ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart42c04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469891.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1278 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 317 gtcatcgacgccgtcgccgacaagtacggatgggaccccgacgccgaggtccgggtctgg 376 |||||||| ||||| | || ||||||| |||||||||||||| ||||||||||||||| Sbjct: 181 gtcatcgatgccgtgtcggagaagtacgactgggaccccgacgcggaggtccgggtctgg 240 Query: 377 ccgctcgacgccgagggcgcgctcgtcggcgccgtgcagcgctacgagttccgcgcccgc 436 |||||||||||||| | ||| | |||||||||||||||||||||||||||||||| || Sbjct: 241 ccgctcgacgccgacgccgcccgggtcggcgccgtgcagcgctacgagttccgcgcacgg 300 Query: 437 gcggg 441 ||||| Sbjct: 301 gcggg 305 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Plus Query: 516 aggaggtggtcgggcccgacggggtcgacttcgtcgccggcgacggcgc 564 ||||||||| |||||||||||| ||||| ||||| ||||||| ||||| Sbjct: 377 aggaggtggatgggcccgacgggctcgacgtcgtccccggcgatggcgc 425
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 317 gtcatcgacgccgtcgccgacaagtacggatgggaccccgacgccgaggtccgggtctgg 376 |||||||| ||||| | || ||||||| |||||||||||||| ||||||||||||||| Sbjct: 31375371 gtcatcgatgccgtgtcggagaagtacgactgggaccccgacgcggaggtccgggtctgg 31375430 Query: 377 ccgctcgacgccgagggcgcgctcgtcggcgccgtgcagcgctacgagttccgcgcccgc 436 |||||||||||||| | ||| | |||||||||||||||||||||||||||||||| || Sbjct: 31375431 ccgctcgacgccgacgccgcccgggtcggcgccgtgcagcgctacgagttccgcgcacgg 31375490 Query: 437 gcggg 441 ||||| Sbjct: 31375491 gcggg 31375495 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Plus Query: 516 aggaggtggtcgggcccgacggggtcgacttcgtcgccggcgacggcgc 564 ||||||||| |||||||||||| ||||| ||||| ||||||| ||||| Sbjct: 31375567 aggaggtggatgggcccgacgggctcgacgtcgtccccggcgatggcgc 31375615
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Minus Query: 317 gtcatcgacgccgtcgccgacaagtacggatgggaccccgacgccgaggtccgggtctgg 376 |||||||| ||||| | || ||||||| |||||||||||||| ||||||||||||||| Sbjct: 120429 gtcatcgatgccgtgtcggagaagtacgactgggaccccgacgcggaggtccgggtctgg 120370 Query: 377 ccgctcgacgccgagggcgcgctcgtcggcgccgtgcagcgctacgagttccgcgcccgc 436 |||||||||||||| | ||| | |||||||||||||||||||||||||||||||| || Sbjct: 120369 ccgctcgacgccgacgccgcccgggtcggcgccgtgcagcgctacgagttccgcgcacgg 120310 Query: 437 gcggg 441 ||||| Sbjct: 120309 gcggg 120305 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 516 aggaggtggtcgggcccgacggggtcgacttcgtcgccggcgacggcgc 564 ||||||||| |||||||||||| ||||| ||||| ||||||| ||||| Sbjct: 120233 aggaggtggatgggcccgacgggctcgacgtcgtccccggcgatggcgc 120185
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 317 gtcatcgacgccgtcgccgacaagtacggatgggaccccgacgccgaggtccgggtctgg 376 |||||||| ||||| | || ||||||| |||||||||||||| ||||||||||||||| Sbjct: 31465887 gtcatcgatgccgtgtcggagaagtacgactgggaccccgacgcggaggtccgggtctgg 31465946 Query: 377 ccgctcgacgccgagggcgcgctcgtcggcgccgtgcagcgctacgagttccgcgcccgc 436 |||||||||||||| | ||| | |||||||||||||||||||||||||||||||| || Sbjct: 31465947 ccgctcgacgccgacgccgcccgggtcggcgccgtgcagcgctacgagttccgcgcacgg 31466006 Query: 437 gcggg 441 ||||| Sbjct: 31466007 gcggg 31466011 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Plus Query: 516 aggaggtggtcgggcccgacggggtcgacttcgtcgccggcgacggcgc 564 ||||||||| |||||||||||| ||||| ||||| ||||||| ||||| Sbjct: 31466083 aggaggtggatgggcccgacgggctcgacgtcgtccccggcgatggcgc 31466131
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 48.1 bits (24), Expect = 0.032 Identities = 27/28 (96%) Strand = Plus / Minus Query: 310 cgacgacgtcatcgacgccgtcgccgac 337 |||||||| ||||||||||||||||||| Sbjct: 438589 cgacgacgacatcgacgccgtcgccgac 438562
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 48.1 bits (24), Expect = 0.032 Identities = 27/28 (96%) Strand = Plus / Plus Query: 362 gaggtccgggtctggccgctcgacgccg 389 |||||||||||||||||| ||||||||| Sbjct: 5219006 gaggtccgggtctggccggtcgacgccg 5219033
