ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart42d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464782.1| Oryza sativa (japonica cultivar-group), mRNA 444 e-121
2dbj|AK101441.1| Oryza sativa (japonica cultivar-group) cDNA clon... 444 e-121
3gb|AY105884.1| Zea mays PCO074613 mRNA sequence 281 1e-72
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 234 3e-58
5dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 234 3e-58
6gb|AC166937.2| Mus musculus BAC clone RP24-121A12 from chromosom... 48 0.031
7gb|AC152413.5| Mus musculus BAC clone RP23-431A21 from chromosom... 48 0.031
8gb|BC072620.1| Mus musculus cDNA sequence BC072620, mRNA (cDNA c... 46 0.12
9ref|NM_001013758.1| Mus musculus cDNA sequence BC072620 (BC07262... 46 0.12
10gb|AC122789.8| Mus musculus chromosome 5, clone RP24-258A20, com... 42 1.9
11gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 42 1.9
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.9
13emb|AL161444.18| Human DNA sequence from clone RP11-312C2 on chr... 42 1.9
14gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.9
15emb|X59474.1|MMHOXRNA M.musculus RNA for labial-like homeobox-co... 42 1.9
16emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome... 42 1.9
17emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 1.9
18gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.9
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
20dbj|AK121399.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
21gb|AY108810.1| Zea mays PCO079944 mRNA sequence 42 1.9
22emb|AL670290.13| Mouse DNA sequence from clone RP23-309M8 on chr... 42 1.9
23ref|NM_121973.3| Arabidopsis thaliana protein binding AT5G19680 ... 40 7.6
24ref|NM_183578.1| Oryza sativa (japonica cultivar-group), predic... 40 7.6
25ref|XM_467604.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.6
26ref|NM_213958.1| Sus scrofa Toll-like receptor 9 (TLR9), mRNA 40 7.6
27ref|XM_472099.1| Oryza sativa (japonica cultivar-group), predic... 40 7.6
28gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 7.6
29gb|DQ356948.1| Crocodilepox virus, complete genome 40 7.6
30gb|AY040616.1| Zea mays NADP-dependent malic enzyme mRNA, comple... 40 7.6
31ref|NM_001009285.1| Felis catus toll-like receptor 9 (TLR9), mRNA 40 7.6
32gb|DQ193517.1| Zea mays cultivar Bijoy Composite NADP-linked mal... 40 7.6
33gb|AY859728.1| Sus scrofa toll-like receptor 9 mRNA, complete cds 40 7.6
34gb|AY859727.1| Ovis aries toll-like receptor 9 mRNA, complete cds 40 7.6
35gb|AY859726.1| Bos taurus toll-like receptor 9 mRNA, complete cds 40 7.6
36gb|AY859724.1| Felis catus toll-like receptor 9 mRNA, complete cds 40 7.6
37gb|AC093341.5| Mus musculus chromosome 5, clone RP23-7E4, comple... 40 7.6
38emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete ch... 40 7.6
39emb|AL161717.15| Human DNA sequence from clone RP11-267P7 on chr... 40 7.6
40gb|AC116071.5| Rattus norvegicus 3 BAC CH230-230O7 (Children's H... 40 7.6
41gb|AY137581.1| Felis catus toll-like receptor 9 (tlr9) mRNA, com... 40 7.6
42emb|AJ509824.2|BTA509824 Bos taurus partial tlr9 gene for Toll-l... 40 7.6
43emb|AJ509825.1|BTA509825 Bos taurus partial mRNA for toll-like r... 40 7.6
44gb|DQ091291.1| Bison bison toll-like receptor 9 gene, partial cds 40 7.6
45gb|AE005901.1| Caulobacter crescentus CB15 section 227 of 359 of... 40 7.6
46gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 7.6
47ref|XM_695777.1| PREDICTED: Danio rerio similar to PH domain and... 40 7.6
48ref|NM_183081.1| Bos taurus toll-like receptor 9 (TLR9), mRNA 40 7.6
49gb|DQ058825.1| Bos taurus Toll-like receptor 9 gene, partial cds 40 7.6
50gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 7.6
51gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 7.6
52dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
53dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
54gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 7.6
55emb|BX831869.1|CNS0A1XH Arabidopsis thaliana Full-length cDNA Co... 40 7.6
56emb|BX830148.1|CNS0A03C Arabidopsis thaliana Full-length cDNA Co... 40 7.6
57emb|BX831181.1|CNS09ZJ5 Arabidopsis thaliana Full-length cDNA Co... 40 7.6
58gb|AF521880.1| Zea mays R2R3 Myb transcription factor MYB-IF35 m... 40 7.6
59dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
60gb|BT003139.1| Arabidopsis thaliana At5g19680 mRNA, complete cds 40 7.6
61gb|AY084519.1| Arabidopsis thaliana clone 110392 mRNA, complete ... 40 7.6
62gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.6
63gb|AF296838.1|T29J13 Arabidopsis thaliana BAC T29J13 40 7.6
64dbj|AP002070.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
65dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 7.6
66dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.6
67dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 7.6
68dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
69dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
70emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 7.6
71gb|AY103594.1| Zea mays PCO068859 mRNA sequence 40 7.6
72dbj|AB071394.1| Sus scrofa TLR9 mRNA for Toll-like receptor 9, c... 40 7.6
73gb|AC005747.1|AC005747 Homo sapiens chromosome 17, clone hRPK.15... 40 7.6
74gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.6
75emb|AJ748832.1| Streptomyces lividus lividomycin biosynthesis ge... 40 7.6
76emb|AL662974.3|OSJN00171 Oryza sativa genomic DNA, chromosome 4,... 40 7.6
77gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 7.6
78ref|NM_001011555.1| Ovis aries toll-like receptor 9 (TLR9), mRNA 40 7.6
79emb|AL731679.9| Mouse DNA sequence from clone RP23-33J13 on chro... 40 7.6
80dbj|AB018379.1| Thermus thermophilus gene for homocitrate syntha... 40 7.6 
>ref|XM_464782.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1637

