ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart42d09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 167 gcacaaagtgatggtgacgggcaccgtggacgccgagacgctcgtcaagaggctctgcaa 226 |||||| |||| |||||| ||||| ||||||| ||| ||||||||||||||||| | ||| Sbjct: 12881754 gcacaaggtgacggtgaccggcacggtggacggcgacacgctcgtcaagaggctgtacaa 12881695 Query: 227 gtctggcaagcaggc 241 ||| || |||||||| Sbjct: 12881694 gtccgggaagcaggc 12881680 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 59 gaccttggttctgagggtttccatccactgccatggctgcaagaagaagatccgcaaggt 118 |||| |||| |||||||| ||||||||||||| || |||||||||||| || | ||||| Sbjct: 12881977 gaccgtggtgctgagggtgtccatccactgcctcggatgcaagaagaaggtcaggaaggt 12881918 Query: 119 gctcaagagcatccaagg 136 ||||| ||||||| |||| Sbjct: 12881917 gctcaggagcatcgaagg 12881900
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 167 gcacaaagtgatggtgacgggcaccgtggacgccgagacgctcgtcaagaggctctgcaa 226 |||||| |||| |||||| ||||| ||||||| ||| ||||||||||||||||| | ||| Sbjct: 119970 gcacaaggtgacggtgaccggcacggtggacggcgacacgctcgtcaagaggctgtacaa 119911 Query: 227 gtctggcaagcaggc 241 ||| || |||||||| Sbjct: 119910 gtccgggaagcaggc 119896 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 59 gaccttggttctgagggtttccatccactgccatggctgcaagaagaagatccgcaaggt 118 |||| |||| |||||||| ||||||||||||| || |||||||||||| || | ||||| Sbjct: 120193 gaccgtggtgctgagggtgtccatccactgcctcggatgcaagaagaaggtcaggaaggt 120134 Query: 119 gctcaagagcatccaagg 136 ||||| ||||||| |||| Sbjct: 120133 gctcaggagcatcgaagg 120116
>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0094H06, from chromosome 3, complete sequence Length = 118075 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 167 gcacaaagtgatggtgacgggcaccgtggacgccgagacgctcgtcaagaggctctgcaa 226 |||||| |||| |||||| ||||| ||||||| ||| ||||||||||||||||| | ||| Sbjct: 57755 gcacaaggtgacggtgaccggcacggtggacggcgacacgctcgtcaagaggctgtacaa 57814 Query: 227 gtctggcaagcaggc 241 ||| || |||||||| Sbjct: 57815 gtccgggaagcaggc 57829 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Plus Query: 59 gaccttggttctgagggtttccatccactgccatggctgcaagaagaagatccgcaaggt 118 |||| |||| |||||||| ||||||||||||| || |||||||||||| || | ||||| Sbjct: 57532 gaccgtggtgctgagggtgtccatccactgcctcggatgcaagaagaaggtcaggaaggt 57591 Query: 119 gctcaagagcatccaagg 136 ||||| ||||||| |||| Sbjct: 57592 gctcaggagcatcgaagg 57609
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 167 gcacaaagtgatggtgacgggcaccgtggacgccgagacgctcgtcaagaggctctgcaa 226 |||||| |||| |||||| ||||| ||||||| ||| ||||||||||||||||| | ||| Sbjct: 12878517 gcacaaggtgacggtgaccggcacggtggacggcgacacgctcgtcaagaggctgtacaa 12878458 Query: 227 gtctggcaagcaggc 241 ||| || |||||||| Sbjct: 12878457 gtccgggaagcaggc 12878443 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 59 gaccttggttctgagggtttccatccactgccatggctgcaagaagaagatccgcaaggt 118 |||| |||| |||||||| ||||||||||||| || |||||||||||| || | ||||| Sbjct: 12878740 gaccgtggtgctgagggtgtccatccactgcctcggatgcaagaagaaggtcaggaaggt 12878681 Query: 119 gctcaagagcatccaagg 136 ||||| ||||||| |||| Sbjct: 12878680 gctcaggagcatcgaagg 12878663
>ref|XM_474174.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 420 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 327 gacgatgctgctgcggcggcgg 348 |||||||||||||||||||||| Sbjct: 307 gacgatgctgctgcggcggcgg 328
>gb|AC111653.8| Rattus norvegicus 2 BAC CH230-108E11 (Children's Hospital Oakland Research Institute) complete sequence Length = 247105 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 468 gagaagaaggaggctgagaaagaggaggcg 497 ||||||| |||||||||| ||||||||||| Sbjct: 87337 gagaagatggaggctgaggaagaggaggcg 87308
