ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart42c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPO... 35 0.069
2DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular car... 32 0.58
3DACT1_MOUSE (Q8R4A3) Dapper homolog 1 (MDpr1) (Frodo) (Thymus-ex... 28 4.9
4GCH11_PSEPK (Q88LV4) GTP cyclohydrolase I 1 (EC 3.5.4.16) (GTP-C... 28 8.4
5STK23_MOUSE (Q9Z0G2) Serine/threonine-protein kinase 23 (EC 2.7.... 28 8.4

>AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPONSE)|
          Length = 372

 Score = 34.7 bits (78), Expect = 0.069
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 98  LIPGMPDDVAVDCLARVPHGSYRSMRRVCRGWRSAAAAPEF 220
           LI G+P+D+A  CL R+P+  +   R V   W      P F
Sbjct: 28  LISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRF 68



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>DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular carcinoma novel|
           gene 3 protein)
          Length = 836

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 159 DPCGTRARQSTATSSGIPGMRSTWSASHPWT--RLFGFIIA 43
           D CG     +  T S +P   S WSASHP +  ++ G+I++
Sbjct: 304 DICGGSELDAVKTDSSLPSPSSLWSASHPSSSKKMDGYILS 344



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>DACT1_MOUSE (Q8R4A3) Dapper homolog 1 (MDpr1) (Frodo) (Thymus-expressed novel|
           gene 3 protein)
          Length = 778

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 159 DPCGTRARQSTATSSGIPGMRSTWSASHPWT--RLFGFIIA 43
           D C      +T T + +P   S WSASHP +  ++ G+I++
Sbjct: 260 DICIGSELNATKTDNSLPSPSSLWSASHPASSKKMDGYILS 300



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>GCH11_PSEPK (Q88LV4) GTP cyclohydrolase I 1 (EC 3.5.4.16) (GTP-CH-I 1)|
          Length = 190

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +2

Query: 56  PKSRVQGWEADHVDLIPGMPDDVAVDCLARVPHGSYRSMRRVCRGW 193
           P  R    E ++ +++  + +DV+ + L   P  + ++M+ +CRG+
Sbjct: 5   PTGRSMSLEQNYTEILSQIGEDVSREGLLDTPKRAAKAMKYLCRGY 50



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>STK23_MOUSE (Q9Z0G2) Serine/threonine-protein kinase 23 (EC 2.7.11.1)|
           (Muscle-specific serine kinase 1) (MSSK-1)
          Length = 565

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 156 PCGTRARQSTATSSGIPGMRSTWSASHPWTRLFGFIIAGEKCEL 25
           P GTRA  S A+SS +PG   + S S   +   G + +   C +
Sbjct: 320 PEGTRAGPSPASSSPVPGGERSLSPSSQTSGFSGSLFSTASCSI 363


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.307    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,338,892
Number of Sequences: 219361
Number of extensions: 382436
Number of successful extensions: 1235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
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