 Score =  444 bits (224), Expect = e-121
 Identities = 389/444 (87%)
 Strand = Plus / Plus

                                                                       
Query: 116 gtgcctcgacctcacgagttgccagctgcacgatctgagtgaggtggagatcccgcccac 175
           |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 137 gtgcctcgacctgacgagctgccagctgcacgatctgagcgaggtggagatcccgcccac 196

                                                                       
Query: 176 cctggaggagctggaccttacggccaaccgtctcgccgcagtcgacccccgtatcggcca 235
           |||||||||||| || || ||||| ||||| |||||||| ||||||||||| ||||||| 
Sbjct: 197 cctggaggagctcgaactcacggcgaaccgcctcgccgccgtcgacccccgcatcggccg 256

                                                                       
Query: 236 cctccctcgcctccgcaaaatctcgttccgccagaatctcctcgacgacgacgccgtcgc 295
           ||||||  ||||||||||  |||| ||||||||||| ||||||||||||| |||||||||
Sbjct: 257 cctcccgggcctccgcaagctctccttccgccagaacctcctcgacgacgccgccgtcgc 316

                                                                       
Query: 296 gcccctctttacctgggatgccatcgctggcttacaggagatagtccttagagataacaa 355
           ||||||||  |||||||  | |||||||||  | |||||| | ||| |||||||||||||
Sbjct: 317 gcccctctccacctgggccgacatcgctgggctgcaggagttggtctttagagataacaa 376

                                                                       
Query: 356 gcttacaaagatccctgatgccagcatcttcaagggtcttctggtgtttgatgtttcttt 415
            ||||||| ||| |||||||||||||||||||| || |||||||| |||||||| |||||
Sbjct: 377 acttacaacgattcctgatgccagcatcttcaaaggccttctggtctttgatgtatcttt 436

                                                                       
Query: 416 caatgagttatcatccttgaatgggttatccaaggtttccagcacagtgaaagaactcta 475
           ||||||| |||| ||||| || ||| | |||||||||||||||||| |||| ||||||||
Sbjct: 437 caatgagatatcttccttaaaggggctgtccaaggtttccagcacactgaaggaactcta 496

                                                                       
Query: 476 cgtttcaaagaacgaagttccaaagatggaagaacttgaacatttccacgcattagaaat 535
            ||||||||||| |||||| |||||||||| ||||| ||||| || || |||||| ||||
Sbjct: 497 tgtttcaaagaatgaagttgcaaagatggaggaactcgaacactttcatgcattacaaat 556

                                   
Query: 536 gcttgaacttggtagcaatagatt 559
            ||||||||||||||||| |||||
Sbjct: 557 tcttgaacttggtagcaacagatt 580
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>dbj|AK101441.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039E09, full
           insert sequence
          Length = 1635

 Score =  444 bits (224), Expect = e-121
 Identities = 389/444 (87%)
 Strand = Plus / Plus

                                                                       
Query: 116 gtgcctcgacctcacgagttgccagctgcacgatctgagtgaggtggagatcccgcccac 175
           |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 135 gtgcctcgacctgacgagctgccagctgcacgatctgagcgaggtggagatcccgcccac 194

                                                                       
Query: 176 cctggaggagctggaccttacggccaaccgtctcgccgcagtcgacccccgtatcggcca 235
           |||||||||||| || || ||||| ||||| |||||||| ||||||||||| ||||||| 
Sbjct: 195 cctggaggagctcgaactcacggcgaaccgcctcgccgccgtcgacccccgcatcggccg 254

                                                                       
Query: 236 cctccctcgcctccgcaaaatctcgttccgccagaatctcctcgacgacgacgccgtcgc 295
           ||||||  ||||||||||  |||| ||||||||||| ||||||||||||| |||||||||
Sbjct: 255 cctcccgggcctccgcaagctctccttccgccagaacctcctcgacgacgccgccgtcgc 314

