagaagaacac 186 |||||||||||||||||||| Sbjct: 1920 ggcgagggcgagaagaacac 1901
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 cgcgctgctcgcgagcccga 458 |||||||||||||||||||| Sbjct: 4444679 cgcgctgctcgcgagcccga 4444698 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 gcgctgctcgcgagcccgat 459 |||||||||||||||||||| Sbjct: 592899 gcgctgctcgcgagcccgat 592880
>gb|AC007549.5|AC007549 Drosophila melanogaster, chromosome 2R, region 42D-42E, BAC clone BACR04F03, complete sequence Length = 150587 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 gtcgcacaaggcccgcatcgagga 345 |||| ||||||||||||||||||| Sbjct: 648 gtcgaacaaggcccgcatcgagga 625
>gb|AE009663.1| Brucella melitensis 16M chromosome II, section 25 of 107 of the complete sequence Length = 12348 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 agcccgatcctgccgggcgc 471 |||||||||||||||||||| Sbjct: 8867 agcccgatcctgccgggcgc 8848
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 ccggtgcgtacgacgccgcc 490 |||||||||||||||||||| Sbjct: 2604830 ccggtgcgtacgacgccgcc 2604811
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 caaggcccgcatcgaggacttcaa 351 |||||||||||||||||| ||||| Sbjct: 2656214 caaggcccgcatcgaggagttcaa 2656191
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence Length = 1162204 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 agcccgatcctgccgggcgc 471 |||||||||||||||||||| Sbjct: 992857 agcccgatcctgccgggcgc 992876
>gb|AE005133.1| Halobacterium sp. NRC-1 section 164 of 170 of the complete genome Length = 12130 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 218 gacgccgtgaacagcctcttcgaggccg 245 |||||||||||||||| |||||| |||| Sbjct: 189 gacgccgtgaacagccacttcgacgccg 162
>gb|AE003790.2| Drosophila melanogaster chromosome 2R, section 7 of 73 of the complete sequence Length = 348873 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 gtcgcacaaggcccgcatcgagga 345 |||| ||||||||||||||||||| Sbjct: 87770 gtcgaacaaggcccgcatcgagga 87747
>gb|AE003475.4| Drosophila melanogaster chromosome 3L, section 9 of 83 of the complete sequence Length = 301691 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 tcgaggacttcaagtcggtg 358 |||||||||||||||||||| Sbjct: 31180 tcgaggacttcaagtcggtg 31199
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ggcgagggcgagaagaacac 186 |||||||||||||||||||| Sbjct: 3151725 ggcgagggcgagaagaacac 3151744
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 cgctggaggagacggtgcag 292 |||||||||||||||||||| Sbjct: 3840681 cgctggaggagacggtgcag 3840662
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 caaggcccgcatcgaggacttcaa 351 |||||||||||||||||| ||||| Sbjct: 636036 caaggcccgcatcgaggaattcaa 636059
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 gccgccgccgagacgttcga 504 |||||||||||||||||||| Sbjct: 2528699 gccgccgccgagacgttcga 2528680
>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence, strain 2308 Length = 1156948 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 agcccgatcctgccgggcgc 471 |||||||||||||||||||| Sbjct: 987613 agcccgatcctgccgggcgc 987632 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,396,917 Number of Sequences: 3902068 Number of extensions: 3396917 Number of successful extensions: 69251 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67253 Number of HSP's gapped (non-prelim): 1988 length of query: 545 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 522 effective length of database: 17,143,297,704 effective search space: 8948801401488 effective search space used: 8948801401488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)