>UBQL2_HUMAN (Q9UHD9) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)|
           (PLIC-2) (hPLIC-2) (Ubiquitin-like product Chap1/Dsk2)
           (DSK2 homolog) (Chap1)
          Length = 624

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 576 PNPMAPSPATKSTPSGPTTSLTAGASGRLQSTAS 475
           PNP AP PAT+S+ +  TT+ T   SG   S A+
Sbjct: 317 PNPWAPPPATQSSATTSTTTSTGSGSGNSSSNAT 350

>ENGC_STRAW (Q82LC4) Probable GTPase engC (EC 3.6.1.-)|
          Length = 370

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 341 YGWDPDAEVRVWPLDAEGALVGAVQRYE 424
           YGWD D E    P D+EG L G V R +
Sbjct: 20  YGWDADWEAEFAPYDSEGLLAGRVIRVD 47

>MSB2_YEAST (P32334) Protein MSB2 (Multicopy suppressor of bud emergence 2)|
          Length = 1306

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 24/91 (26%), Positives = 40/91 (43%)
 Frame = -2

Query: 567 MAPSPATKSTPSGPTTSLTAGASGRLQSTASSEXXXXXXXXXXXXXRNS*RCXXXXXXXX 388
           +  S A  S+PS PTT+  + ++  LQ T+ S               +            
Sbjct: 244 LVQSSADFSSPSSPTTTDISLSAAPLQ-TSESSSFTTASAALPVSSTDVDGSSASPVVSM 302

Query: 387 XXSGQTRTSASGSHPYLSATASMTSSKKVGS 295
             +GQ  +S+S  +P +S T S+TS++  GS
Sbjct: 303 SAAGQIASSSSTDNPTMSETFSLTSTEVDGS 333

>UBQL2_MOUSE (Q9QZM0) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)|
           (PLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2
           homolog) (Chap1)
          Length = 638

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 576 PNPMAPSPATKSTPSGPTTSLTAGASGRLQSTASS 472
           PNP AP P T++  +  TT+ T+  SG   S++S+
Sbjct: 328 PNPWAPPPTTQTAATTTTTTTTSSGSGSGSSSSST 362

>PODXL_RABIT (Q28645) Podocalyxin-like protein 1 precursor|
          Length = 551

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 576 PNPMAPSPATKSTPSGPTTSLTAGASGRLQSTASSE 469
           P P +PSP+    PSGP+ + T   +GR  +++S+E
Sbjct: 259 PFPSSPSPSPALQPSGPSAAGTEDTTGRGPTSSSTE 294

>CPO_DROME (Q01617) Protein couch potato|
          Length = 738

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 570 PMAPSPATKSTPSGPTTSLTAGASGRLQSTASS 472
           P  PSPA   T + PT + TA A+G   +TA++
Sbjct: 361 PTTPSPAGSVTSAAPTATATAAAAGSAAATAAA 393

>MUC5A_HUMAN (P98088) Mucin-5AC (Mucin 5 subtype AC, tracheobronchial)|
           (Tracheobronchial mucin) (TBM) (Major airway
           glycoprotein) (Fragment)
          Length = 1233

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 28/98 (28%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
 Frame = -2

Query: 561 PSPA-TKSTPSGPTTSLTAGASGRLQSTASSEXXXXXXXXXXXXXRNS*RCXXXXXXXXX 385
           PSP  T ST S PTTS T+G       T  S                S            
Sbjct: 36  PSPVPTTSTTSAPTTSTTSG-----PGTTPSPVPTTSTTSAPTTSTTSASTASTTSGPGT 90

Query: 384 XSGQTRTSASGSHPYLSATASMTSSKKVGSGAGTCSRP 271
                 T+++ S P  S T++ T+S    SG GT   P
Sbjct: 91  TPSPVPTTSTTSAPTTSTTSASTAS--TTSGPGTSLSP 126

>ZN553_HUMAN (Q96MX3) Zinc finger protein 553|
          Length = 618

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 576 PNPMAPSPATKSTPSGPTTSLTAGASGR 493
           P PMAP P  ++ PSGP+     G  G+
Sbjct: 523 PVPMAPRPRVRAQPSGPSQPHVCGFCGK 550


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,900,220
Number of Sequences: 219361
Number of extensions: 659437
Number of successful extensions: 3928
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3908
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)