                                                                       
Query: 296 gcccctctttacctgggatgccatcgctggcttacaggagatagtccttagagataacaa 355
           ||||||||  |||||||  | |||||||||  | |||||| | ||| |||||||||||||
Sbjct: 315 gcccctctccacctgggccgacatcgctgggctgcaggagttggtctttagagataacaa 374

                                                                       
Query: 356 gcttacaaagatccctgatgccagcatcttcaagggtcttctggtgtttgatgtttcttt 415
            ||||||| ||| |||||||||||||||||||| || |||||||| |||||||| |||||
Sbjct: 375 acttacaacgattcctgatgccagcatcttcaaaggccttctggtctttgatgtatcttt 434

                                                                       
Query: 416 caatgagttatcatccttgaatgggttatccaaggtttccagcacagtgaaagaactcta 475
           ||||||| |||| ||||| || ||| | |||||||||||||||||| |||| ||||||||
Sbjct: 435 caatgagatatcttccttaaaggggctgtccaaggtttccagcacactgaaggaactcta 494

                                                                       
Query: 476 cgtttcaaagaacgaagttccaaagatggaagaacttgaacatttccacgcattagaaat 535
            ||||||||||| |||||| |||||||||| ||||| ||||| || || |||||| ||||
Sbjct: 495 tgtttcaaagaatgaagttgcaaagatggaggaactcgaacactttcatgcattacaaat 554

                                   
Query: 536 gcttgaacttggtagcaatagatt 559
            ||||||||||||||||| |||||
Sbjct: 555 tcttgaacttggtagcaacagatt 578
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>gb|AY105884.1| Zea mays PCO074613 mRNA sequence
          Length = 1240

 Score =  281 bits (142), Expect = 1e-72
 Identities = 367/442 (83%)
 Strand = Plus / Plus

                                                                       
Query: 119 cctcgacctcacgagttgccagctgcacgatctgagtgaggtggagatcccgcccaccct 178
           ||||||||| ||||| | ||||||||||||||| || |||||||||||||| ||||| ||
Sbjct: 34  cctcgacctgacgagctaccagctgcacgatctaagcgaggtggagatcccacccacgct 93

                                                                       
Query: 179 ggaggagctggaccttacggccaaccgtctcgccgcagtcgacccccgtatcggccacct 238
           ||||||| | ||||| || |||||||| ||| |  | || || || || |||||||| ||
Sbjct: 94  ggaggaggtcgacctcaccgccaaccgcctctcttctgttgatcctcgcatcggccaact 153

                                                                       
Query: 239 ccctcgcctccgcaaaatctcgttccgccagaatctcctcgacgacgacgccgtcgcgcc 298
           ||| |  ||||||||  |||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct: 154 cccccatctccgcaagctctcattccgccagaacctcctcgacgatgacgccgtcgcgcc 213

                                                                       
Query: 299 cctctttacctgggatgccatcgctggcttacaggagatagtccttagagataacaagct 358
            |||    ||||||| || || || || ||  ||||| | ||||||||||||||||| ||
Sbjct: 214 actcacgtcctgggaggctattgccgggttgaaggagttcgtccttagagataacaaact 273

                                                                       
Query: 359 tacaaagatccctgatgccagcatcttcaagggtcttctggtgtttgatgtttctttcaa 418
           ||||| ||| ||||||||  |||| ||||||| |||||||||||| ||||| ||||||||
Sbjct: 274 tacaaggattcctgatgctggcatattcaaggatcttctggtgttcgatgtatctttcaa 333

                                                                       
Query: 419 tgagttatcatccttgaatgggttatccaaggtttccagcacagtgaaagaactctacgt 478
           |||| |||| || |||| |||  | ||||||||||||| || | |||| ||||| || ||
Sbjct: 334 tgagatatcttctttgactggtctgtccaaggtttccatcaaattgaaggaactttatgt 393

                                                                       
Query: 479 ttcaaagaacgaagttccaaagatggaagaacttgaacatttccacgcattagaaatgct 538
           |||||| || |||||| ||||||||||||| |||||||||||||| ||  | ||||| ||
Sbjct: 394 ttcaaaaaatgaagttgcaaagatggaagagcttgaacatttccatgcgctggaaattct 453

                                 
Query: 539 tgaacttggtagcaatagatta 560
           ||||||||||||||| ||||||
Sbjct: 454 tgaacttggtagcaacagatta 475
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  234 bits (118), Expect = 3e-58
 Identities = 187/210 (89%)
 Strand = Plus / Plus

                                                                           
Query: 116     gtgcctcgacctcacgagttgccagctgcacgatctgagtgaggtggagatcccgcccac 175
               |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7315630 gtgcctcgacctgacgagctgccagctgcacgatctgagcgaggtggagatcccgcccac 7315689