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 381 tcgacgccgagggcgcgctcgtcggcg 407 ||||| ||||||||||||||||||||| Sbjct: 703560 tcgaccccgagggcgcgctcgtcggcg 703586
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 308 ttcgacgacgtcatcgacgccgt 330 ||||||||||||||||||||||| Sbjct: 916122 ttcgacgacgtcatcgacgccgt 916144 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 310 cgacgacgtcatcgacgccgtcgccgac 337 |||||| | ||||||||||||||||||| Sbjct: 3099927 cgacgaggacatcgacgccgtcgccgac 3099900
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 472 cgacgaggccgtcgactggagc 493 |||||||||||||||||||||| Sbjct: 856338 cgacgaggccgtcgactggagc 856317
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 472 cgacgaggccgtcgactggagc 493 |||||||||||||||||||||| Sbjct: 1872944 cgacgaggccgtcgactggagc 1872923 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 378 cgctcgacgccgagggcgcgctcgtcggc 406 |||||| ||||||||||||| |||||||| Sbjct: 785378 cgctcgccgccgagggcgcgatcgtcggc 785406 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gcgcgctcgtcggcgccgtg 412 |||||||||||||||||||| Sbjct: 38609 gcgcgctcgtcggcgccgtg 38628
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 380 ctcgacgccgagggcgcgctcg 401 |||||||||||||||||||||| Sbjct: 2737541 ctcgacgccgagggcgcgctcg 2737562
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 309 tcgacgacgtcatcgacgccgtcgcc 334 ||||||||||||||||||||| |||| Sbjct: 1395537 tcgacgacgtcatcgacgccggcgcc 1395562
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 472 cgacgaggccgtcgactggagc 493 |||||||||||||||||||||| Sbjct: 2491979 cgacgaggccgtcgactggagc 2492000 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gcgcgctcgtcggcgccgtg 412 |||||||||||||||||||| Sbjct: 3868847 gcgcgctcgtcggcgccgtg 3868866
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 380 ctcgacgccgagggcgcgctcg 401 |||||||||||||||||||||| Sbjct: 1701869 ctcgacgccgagggcgcgctcg 1701890
>gb|AF372987.1| Zea mays legumin-like protein (cl2-1) mRNA, complete cds Length = 1357 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 519 aggtggtcgggcccgacggggt 540 |||||||||||||||||||||| Sbjct: 835 aggtggtcgggcccgacggggt 856
>ref|XM_599490.2| PREDICTED: Bos taurus similar to ankyrin repeat and SOCS box-containing 18 (LOC521230), mRNA Length = 2052 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 388 cgagggcgcgctcgtcggcgccgtgcagc 416 |||| |||||| ||||||||||||||||| Sbjct: 1618 cgagcgcgcgcgcgtcggcgccgtgcagc 1590
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 301 caccttcttcgacgacgtcat 321 ||||||||||||||||||||| Sbjct: 784086 caccttcttcgacgacgtcat 784066 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 cgtcgccggcgacggcgcca 566 |||||||||||||||||||| Sbjct: 2316088 cgtcgccggcgacggcgcca 2316069 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 gggcgcgctcgtcggcgccg 410 |||||||||||||||||||| Sbjct: 2102340 gggcgcgctcgtcggcgccg 2102359 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 cgcgctcgtcggcgccgtgc 413 |||||||||||||||||||| Sbjct: 1231206 cgcgctcgtcggcgccgtgc 1231225
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 544 cttcgtcgccggcgacggcgc 564 ||||||||||||||||||||| Sbjct: 4234769 cttcgtcgccggcgacggcgc 4234789 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 309 tcgacgacgtcatcgacgccgtcgccga 336 ||||||||||||||||| || ||||||| Sbjct: 4867643 tcgacgacgtcatcgactccatcgccga 4867670
>gb|AE004690.1| Pseudomonas aeruginosa PAO1, section 251 of 529 of the complete genome Length = 10325 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 cgacgtcatcgacgccgtcgc 333 ||||||||||||||||||||| Sbjct: 37 cgacgtcatcgacgccgtcgc 57
>gb|AE004689.1| Pseudomonas aeruginosa PAO1, section 250 of 529 of the complete genome Length = 10732 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 cgacgtcatcgacgccgtcgc 333 ||||||||||||||||||||| Sbjct: 10709 cgacgtcatcgacgccgtcgc 10729
