>PRAF1_CANFA (Q8HY39) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
          Length = 185

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +3

Query: 261 ESARRSLSDRRPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNY 398
           E   R  +  RPW+  VD+  FSRP +L +   RL RN+ Y++ NY
Sbjct: 33  ERLERRRATIRPWSSFVDQRRFSRPRNLGELCQRLVRNVEYYQSNY 78

>PRAF1_HUMAN (Q9UI14) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
          Length = 185

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +3

Query: 291 RPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNY 398
           RPW+  VD+  FSRP +L +   RL RN+ Y++ NY
Sbjct: 43  RPWSTFVDQQRFSRPRNLGELCQRLVRNVEYYQSNY 78

>PRAF1_RAT (O35394) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
          Length = 185

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 291 RPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNY 398
           RPW   VD+  FSRP ++ +   RL RN+ Y++ NY
Sbjct: 43  RPWGTFVDQQRFSRPRNVGELCQRLVRNVEYYQSNY 78

>PRAF1_MOUSE (Q9Z0S9) Prenylated Rab acceptor protein 1 (PRA1 family protein 1)|
           (Prenylin)
          Length = 185

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 291 RPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNY 398
           RPW   VD+  FSRP ++ +   RL RN+ Y++ NY
Sbjct: 43  RPWGTFVDQQRFSRPRNVGELCQRLVRNVEYYQSNY 78

>PRA1_SCHPO (Q9UUN5) PRA1-like protein|
          Length = 171

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 249 SRITESARRSLSDRRPWAEMVDRSAFSRPDSLSDATSRLRRNLTYFRVNY 398
           S I  S  + LS  +   E +D    SRP + S+A SR+  N + F  NY
Sbjct: 16  SEIYASRAQYLSGFKSVGEFLDVRRISRPRNFSEAQSRISFNFSRFSSNY 65

>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 26/99 (26%), Positives = 29/99 (29%), Gaps = 3/99 (3%)
 Frame = +2

Query: 8    ITRAEGRRLPPLVQQTKPSRLLESTPRSAPDSAPHGFRADTAAPPPGHQPHXXXXXXXXX 187
            + RA G   PP V    P       P  A    P G    + AP P  QP          
Sbjct: 1260 VKRAHGT--PPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGT 1317

Query: 188  XXXXXXXXXADRHAGVPPLH---EPDHRVGAALAVRPAP 295
                          G P LH   +P     AA A   AP
Sbjct: 1318 PPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAP 1356

>BRO1_CRYNE (Q5KE13) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 957

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 59  PSRLLESTPRSAPDSAPHGFRADTAAPPPGHQP 157
           PSR   ++P  AP   P        APPPGH P
Sbjct: 888 PSRPTYASPPFAPQQPPMQSGHSPYAPPPGHAP 920

>BI3_HUMAN (O95415) Brain protein I3 (pRGR2)|
          Length = 125

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 38  PLVQQTKPSRLLESTPRSAPDSAPHGFRADTAAPPPGHQPH 160
           PL+Q+  P+  LE+         PHG+ A  AAPPP   P+
Sbjct: 5   PLLQERPPAYNLEAGQGDYA-CGPHGYGAIPAAPPPPPYPY 44


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,419,137
Number of Sequences: 219361
Number of extensions: 609538
Number of successful extensions: 2702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2696
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)