                                                                           
Query: 176     cctggaggagctggaccttacggccaaccgtctcgccgcagtcgacccccgtatcggcca 235
               |||||||||||| || || ||||| ||||| |||||||| ||||||||||| ||||||| 
Sbjct: 7315690 cctggaggagctcgaactcacggcgaaccgcctcgccgccgtcgacccccgcatcggccg 7315749

                                                                           
Query: 236     cctccctcgcctccgcaaaatctcgttccgccagaatctcctcgacgacgacgccgtcgc 295
               ||||||  ||||||||||  |||| ||||||||||| ||||||||||||| |||||||||
Sbjct: 7315750 cctcccgggcctccgcaagctctccttccgccagaacctcctcgacgacgccgccgtcgc 7315809

                                             
Query: 296     gcccctctttacctgggatgccatcgctgg 325
               ||||||||  |||||||  | |||||||||
Sbjct: 7315810 gcccctctccacctgggccgacatcgctgg 7315839



 Score =  226 bits (114), Expect = 6e-56
 Identities = 201/230 (87%)
 Strand = Plus / Plus

                                                                           
Query: 330     caggagatagtccttagagataacaagcttacaaagatccctgatgccagcatcttcaag 389
               |||||| | ||| ||||||||||||| ||||||| ||| |||||||||||||||||||| 
Sbjct: 7316429 caggagttggtctttagagataacaaacttacaacgattcctgatgccagcatcttcaaa 7316488

                                                                           
Query: 390     ggtcttctggtgtttgatgtttctttcaatgagttatcatccttgaatgggttatccaag 449
               || |||||||| |||||||| |||||||||||| |||| ||||| || ||| | ||||||
Sbjct: 7316489 ggccttctggtctttgatgtatctttcaatgagatatcttccttaaaggggctgtccaag 7316548

                                                                           
Query: 450     gtttccagcacagtgaaagaactctacgtttcaaagaacgaagttccaaagatggaagaa 509
               |||||||||||| |||| |||||||| ||||||||||| |||||| |||||||||| |||
Sbjct: 7316549 gtttccagcacactgaaggaactctatgtttcaaagaatgaagttgcaaagatggaggaa 7316608

                                                                 
Query: 510     cttgaacatttccacgcattagaaatgcttgaacttggtagcaatagatt 559
               || ||||| || || |||||| |||| ||||||||||||||||| |||||
Sbjct: 7316609 ctcgaacactttcatgcattacaaattcttgaacttggtagcaacagatt 7316658



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 275      cctcgacgacgacgccgtcg 294
                ||||||||||||||||||||
Sbjct: 30404587 cctcgacgacgacgccgtcg 30404568
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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score =  234 bits (118), Expect = 3e-58
 Identities = 187/210 (89%)
 Strand = Plus / Plus

                                                                         
Query: 116   gtgcctcgacctcacgagttgccagctgcacgatctgagtgaggtggagatcccgcccac 175
             |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 91438 gtgcctcgacctgacgagctgccagctgcacgatctgagcgaggtggagatcccgcccac 91497

                                                                         
Query: 176   cctggaggagctggaccttacggccaaccgtctcgccgcagtcgacccccgtatcggcca 235
             |||||||||||| || || ||||| ||||| |||||||| ||||||||||| ||||||| 
Sbjct: 91498 cctggaggagctcgaactcacggcgaaccgcctcgccgccgtcgacccccgcatcggccg 91557

                                                                         
Query: 236   cctccctcgcctccgcaaaatctcgttccgccagaatctcctcgacgacgacgccgtcgc 295
             ||||||  ||||||||||  |||| ||||||||||| ||||||||||||| |||||||||
Sbjct: 91558 cctcccgggcctccgcaagctctccttccgccagaacctcctcgacgacgccgccgtcgc 91617

                                           
Query: 296   gcccctctttacctgggatgccatcgctgg 325
             ||||||||  |||||||  | |||||||||
Sbjct: 91618 gcccctctccacctgggccgacatcgctgg 91647



 Score =  226 bits (114), Expect = 6e-56
 Identities = 201/230 (87%)
 Strand = Plus / Plus

                                                                         
Query: 330   caggagatagtccttagagataacaagcttacaaagatccctgatgccagcatcttcaag 389
             |||||| | ||| ||||||||||||| ||||||| ||| |||||||||||||||||||| 
Sbjct: 92237 caggagttggtctttagagataacaaacttacaacgattcctgatgccagcatcttcaaa 92296

                                                                         
Query: 390   ggtcttctggtgtttgatgtttctttcaatgagttatcatccttgaatgggttatccaag 449
             || |||||||| |||||||| |||||||||||| |||| ||||| || ||| | ||||||
Sbjct: 92297 ggccttctggtctttgatgtatctttcaatgagatatcttccttaaaggggctgtccaag 92356

                                                                         
Query: 450   gtttccagcacagtgaaagaactctacgtttcaaagaacgaagttccaaagatggaagaa 509
             |||||||||||| |||| |||||||| ||||||||||| |||||| |||||||||| |||
Sbjct: 92357 gtttccagcacactgaaggaactctatgtttcaaagaatgaagttgcaaagatggaggaa 92416