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 307 cttcgacgacgtcatcgacgccgtcgccgacaa 339 ||||||||||||| |||||||| ||| |||||| Sbjct: 452056 cttcgacgacgtcctcgacgccttcgtcgacaa 452088 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 550 cgccggcgacggcgccatcg 569 |||||||||||||||||||| Sbjct: 583543 cgccggcgacggcgccatcg 583562
>dbj|BS000014.1| Pan troglodytes chromosome 22 clone:PTB-065D08, map 22, complete sequences Length = 44243 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 gccgccccgacgcccccgcgg 512 ||||||||||||||||||||| Sbjct: 10902 gccgccccgacgcccccgcgg 10922
>gb|AF127577.2|AF127577 Homo sapiens clone PAC 270M7 chromosome 21 map 21q11.2, complete sequence Length = 168153 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 gccgccccgacgcccccgcgg 512 ||||||||||||||||||||| Sbjct: 147289 gccgccccgacgcccccgcgg 147309
>emb|AJ332934.1|HSA332934 Homo sapiens genomic sequence surrounding NotI site, clone NR5-KH12R Length = 711 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 492 gccgccccgacgcccccgcgg 512 ||||||||||||||||||||| Sbjct: 90 gccgccccgacgcccccgcgg 70
>emb|AL163208.2|HS21C008 Homo sapiens chromosome 21 segment HS21C008 Length = 340000 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 gccgccccgacgcccccgcgg 512 ||||||||||||||||||||| Sbjct: 67225 gccgccccgacgcccccgcgg 67245
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 550 cgccggcgacggcgccatcgg 570 ||||||||||||||||||||| Sbjct: 3040732 cgccggcgacggcgccatcgg 3040752
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 549 tcgccggcgacggcgccatcg 569 ||||||||||||||||||||| Sbjct: 2207935 tcgccggcgacggcgccatcg 2207915 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 cgacgccgagggcgcgctcg 401 |||||||||||||||||||| Sbjct: 998617 cgacgccgagggcgcgctcg 998636
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ccgctcgacgccgagggcgc 396 |||||||||||||||||||| Sbjct: 332273 ccgctcgacgccgagggcgc 332292
>ref|XM_468100.1| Oryza sativa (japonica cultivar-group), mRNA Length = 309 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 cgcgctcgtcggcgccgtgc 413 |||||||||||||||||||| Sbjct: 270 cgcgctcgtcggcgccgtgc 289
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 cgtcggcgccgtgcagcgct 419 |||||||||||||||||||| Sbjct: 480156 cgtcggcgccgtgcagcgct 480175
>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0059K16, complete sequence Length = 139615 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gacgccgagggcgcgctcgtcggc 406 ||||||||||||||||||| |||| Sbjct: 101103 gacgccgagggcgcgctcggcggc 101126
>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22, complete sequence Length = 166052 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gacgccgagggcgcgctcgtcggc 406 ||||||||||||||||||| |||| Sbjct: 20263 gacgccgagggcgcgctcggcggc 20286
>gb|BT017992.1| Zea mays clone EL01N0526C06.c mRNA sequence Length = 985 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 aggtggtcgggcccgacggg 538 |||||||||||||||||||| Sbjct: 405 aggtggtcgggcccgacggg 424
>ref|XM_362212.1| Magnaporthe grisea 70-15 hypothetical protein (MG04657.4) partial cds Length = 1659 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 535 cggggtcgacttcgtcgccg 554 |||||||||||||||||||| Sbjct: 283 cggggtcgacttcgtcgccg 264
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 ccgagggcgcgctcgtcggc 406 |||||||||||||||||||| Sbjct: 3110369 ccgagggcgcgctcgtcggc 3110388
>gb|AC134256.4| Oryza sativa (japonica cultivar-group), complete sequence Length = 178233 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 540 tcgacttcgtcgccggcgacggcg 563 ||||||||| |||||||||||||| Sbjct: 79737 tcgacttcgccgccggcgacggcg 79760
>ref|XM_798494.1| Trypanosoma brucei TREU927 hypothetical protein (Tb09.160.1460) partial mRNA Length = 264 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tccccgccttcttcccccct 33 |||||||||||||||||||| Sbjct: 154 tccccgccttcttcccccct 173