>ref|XM_966157.1| PREDICTED: Tribolium castaneum similar to CG4062-PA, isoform A (LOC659890), mRNA Length = 3141 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 470 gaagaaggaggctgagaaagag 491 |||||||||||||||||||||| Sbjct: 138 gaagaaggaggctgagaaagag 159
>emb|AL606446.1|OSJN00016 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F16, complete sequence Length = 119535 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 gacgatgctgctgcggcggcgg 348 |||||||||||||||||||||| Sbjct: 117079 gacgatgctgctgcggcggcgg 117058
>emb|AL663099.7| Mouse DNA sequence from clone DN-384L23 on chromosome 3 Contains a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene, two novel genes (4930406D18RIK) (4930431B09Rik), the 5' end of a novel gene (E130019M14RIK) and a CpG island, complete sequence Length = 177135 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 468 gagaagaaggaggctgagaaag 489 |||||||||||||||||||||| Sbjct: 110373 gagaagaaggaggctgagaaag 110352
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 gacgatgctgctgcggcggcgg 348 |||||||||||||||||||||| Sbjct: 33471200 gacgatgctgctgcggcggcgg 33471179
>gb|AY826943.1| Heterocapsa triquetra clone HTU20 unknown protein mRNA, partial cds Length = 923 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 471 aagaaggaggctgagaaagaggaggc 496 ||||||||||||||||| |||||||| Sbjct: 312 aagaaggaggctgagaaggaggaggc 337
>gb|U48596.1|RNU48596 Rattus norvegicus MAP kinase kinase kinase 1 (MEKK1) mRNA, complete cds Length = 5180 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 468 gagaagaaggaggctgagaaagaggaggcg 497 ||||||| |||||||||| ||||||||||| Sbjct: 3993 gagaagatggaggctgaggaagaggaggcg 4022
>emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13, complete sequence Length = 152264 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 gacgatgctgctgcggcggcgg 348 |||||||||||||||||||||| Sbjct: 47389 gacgatgctgctgcggcggcgg 47368
>ref|NM_053887.1| Rattus norvegicus mitogen activated protein kinase kinase kinase 1 (Map3k1), mRNA Length = 5180 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 468 gagaagaaggaggctgagaaagaggaggcg 497 ||||||| |||||||||| ||||||||||| Sbjct: 3993 gagaagatggaggctgaggaagaggaggcg 4022
>emb|AL606750.13| Mouse DNA sequence from clone RP23-335A19 on chromosome 3, complete sequence Length = 207366 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 468 gagaagaaggaggctgagaaag 489 |||||||||||||||||||||| Sbjct: 168113 gagaagaaggaggctgagaaag 168092
>gb|DQ213240.1| Taeniopygia guttata clone 0061P0006G03 RIKEN cDNA 2610511E22 gene-like mRNA, complete sequence Length = 1009 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 gaggtagatgcccagcagcac 170 ||||||||||||||||||||| Sbjct: 479 gaggtagatgcccagcagcac 459
>gb|DQ149987.1| Streptomyces neyagawaensis concanamycin A biosynthetic gene cluster, complete sequence Length = 99892 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 ccgtggacgccgagacgctcg 210 ||||||||||||||||||||| Sbjct: 63457 ccgtggacgccgagacgctcg 63477
>gb|AY691328.1| Danio rerio myosin VIb (myo6b) mRNA, complete cds Length = 4000 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 aagaagccggagcaggaggagacgg 426 ||||||| ||||||||||||||||| Sbjct: 2910 aagaagcaggagcaggaggagacgg 2934