                                                               
Query: 510   cttgaacatttccacgcattagaaatgcttgaacttggtagcaatagatt 559
             || ||||| || || |||||| |||| ||||||||||||||||| |||||
Sbjct: 92417 ctcgaacactttcatgcattacaaattcttgaacttggtagcaacagatt 92466
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>gb|AC166937.2| Mus musculus BAC clone RP24-121A12 from chromosome 10, complete
             sequence
          Length = 183115

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 170   gcccaccctggaggagctggacct 193
             ||||||||||||||||||||||||
Sbjct: 48841 gcccaccctggaggagctggacct 48864
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>gb|AC152413.5| Mus musculus BAC clone RP23-431A21 from chromosome 10, complete
             sequence
          Length = 195951

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 170   gcccaccctggaggagctggacct 193
             ||||||||||||||||||||||||
Sbjct: 85961 gcccaccctggaggagctggacct 85938
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>gb|BC072620.1| Mus musculus cDNA sequence BC072620, mRNA (cDNA clone MGC:99885
           IMAGE:6815693), complete cds
          Length = 3447

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 171 cccaccctggaggagctggacct 193
           |||||||||||||||||||||||
Sbjct: 365 cccaccctggaggagctggacct 387
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>ref|NM_001013758.1| Mus musculus cDNA sequence BC072620 (BC072620), mRNA
          Length = 3447

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 171 cccaccctggaggagctggacct 193
           |||||||||||||||||||||||
Sbjct: 365 cccaccctggaggagctggacct 387
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>gb|AC122789.8| Mus musculus chromosome 5, clone RP24-258A20, complete sequence
          Length = 182866

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 355   agcttacaaagatccctgatg 375
             |||||||||||||||||||||
Sbjct: 77354 agcttacaaagatccctgatg 77374
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 168     ccgcccaccctggaggagctg 188
               |||||||||||||||||||||
Sbjct: 1361368 ccgcccaccctggaggagctg 1361348
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 271      atctcctcgacgacgacgccg 291
                |||||||||||||||||||||
Sbjct: 12533818 atctcctcgacgacgacgccg 12533838
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>emb|AL161444.18| Human DNA sequence from clone RP11-312C2 on chromosome 9, complete
              sequence
          Length = 150563

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 331    aggagatagtccttagagata 351
              |||||||||||||||||||||
Sbjct: 120882 aggagatagtccttagagata 120862
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>gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1125B03,
             from chromosome 3, complete sequence
          Length = 124550

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 271   atctcctcgacgacgacgccg 291
             |||||||||||||||||||||
Sbjct: 54123 atctcctcgacgacgacgccg 54103
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>emb|X59474.1|MMHOXRNA M.musculus RNA for labial-like homeobox-containing gene Hox 2.9
          Length = 1759

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 158  ggtggagatcccgcccaccctggag 182
            |||||||||| ||||||||||||||
Sbjct: 1200 ggtggagatcgcgcccaccctggag 1224
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>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13
          Length = 349306

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 168    ccgcccaccctggaggagctg 188
              |||||||||||||||||||||
Sbjct: 328094 ccgcccaccctggaggagctg 328074
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>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             5/14
          Length = 299450

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 168   ccgcccaccctggaggagctg 188
             |||||||||||||||||||||
Sbjct: 48523 ccgcccaccctggaggagctg 48503
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>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0030D15, from chromosome 3, complete sequence
          Length = 151972

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 271    atctcctcgacgacgacgccg 291
              |||||||||||||||||||||
Sbjct: 143171 atctcctcgacgacgacgccg 143151
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 271      atctcctcgacgacgacgccg 291
                |||||||||||||||||||||
Sbjct: 12530581 atctcctcgacgacgacgccg 12530601
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>dbj|AK121399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131M07, full
           insert sequence
          Length = 2101

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 271 atctcctcgacgacgacgccg 291
           |||||||||||||||||||||
Sbjct: 347 atctcctcgacgacgacgccg 327
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>gb|AY108810.1| Zea mays PCO079944 mRNA sequence
          Length = 536

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 95  gggggtgcaggaggcggagtt 115
           |||||||||||||||||||||
Sbjct: 179 gggggtgcaggaggcggagtt 159
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>emb|AL670290.13| Mouse DNA sequence from clone RP23-309M8 on chromosome 4, complete
              sequence
          Length = 174638

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 145    acgatctgagtgaggtggaga 165
              |||||||||||||||||||||
Sbjct: 122021 acgatctgagtgaggtggaga 122041
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>ref|NM_121973.3| Arabidopsis thaliana protein binding AT5G19680 mRNA, complete cds
          Length = 1413

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 183 gagctggaccttacggccaaccgt 206
           ||||||||||||||||| ||||||
Sbjct: 176 gagctggaccttacggcgaaccgt 199
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>ref|NM_183578.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 696