>ref|XM_747301.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g10280) partial mRNA Length = 1155 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 306 tcttcgacgacgtcatcgacgccg 329 |||||||||| ||||||||||||| Sbjct: 977 tcttcgacgatgtcatcgacgccg 1000
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cttcgacgacgtcatcgacg 326 |||||||||||||||||||| Sbjct: 1469399 cttcgacgacgtcatcgacg 1469380
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 tcgccggcgacggcgccatc 568 |||||||||||||||||||| Sbjct: 2863456 tcgccggcgacggcgccatc 2863475
>ref|XM_780717.1| PREDICTED: Strongylocentrotus purpuratus similar to CG17927-PA, isoform A (LOC580674), mRNA Length = 6028 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 cgacgtcatcgacgccgtcg 332 |||||||||||||||||||| Sbjct: 1091 cgacgtcatcgacgccgtcg 1072
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 ccgacggggtcgacttcgtc 550 |||||||||||||||||||| Sbjct: 1610373 ccgacggggtcgacttcgtc 1610392
>emb|X56004.1|TAGSTAGST Wheat gstA2 gene for glutathione-S-transferase Length = 3196 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gtcgacttcgtcgccggcga 558 |||||||||||||||||||| Sbjct: 2147 gtcgacttcgtcgccggcga 2166
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 acgccgagggcgcgctcgtcggcg 407 |||||||||||||||||| ||||| Sbjct: 43425 acgccgagggcgcgctcggcggcg 43402
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 cgccgagggcgcgctcgtcggcgc 408 |||||||| ||||||||||||||| Sbjct: 101860 cgccgaggccgcgctcgtcggcgc 101837
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 cgcgggccgcgagcaggtcc 287 |||||||||||||||||||| Sbjct: 104499 cgcgggccgcgagcaggtcc 104518
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 cgtcatcgacgccgtcgccgacaa 339 |||||| ||||||||||||||||| Sbjct: 4025738 cgtcattgacgccgtcgccgacaa 4025715
>dbj|AB180845.1| Streptomyces sp. TM-7 boxA, boxB gene for cytochrome P450 type compactin 6beta-hydroxylase, ferredoxin, complete cds Length = 1992 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 cgacgtcatcgacgccgtcg 332 |||||||||||||||||||| Sbjct: 1302 cgacgtcatcgacgccgtcg 1283
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 cgacgacgtcatcgacgccg 329 |||||||||||||||||||| Sbjct: 125525 cgacgacgtcatcgacgccg 125544
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 540 tcgacttcgtcgccggcgacggcg 563 ||||||||| |||||||||||||| Sbjct: 18665357 tcgacttcgccgccggcgacggcg 18665380
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 cgtcgccggcgacggcgcca 566 |||||||||||||||||||| Sbjct: 7179857 cgtcgccggcgacggcgcca 7179876
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 546 tcgtcgccggcgacggcgcc 565 |||||||||||||||||||| Sbjct: 5789824 tcgtcgccggcgacggcgcc 5789843
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gacgccgagggcgcgctcgtcggc 406 ||||||||||||||||||| |||| Sbjct: 14684809 gacgccgagggcgcgctcggcggc 14684832
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 cgcgctcgtcggcgccgtgc 413 |||||||||||||||||||| Sbjct: 33053062 cgcgctcgtcggcgccgtgc 33053081
>gb|AF372988.1| Zea mays legumin-like protein (cl2-2) mRNA, complete cds Length = 1401 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 aggtggtcgggcccgacggg 538 |||||||||||||||||||| Sbjct: 859 aggtggtcgggcccgacggg 878
>ref|XM_580202.1| PREDICTED: Rattus norvegicus LOC501497 (LOC501497), mRNA Length = 934 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 accccaatccgtcccttctc 116 |||||||||||||||||||| Sbjct: 379 accccaatccgtcccttctc 360
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 cgacgccgagggcgcgctcg 401 |||||||||||||||||||| Sbjct: 4374576 cgacgccgagggcgcgctcg 4374595 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ccgacgccgaggtccgggtc 373 |||||||||||||||||||| Sbjct: 2730753 ccgacgccgaggtccgggtc 2730734 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 369 gggtctggccgctcgacgccgagg 392 ||||| |||||||||||||||||| Sbjct: 1021414 gggtccggccgctcgacgccgagg 1021391