>gb|AY618701.1| Danio rerio myosin VIb (myo6b) mRNA, complete cds Length = 3917 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 aagaagccggagcaggaggagacgg 426 ||||||| ||||||||||||||||| Sbjct: 2757 aagaagcaggagcaggaggagacgg 2781
>ref|XM_367592.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG07503.4) partial mRNA Length = 945 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 472 agaaggaggctgagaaagaggaggc 496 ||||||||||||||||| ||||||| Sbjct: 845 agaaggaggctgagaaaaaggaggc 869
>gb|BC017125.1| Mus musculus endoplasmic reticulum protein 29, mRNA (cDNA clone MGC:27552 IMAGE:4481563), complete cds Length = 1258 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 470 gaagaaggaggctgagaaagaggag 494 |||||||||||||||||| |||||| Sbjct: 893 gaagaaggaggctgagaaggaggag 917
>ref|NM_026129.2| Mus musculus endoplasmic reticulum protein 29 (Erp29), mRNA Length = 1258 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 470 gaagaaggaggctgagaaagaggag 494 |||||||||||||||||| |||||| Sbjct: 893 gaagaaggaggctgagaaggaggag 917
>gb|AC129215.3| Mus musculus BAC clone RP24-435H23 from chromosome 5, complete sequence Length = 140936 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 470 gaagaaggaggctgagaaagaggag 494 |||||||||||||||||| |||||| Sbjct: 78250 gaagaaggaggctgagaaggaggag 78226
>gb|AC093411.2| Homo sapiens chromosome 3 clone RP11-1C5, complete sequence Length = 173481 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 455 ggaagcagagtctgagaagaa 475 ||||||||||||||||||||| Sbjct: 36729 ggaagcagagtctgagaagaa 36709
>dbj|AK154539.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630045F24 product:endoplasmic reticulum protein 29, full insert sequence Length = 1138 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 470 gaagaaggaggctgagaaagaggag 494 |||||||||||||||||| |||||| Sbjct: 789 gaagaaggaggctgagaaggaggag 813
>dbj|AK165702.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:G630004M12 product:endoplasmic reticulum protein 29, full insert sequence Length = 3381 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 470 gaagaaggaggctgagaaagaggag 494 |||||||||||||||||| |||||| Sbjct: 793 gaagaaggaggctgagaaggaggag 817
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 aggcgtgcaggacgtggaggt 154 ||||||||||||||||||||| Sbjct: 4433451 aggcgtgcaggacgtggaggt 4433431
>dbj|AK168112.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730057O06 product:endoplasmic reticulum protein 29, full insert sequence Length = 1161 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 470 gaagaaggaggctgagaaagaggag 494 |||||||||||||||||| |||||| Sbjct: 813 gaagaaggaggctgagaaggaggag 837
>dbj|AK009881.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310047K12 product:endoplasmic retuclum protein 29, full insert sequence Length = 1148 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 470 gaagaaggaggctgagaaagaggag 494 |||||||||||||||||| |||||| Sbjct: 799 gaagaaggaggctgagaaggaggag 823
>emb|BX649242.6| Zebrafish DNA sequence from clone DKEY-264C3 in linkage group 17, complete sequence Length = 147772 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 402 aagaagccggagcaggaggagacgg 426 ||||||| ||||||||||||||||| Sbjct: 74244 aagaagcaggagcaggaggagacgg 74220
>dbj|AK013303.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810446M09 product:endoplasmic retuclum protein 29, full insert sequence Length = 1124 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 470 gaagaaggaggctgagaaagaggag 494 |||||||||||||||||| |||||| Sbjct: 776 gaagaaggaggctgagaaggaggag 800