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 cctcgacgacgacgccgtcg 294
           ||||||||||||||||||||
Sbjct: 599 cctcgacgacgacgccgtcg 618
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>ref|XM_467604.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 288

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 275 cctcgacgacgacgccgtcg 294
           ||||||||||||||||||||
Sbjct: 281 cctcgacgacgacgccgtcg 262
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>ref|NM_213958.1| Sus scrofa Toll-like receptor 9 (TLR9), mRNA
          Length = 3329

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 gcccaccctggaggagctggacct 193
           ||||||||||||||||||| ||||
Sbjct: 417 gcccaccctggaggagctgaacct 440
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>ref|XM_472099.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4419

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  cctcgacgacgacgccgtcg 294
            ||||||||||||||||||||
Sbjct: 3976 cctcgacgacgacgccgtcg 3957



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  cctcgacgacgacgccgtcg 294
            ||||||||||||||||||||
Sbjct: 3898 cctcgacgacgacgccgtcg 3879
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 278     cgacgacgacgccgtcgcgc 297
               ||||||||||||||||||||
Sbjct: 1694883 cgacgacgacgccgtcgcgc 1694902
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>gb|DQ356948.1| Crocodilepox virus, complete genome
          Length = 190054

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    tcctcgacgacgacgccgtc 293
              ||||||||||||||||||||
Sbjct: 157280 tcctcgacgacgacgccgtc 157261
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>gb|AY040616.1| Zea mays NADP-dependent malic enzyme mRNA, complete cds; nuclear
           gene for plastid product
          Length = 2225

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 tcctcgacgacgacgccgtc 293
           ||||||||||||||||||||
Sbjct: 301 tcctcgacgacgacgccgtc 282
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>ref|NM_001009285.1| Felis catus toll-like receptor 9 (TLR9), mRNA
          Length = 3332

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 gcccaccctggaggagctggacct 193
           ||||||||||||||||||| ||||
Sbjct: 453 gcccaccctggaggagctgaacct 476
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>gb|DQ193517.1| Zea mays cultivar Bijoy Composite NADP-linked malic enzyme mRNA,
           partial cds
          Length = 649

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 tcctcgacgacgacgccgtc 293
           ||||||||||||||||||||
Sbjct: 245 tcctcgacgacgacgccgtc 226
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>gb|AY859728.1| Sus scrofa toll-like receptor 9 mRNA, complete cds
          Length = 3352

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 gcccaccctggaggagctggacct 193
           ||||||||||||||||||| ||||
Sbjct: 439 gcccaccctggaggagctgaacct 462
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>gb|AY859727.1| Ovis aries toll-like receptor 9 mRNA, complete cds
          Length = 3199

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 gcccaccctggaggagctggacct 193
           ||||||||||||||||||| ||||
Sbjct: 454 gcccaccctggaggagctgaacct 477
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>gb|AY859726.1| Bos taurus toll-like receptor 9 mRNA, complete cds
          Length = 3191

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 gcccaccctggaggagctggacct 193
           ||||||||||||||||||| ||||
Sbjct: 446 gcccaccctggaggagctgaacct 469
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>gb|AY859724.1| Felis catus toll-like receptor 9 mRNA, complete cds
          Length = 3235

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 gcccaccctggaggagctggacct 193
           ||||||||||||||||||| ||||
Sbjct: 452 gcccaccctggaggagctgaacct 475
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>gb|AC093341.5| Mus musculus chromosome 5, clone RP23-7E4, complete sequence
          Length = 220668

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 469    aactctacgtttcaaagaac 488
              ||||||||||||||||||||
Sbjct: 153131 aactctacgtttcaaagaac 153112
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>emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete chromosome; segment 5/12
          Length = 299350

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 276    ctcgacgacgacgccgtcgcgccc 299
              ||||||||||||| ||||||||||
Sbjct: 263566 ctcgacgacgacggcgtcgcgccc 263543
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>emb|AL161717.15| Human DNA sequence from clone RP11-267P7 on chromosome 13, complete
             sequence
          Length = 103720

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   gcccctctttacctgggatg 315
             ||||||||||||||||||||
Sbjct: 43564 gcccctctttacctgggatg 43583
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>gb|AC116071.5| Rattus norvegicus 3 BAC CH230-230O7 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 224778

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 434   gaatgggttatccaaggtttccag 457
             ||||||| ||||||||||||||||
Sbjct: 75616 gaatggggtatccaaggtttccag 75593
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>gb|AY137581.1| Felis catus toll-like receptor 9 (tlr9) mRNA, complete cds
          Length = 3332

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 gcccaccctggaggagctggacct 193
           ||||||||||||||||||| ||||
Sbjct: 453 gcccaccctggaggagctgaacct 476
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>emb|AJ509824.2|BTA509824 Bos taurus partial tlr9 gene for Toll-like receptor 9
          Length = 4505