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_A01 Length = 139121 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 cgcgctcgtcggcgccgtgc 413 |||||||||||||||||||| Sbjct: 99002 cgcgctcgtcggcgccgtgc 99021
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 ggtcgacttcgtcgccggcg 557 |||||||||||||||||||| Sbjct: 3786196 ggtcgacttcgtcgccggcg 3786177
>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0701E03 Length = 183245 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 546 tcgtcgccggcgacggcgcc 565 |||||||||||||||||||| Sbjct: 105353 tcgtcgccggcgacggcgcc 105372
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1381_H04 Length = 130961 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 cgtcgccggcgacggcgcca 566 |||||||||||||||||||| Sbjct: 31962 cgtcgccggcgacggcgcca 31981
>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0592C05 Length = 150478 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 cgtcgccggcgacggcgcca 566 |||||||||||||||||||| Sbjct: 131936 cgtcgccggcgacggcgcca 131955
>gb|AE005136.1| Halobacterium sp. NRC-1 section 167 of 170 of the complete genome Length = 10393 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 267 tcgcgggccgcgagcaggtccccg 290 ||||||||||||||||| |||||| Sbjct: 1922 tcgcgggccgcgagcagatccccg 1945
>gb|AE005017.1| Halobacterium sp. NRC-1 section 48 of 170 of the complete genome Length = 12046 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 cgacgccgagggcgcgctcg 401 |||||||||||||||||||| Sbjct: 4065 cgacgccgagggcgcgctcg 4084
>dbj|AK110217.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-162-D07, full insert sequence Length = 3103 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 agggcgcgctcgtcggcgcc 409 |||||||||||||||||||| Sbjct: 760 agggcgcgctcgtcggcgcc 779
>dbj|AK107955.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C03, full insert sequence Length = 815 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 cgtcgccggcgacggcgcca 566 |||||||||||||||||||| Sbjct: 154 cgtcgccggcgacggcgcca 135
>dbj|AK105999.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H10, full insert sequence Length = 1819 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 540 tcgacttcgtcgccggcgacggcg 563 ||||||||| |||||||||||||| Sbjct: 209 tcgacttcgccgccggcgacggcg 232
>dbj|AK105736.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-H12, full insert sequence Length = 1810 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 540 tcgacttcgtcgccggcgacggcg 563 ||||||||| |||||||||||||| Sbjct: 200 tcgacttcgccgccggcgacggcg 223
>gb|AY107295.1| Zea mays PCO117817 mRNA sequence Length = 1107 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 aggtggtcgggcccgacggg 538 |||||||||||||||||||| Sbjct: 558 aggtggtcgggcccgacggg 577
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 513 tcaaggaggtggtcgggcccgacg 536 ||||||||| |||||||||||||| Sbjct: 4315737 tcaaggaggaggtcgggcccgacg 4315760
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 tcatcgacgccgtcgccgac 337 |||||||||||||||||||| Sbjct: 769636 tcatcgacgccgtcgccgac 769655
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 ctcgtcggcgccgtgcagcg 417 |||||||||||||||||||| Sbjct: 242826 ctcgtcggcgccgtgcagcg 242845
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 540 tcgacttcgtcgccggcgacggcg 563 ||||||||| |||||||||||||| Sbjct: 18824758 tcgacttcgccgccggcgacggcg 18824781 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,494,895 Number of Sequences: 3902068 Number of extensions: 2494895 Number of successful extensions: 74649 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68597 Number of HSP's gapped (non-prelim): 6052 length of query: 577 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 554 effective length of database: 17,143,297,704 effective search space: 9497386928016 effective search space used: 9497386928016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