>dbj|AK004795.1| Mus musculus adult male lung cDNA, RIKEN full-length enriched library, clone:1200015M03 product:endoplasmic retuclum protein 29, full insert sequence Length = 1145 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 470 gaagaaggaggctgagaaagaggag 494 |||||||||||||||||| |||||| Sbjct: 796 gaagaaggaggctgagaaggaggag 820
>gb|AC108029.3| Homo sapiens BAC clone RP11-88J6 from 4, complete sequence Length = 70132 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 467 tgagaagaaggaggctgagaaagaggagg 495 |||||||||||||| |||||| ||||||| Sbjct: 8055 tgagaagaaggaggatgagaaggaggagg 8083 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 468 gagaagaaggaggctgagaaagaggagg 495 |||||| |||||| |||||||||||||| Sbjct: 8017 gagaaggaggaggatgagaaagaggagg 8044
>ref|NM_001004110.1| Danio rerio myosin VIb (myo6b), mRNA Length = 3917 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 402 aagaagccggagcaggaggagacgg 426 ||||||| ||||||||||||||||| Sbjct: 2757 aagaagcaggagcaggaggagacgg 2781
>gb|AC155316.6| Mus musculus BAC clone RP23-181P9 from chromosome 5, complete sequence Length = 204809 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 470 gaagaaggaggctgagaaagaggag 494 |||||||||||||||||| |||||| Sbjct: 35288 gaagaaggaggctgagaaggaggag 35264
>ref|XM_479462.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1243 Score = 40.1 bits (20), Expect = 6.9 Identities = 50/60 (83%) Strand = Plus / Plus Query: 81 atccactgccatggctgcaagaagaagatccgcaaggtgctcaagagcatccaaggcgtg 140 ||||||||| | || |||||||||||| || ||||||||| ||| |||| |||||||| Sbjct: 170 atccactgcgagggttgcaagaagaaggtcaagaaggtgctccagaacatcgaaggcgtg 229
>ref|XM_476345.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1752 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 gcaagaagaagatccgcaag 116 |||||||||||||||||||| Sbjct: 1517 gcaagaagaagatccgcaag 1536
>gb|AY596544.1| Saccharum officinarum clone SCCCCL3140E04, complete sequence Length = 1525 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 aggacgatgctgctgcggcggcgg 348 ||||||| |||||||||||||||| Sbjct: 286 aggacgacgctgctgcggcggcgg 309
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cgtggacgccgagacgctcg 210 |||||||||||||||||||| Sbjct: 1149337 cgtggacgccgagacgctcg 1149356
>ref|XM_854907.1| PREDICTED: Canis familiaris similar to kelch-like, transcript variant 2 (LOC486433), mRNA Length = 2032 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ctggcaagcaggcactgcca 248 |||||||||||||||||||| Sbjct: 1943 ctggcaagcaggcactgcca 1924
>ref|XM_543559.2| PREDICTED: Canis familiaris similar to kelch-like, transcript variant 1 (LOC486433), mRNA Length = 2117 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ctggcaagcaggcactgcca 248 |||||||||||||||||||| Sbjct: 2028 ctggcaagcaggcactgcca 2009
>emb|AM039951.1| Xanthomonas campestris pv. vesicatoria plasmid pXCV183, complete genome Length = 182572 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 cgcaaggtgctcaagagcatccaa 134 ||||||||||||||| |||||||| Sbjct: 123480 cgcaaggtgctcaagggcatccaa 123503 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 cgcaaggtgctcaagagcatccaa 134 ||||||||||||||| |||||||| Sbjct: 104419 cgcaaggtgctcaagggcatccaa 104442
>gb|AC122189.4| Mus musculus BAC clone RP23-36C8 from 1, complete sequence Length = 247309 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cagagtctgagaagaaggag 479 |||||||||||||||||||| Sbjct: 219288 cagagtctgagaagaaggag 219269