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 170  gcccaccctggaggagctggacct 193
            ||||||||||||||||||| ||||
Sbjct: 1726 gcccaccctggaggagctgaacct 1749
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>emb|AJ509825.1|BTA509825 Bos taurus partial mRNA for toll-like receptor 9 (tlr9 gene)
          Length = 3121

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 gcccaccctggaggagctggacct 193
           ||||||||||||||||||| ||||
Sbjct: 342 gcccaccctggaggagctgaacct 365
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>gb|DQ091291.1| Bison bison toll-like receptor 9 gene, partial cds
          Length = 254

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 gcccaccctggaggagctggacct 193
           ||||||||||||||||||| ||||
Sbjct: 174 gcccaccctggaggagctgaacct 197
to top
>gb|AE005901.1| Caulobacter crescentus CB15 section 227 of 359 of the complete genome
          Length = 11136

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 272  tctcctcgacgacgacgccgtcgc 295
            ||||||||||| ||||||||||||
Sbjct: 5791 tctcctcgacgtcgacgccgtcgc 5814
to top
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 263    ccgccagaatctcctcgacg 282
              ||||||||||||||||||||
Sbjct: 595811 ccgccagaatctcctcgacg 595792
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>ref|XM_695777.1| PREDICTED: Danio rerio similar to PH domain and leucine rich repeat
           protein phosphatase-like (LOC572102), partial mRNA
          Length = 2821

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 172 ccaccctggaggagctggaccttacggccaac 203
           |||||||| ||||||||||||| |||| ||||
Sbjct: 939 ccaccctgcaggagctggacctgacgggcaac 970
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>ref|NM_183081.1| Bos taurus toll-like receptor 9 (TLR9), mRNA
          Length = 3265

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 gcccaccctggaggagctggacct 193
           ||||||||||||||||||| ||||
Sbjct: 486 gcccaccctggaggagctgaacct 509
to top
>gb|DQ058825.1| Bos taurus Toll-like receptor 9 gene, partial cds
          Length = 254

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 gcccaccctggaggagctggacct 193
           ||||||||||||||||||| ||||
Sbjct: 174 gcccaccctggaggagctgaacct 197
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 278     cgacgacgacgccgtcgcgc 297
               ||||||||||||||||||||
Sbjct: 2178652 cgacgacgacgccgtcgcgc 2178671
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 275     cctcgacgacgacgccgtcg 294
               ||||||||||||||||||||
Sbjct: 2133258 cctcgacgacgacgccgtcg 2133239
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 275      cctcgacgacgacgccgtcg 294
                ||||||||||||||||||||
Sbjct: 17438895 cctcgacgacgacgccgtcg 17438914



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 275      cctcgacgacgacgccgtcg 294
                ||||||||||||||||||||
Sbjct: 17438817 cctcgacgacgacgccgtcg 17438836
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 275      cctcgacgacgacgccgtcg 294
                ||||||||||||||||||||
Sbjct: 10401747 cctcgacgacgacgccgtcg 10401728
to top
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 273     ctcctcgacgacgacgccgt 292
               ||||||||||||||||||||
Sbjct: 2707470 ctcctcgacgacgacgccgt 2707451
to top
>emb|BX831869.1|CNS0A1XH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH35ZH04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1320

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 183 gagctggaccttacggccaaccgt 206
           ||||||||||||||||| ||||||
Sbjct: 160 gagctggaccttacggcgaaccgt 183
to top
>emb|BX830148.1|CNS0A03C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB62ZF07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1293

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 183 gagctggaccttacggccaaccgt 206
           ||||||||||||||||| ||||||
Sbjct: 175 gagctggaccttacggcgaaccgt 198
to top
>emb|BX831181.1|CNS09ZJ5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS66ZB10 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1318

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 183 gagctggaccttacggccaaccgt 206
           ||||||||||||||||| ||||||
Sbjct: 151 gagctggaccttacggcgaaccgt 174
to top
>gb|AF521880.1| Zea mays R2R3 Myb transcription factor MYB-IF35 mRNA, complete cds
          Length = 1038

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 277 tcgacgacgacgccgtcgcg 296
           ||||||||||||||||||||
Sbjct: 377 tcgacgacgacgccgtcgcg 358
to top
>dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0469E05
          Length = 160769

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   cctcgacgacgacgccgtcg 294
             ||||||||||||||||||||
Sbjct: 46707 cctcgacgacgacgccgtcg 46688
to top
>gb|BT003139.1| Arabidopsis thaliana At5g19680 mRNA, complete cds
          Length = 987

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 183 gagctggaccttacggccaaccgt 206
           ||||||||||||||||| ||||||
Sbjct: 121 gagctggaccttacggcgaaccgt 144
to top
>gb|AY084519.1| Arabidopsis thaliana clone 110392 mRNA, complete sequence
          Length = 1381