>gb|AC122812.4| Mus musculus BAC clone RP23-285M9 from 1, complete sequence Length = 208430 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cagagtctgagaagaaggag 479 |||||||||||||||||||| Sbjct: 76385 cagagtctgagaagaaggag 76366
>gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete sequence Length = 122694 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 70 tgagggtttccatccactgccatggctg 97 ||||||||||||| || ||||||||||| Sbjct: 48815 tgagggtttccatgcattgccatggctg 48842
>gb|AC144721.18| Medicago truncatula clone mth2-11o23, complete sequence Length = 135959 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 gagaagaaggaggctgagaa 487 |||||||||||||||||||| Sbjct: 99797 gagaagaaggaggctgagaa 99778
>gb|AC092406.3| Papio anubis clone RP41-326L21, complete sequence Length = 192030 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 aggaggctgagaaagaggag 494 |||||||||||||||||||| Sbjct: 52339 aggaggctgagaaagaggag 52358
>emb|AJ867402.1| Saccharum officinarum mRNA for glycosyltransferase (a4 gene) Length = 1580 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 aggacgatgctgctgcggcggcgg 348 ||||||| |||||||||||||||| Sbjct: 265 aggacgacgctgctgcggcggcgg 288
>gb|AE011968.1| Xanthomonas axonopodis pv. citri str. 306, section 346 of 469 of the complete genome Length = 11332 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 cgcaaggtgctcaagagcatccaa 134 ||||||||||||||| |||||||| Sbjct: 7017 cgcaaggtgctcaagggcatccaa 6994
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 ctgccatggctgcaagaagaagat 109 ||||||||| |||||||||||||| Sbjct: 45674 ctgccatgggtgcaagaagaagat 45697
>ref|XM_623150.1| PREDICTED: Apis mellifera similar to dopamine 2-like receptor DD2R-606 (LOC550758), mRNA Length = 3238 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 468 gagaagaaggaggctgagaaagaggagg 495 ||||||||||||| |||| ||||||||| Sbjct: 1238 gagaagaaggaggatgaggaagaggagg 1211
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gcaagaagaagatccgcaag 116 |||||||||||||||||||| Sbjct: 58055 gcaagaagaagatccgcaag 58036
>gb|AE008925.1| Xanthomonas axonopodis pv. citri str. 306 plasmid pXAC64, complete sequence Length = 64920 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 cgcaaggtgctcaagagcatccaa 134 ||||||||||||||| |||||||| Sbjct: 9295 cgcaaggtgctcaagggcatccaa 9272
>emb|AL805980.28| Mouse DNA sequence from clone RP23-49C8 on chromosome X, complete sequence Length = 172618 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 agaaggaggctgagaaagag 491 |||||||||||||||||||| Sbjct: 130463 agaaggaggctgagaaagag 130444
>gb|AC090644.2| Homo sapiens chromosome 3 clone RP11-322M13 map 3p, complete sequence Length = 201414 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 468 gagaagaaggaggctgagaaagaggagg 495 ||||||||||||| ||||||||||||| Sbjct: 31099 gagaagaaggaggaggagaaagaggagg 31072
>gb|AC167564.1| Mus musculus BAC clone RP24-224G11 from chromosome 14, complete sequence Length = 204945 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 agaaggaggctgagaaagaggagg 495 ||||||||| |||||||||||||| Sbjct: 190155 agaaggaggatgagaaagaggagg 190178
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 98 caagaagaagatccgcaaggtgctcaag 125 |||||||||| ||| ||||||||||||| Sbjct: 942243 caagaagaaggtcctcaaggtgctcaag 942270
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gcaagaagaagatccgcaag 116 |||||||||||||||||||| Sbjct: 57354 gcaagaagaagatccgcaag 57335
>emb|AL929153.11| Mouse DNA sequence from clone RP23-55C8 on chromosome 2, complete sequence Length = 116887 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tcccttcccctggcgtctgg 43 |||||||||||||||||||| Sbjct: 100842 tcccttcccctggcgtctgg 100823
>dbj|AK067933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128A09, full insert sequence Length = 1243 Score = 40.1 bits (20), Expect = 6.9 Identities = 50/60 (83%) Strand = Plus / Plus Query: 81 atccactgccatggctgcaagaagaagatccgcaaggtgctcaagagcatccaaggcgtg 140 ||||||||| | || |||||||||||| || ||||||||| ||| |||| |||||||| Sbjct: 170 atccactgcgagggttgcaagaagaaggtcaagaaggtgctccagaacatcgaaggcgtg 229
>gb|AC154020.3| Mus musculus 6 BAC RP24-365C10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172981 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 ctgagaagaaggaggctgag 485 |||||||||||||||||||| Sbjct: 75993 ctgagaagaaggaggctgag 76012
>emb|AL157689.3|CNS01RG1 Human chromosome 14 DNA sequence BAC R-1075M22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 216457 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 agaagccggagcaggaggag 422 |||||||||||||||||||| Sbjct: 141676 agaagccggagcaggaggag 141695
>gb|AC129975.21| Mus musculus chromosome 14, clone RP23-447I12, complete sequence Length = 168905 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 agaaggaggctgagaaagaggagg 495 ||||||||| |||||||||||||| Sbjct: 78898 agaaggaggatgagaaagaggagg 78921
>emb|AL683884.26| Mouse DNA sequence from clone RP23-117B19 on chromosome 4, complete sequence Length = 227816 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 acaagaagccggagcaggag 419 |||||||||||||||||||| Sbjct: 223511 acaagaagccggagcaggag 223492
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 98 caagaagaagatccgcaaggtgctcaag 125 |||||||||| ||| ||||||||||||| Sbjct: 625377 caagaagaaggtcctcaaggtgctcaag 625404
>emb|AL807830.10| Mouse DNA sequence from clone RP23-303I9 on chromosome 4, complete sequence Length = 79426 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 agtgatggtgacgggcaccg 192 |||||||||||||||||||| Sbjct: 7556 agtgatggtgacgggcaccg 7575
>gb|L38514.1|TRBRANGB Trypanosoma rangeli (clone 3) rangelipain gene, 3' end of cds and 5' end of cds Length = 1898 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cgagcccgccgcgcctgcca 276 |||||||||||||||||||| Sbjct: 913 cgagcccgccgcgcctgcca 932
>gb|L38513.1|TRBRANGA Trypanosoma rangeli (clone 2) rangelipain gene, 3' end of cds and 5' end of cds Length = 1905 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cgagcccgccgcgcctgcca 276 |||||||||||||||||||| Sbjct: 926 cgagcccgccgcgcctgcca 945
>gb|L38512.1|TRBRANG Trypanosoma rangeli (clone 1) rangelipain gene, 3' end of cds and 5' end of cds Length = 1902 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cgagcccgccgcgcctgcca 276 |||||||||||||||||||| Sbjct: 923 cgagcccgccgcgcctgcca 942
>gb|AC104805.3| Homo sapiens BAC clone RP11-571N1 from 4, complete sequence Length = 164347 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 468 gagaagaaggaggctgagaaagaggagg 495 ||||||||||||| ||||||||||||| Sbjct: 47083 gagaagaaggaggaggagaaagaggagg 47056 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,697,065 Number of Sequences: 3902068 Number of extensions: 4697065 Number of successful extensions: 99970 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99466 Number of HSP's gapped (non-prelim): 504 length of query: 514 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 491 effective length of database: 17,143,297,704 effective search space: 8417359172664 effective search space used: 8417359172664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