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 183 gagctggaccttacggccaaccgt 206
           ||||||||||||||||| ||||||
Sbjct: 173 gagctggaccttacggcgaaccgt 196
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 273     ctcctcgacgacgacgccgtcgcg 296
               ||||||||||||||||||| ||||
Sbjct: 4488326 ctcctcgacgacgacgccgccgcg 4488349
to top
>gb|AF296838.1|T29J13 Arabidopsis thaliana BAC T29J13
          Length = 100592

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 183   gagctggaccttacggccaaccgt 206
             ||||||||||||||||| ||||||
Sbjct: 38906 gagctggaccttacggcgaaccgt 38929
to top
>dbj|AP002070.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0511C01
          Length = 170402

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    cctcgacgacgacgccgtcg 294
              ||||||||||||||||||||
Sbjct: 108467 cctcgacgacgacgccgtcg 108448
to top
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 173     caccctggaggagctggacc 192
               ||||||||||||||||||||
Sbjct: 1795397 caccctggaggagctggacc 1795378
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 274     tcctcgacgacgacgccgtcgcgc 297
               |||||||||||||| |||||||||
Sbjct: 8911659 tcctcgacgacgacaccgtcgcgc 8911636
to top
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     cccaccctggaggagctgga 190
               ||||||||||||||||||||
Sbjct: 1661824 cccaccctggaggagctgga 1661805
to top
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0072H09
          Length = 160541

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   cctcgacgacgacgccgtcg 294
             ||||||||||||||||||||
Sbjct: 85447 cctcgacgacgacgccgtcg 85428
to top
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0617A09
          Length = 134804

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   cctcgacgacgacgccgtcg 294
             ||||||||||||||||||||
Sbjct: 10635 cctcgacgacgacgccgtcg 10616
to top
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    tcctcgacgacgacgccgtc 293
              ||||||||||||||||||||
Sbjct: 901285 tcctcgacgacgacgccgtc 901266
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>gb|AY103594.1| Zea mays PCO068859 mRNA sequence
          Length = 2404

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 tcctcgacgacgacgccgtc 293
           ||||||||||||||||||||
Sbjct: 360 tcctcgacgacgacgccgtc 341
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>dbj|AB071394.1| Sus scrofa TLR9 mRNA for Toll-like receptor 9, complete cds
          Length = 3329

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 gcccaccctggaggagctggacct 193
           ||||||||||||||||||| ||||
Sbjct: 417 gcccaccctggaggagctgaacct 440
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>gb|AC005747.1|AC005747 Homo sapiens chromosome 17, clone hRPK.150_K_15, complete sequence
          Length = 166701

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 88     cagggatgggggtgcaggaggcgg 111
              |||||||||||| |||||||||||
Sbjct: 100771 cagggatgggggagcaggaggcgg 100748
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 279     gacgacgacgccgtcgcgcc 298
               ||||||||||||||||||||
Sbjct: 2487737 gacgacgacgccgtcgcgcc 2487718



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 274     tcctcgacgacgacgccgtcgcgc 297
               |||||||||||||||||| |||||
Sbjct: 1143666 tcctcgacgacgacgccgccgcgc 1143643
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>emb|AJ748832.1| Streptomyces lividus lividomycin biosynthesis gene cluster
          Length = 40579

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   tcctcgacgacgacgccgtc 293
             ||||||||||||||||||||
Sbjct: 15906 tcctcgacgacgacgccgtc 15887
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>emb|AL662974.3|OSJN00171 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061G20,
             complete sequence
          Length = 191218

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   cctcgacgacgacgccgtcg 294
             ||||||||||||||||||||
Sbjct: 97661 cctcgacgacgacgccgtcg 97680



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   cctcgacgacgacgccgtcg 294
             ||||||||||||||||||||
Sbjct: 97583 cctcgacgacgacgccgtcg 97602
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 173     caccctggaggagctggacc 192
               ||||||||||||||||||||
Sbjct: 1471138 caccctggaggagctggacc 1471119
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>ref|NM_001011555.1| Ovis aries toll-like receptor 9 (TLR9), mRNA
          Length = 3199

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 170 gcccaccctggaggagctggacct 193
           ||||||||||||||||||| ||||
Sbjct: 454 gcccaccctggaggagctgaacct 477
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>emb|AL731679.9| Mouse DNA sequence from clone RP23-33J13 on chromosome X, complete
             sequence
          Length = 228007

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 407   tgtttctttcaatgagttat 426
             ||||||||||||||||||||
Sbjct: 31023 tgtttctttcaatgagttat 31004
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>dbj|AB018379.1| Thermus thermophilus gene for homocitrate synthase, homoaconitate
            hydratase, and ORF, complete and partial cds
          Length = 3758

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  caccctggaggagctggacc 192
            ||||||||||||||||||||
Sbjct: 2113 caccctggaggagctggacc 2132


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,677,730
Number of Sequences: 3902068
Number of extensions: 4677730
Number of successful extensions: 97386
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96239
Number of HSP's gapped (non-prelim): 1146
length of query: 563
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 540
effective length of database: 17,143,297,704
effective search space: 9257380760160
effective search space used: 9257380760160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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