ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart42c01 |
|---|---|
| Clone Library Name | barley_pub |
>IF5_MAIZE (P55876) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 451 Score = 102 bits (253), Expect = 9e-22 Identities = 48/51 (94%), Positives = 51/51 (100%) Frame = +3 Query: 387 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARP 539 MALQNIGASN+DDAFYRYKMPRM+TKIEGRGNGIKTN+VNMVDIAKALARP Sbjct: 1 MALQNIGASNRDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARP 51
>IF5Y_ARATH (Q9C8F1) Probable eukaryotic translation initiation factor 5-1| (eIF-5 1) Length = 439 Score = 99.0 bits (245), Expect = 8e-21 Identities = 46/51 (90%), Positives = 50/51 (98%) Frame = +3 Query: 387 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARP 539 MALQNIGASN+DDAFYRYKMPRM+TKIEGRGNGIKTN+VNMV+IAKAL RP Sbjct: 1 MALQNIGASNRDDAFYRYKMPRMMTKIEGRGNGIKTNVVNMVEIAKALGRP 51
>IF5_PHAVU (P48724) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 443 Score = 97.4 bits (241), Expect = 2e-20 Identities = 46/51 (90%), Positives = 48/51 (94%) Frame = +3 Query: 387 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARP 539 MALQNIGA N DDAFYRYKMPRM+TKIEGRGNGIKTN+VNMVDIAK LARP Sbjct: 1 MALQNIGAGNSDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVDIAKRLARP 51
>IF5Z_ARATH (Q9S825) Probable eukaryotic translation initiation factor 5-2| (eIF-5 2) Length = 437 Score = 91.3 bits (225), Expect = 2e-18 Identities = 42/51 (82%), Positives = 49/51 (96%) Frame = +3 Query: 387 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARP 539 MALQNIGASN++DAFYRYKMP+M+TK EG+GNGIKTNI+N V+IAKALARP Sbjct: 1 MALQNIGASNRNDAFYRYKMPKMVTKTEGKGNGIKTNIINNVEIAKALARP 51
>IF5_HUMAN (P55010) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 431 Score = 68.2 bits (165), Expect = 1e-11 Identities = 30/39 (76%), Positives = 35/39 (89%) Frame = +3 Query: 423 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARP 539 D FYRYKMPR++ K+EG+GNGIKT IVNMVD+AKAL RP Sbjct: 11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRP 49
>IF5_RAT (Q07205) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 429 Score = 68.2 bits (165), Expect = 1e-11 Identities = 30/39 (76%), Positives = 35/39 (89%) Frame = +3 Query: 423 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARP 539 D FYRYKMPR++ K+EG+GNGIKT IVNMVD+AKAL RP Sbjct: 11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRP 49
>IF5_MOUSE (P59325) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 429 Score = 68.2 bits (165), Expect = 1e-11 Identities = 30/39 (76%), Positives = 35/39 (89%) Frame = +3 Query: 423 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARP 539 D FYRYKMPR++ K+EG+GNGIKT IVNMVD+AKAL RP Sbjct: 11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRP 49
>IF5_SCHPO (Q09689) Probable eukaryotic translation initiation factor 5| (eIF-5) Length = 395 Score = 63.2 bits (152), Expect = 5e-10 Identities = 33/51 (64%), Positives = 39/51 (76%) Frame = +3 Query: 387 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARP 539 MA NI KD +FYRY+MP++ +KIEG+GNGIKT I NM DIAKAL RP Sbjct: 1 MATINIRRDVKD-SFYRYRMPKLQSKIEGKGNGIKTVIPNMSDIAKALGRP 50
>IF5_DROME (Q9VXK6) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 464 Score = 62.8 bits (151), Expect = 6e-10 Identities = 29/51 (56%), Positives = 38/51 (74%) Frame = +3 Query: 387 MALQNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARP 539 MA N+ S D FYRYKMPR+ K+EG+GNGIKT +VNM ++A+A+ RP Sbjct: 1 MATVNVNRS-VTDIFYRYKMPRLQAKVEGKGNGIKTVLVNMAEVARAIGRP 50
>IF5_CAEEL (Q22918) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 436 Score = 60.1 bits (144), Expect = 4e-09 Identities = 27/39 (69%), Positives = 32/39 (82%) Frame = +3 Query: 423 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARP 539 D FYRYKMP++ K+EG+GNGIKT I NM +IAKAL RP Sbjct: 11 DPFYRYKMPKLSAKVEGKGNGIKTVISNMSEIAKALERP 49
>IF5_YEAST (P38431) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 405 Score = 57.4 bits (137), Expect = 3e-08 Identities = 25/39 (64%), Positives = 31/39 (79%) Frame = +3 Query: 423 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARP 539 D FYRYKMP + K+EGRGNGIKT ++N+ DI+ AL RP Sbjct: 11 DPFYRYKMPPIQAKVEGRGNGIKTAVLNVADISHALNRP 49
>RBSA_HAEIN (P44735) Ribose transport ATP-binding protein rbsA (EC 3.6.3.17)| Length = 493 Score = 30.0 bits (66), Expect = 4.3 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = -3 Query: 533 GKCFCYVNHVHNIGLDAITTSFNFGQHSGHLVPVEGIILVGSTNV 399 G+C V HV G+D + +F H+G +V V G++ G T + Sbjct: 254 GECVLDVKHVSGSGIDDV----SFKLHAGEIVGVSGLMGAGRTEL 294
>NU1M_TOLMA (Q70Y23) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 29.6 bits (65), Expect = 5.6 Identities = 31/112 (27%), Positives = 50/112 (44%) Frame = -1 Query: 535 LASAFAMSTMFTILVLMPLPRPSILVSILGILYL*KASSLLEAPMFCSAILRKSFCRRCR 356 LA A S ++ + MP+P P I ++ LG+L++ SSL + S S Sbjct: 73 LAPMLAFSLALSMWIPMPMPHPLIHLN-LGVLFILALSSLAVYSILWSGWASNS------ 125 Query: 355 QMWQISEAIIAAGRWL*AQAVSSELSEPENLMGS*CMQGSTNLCLFLVAREY 200 A+I A R + AQ +S E++ L+ + M GS L +E+ Sbjct: 126 -----KYALIGALRAV-AQTISYEVTLAIILLSTMMMNGSFTLSTLTTTQEH 171
>MOAB_STAES (Q8CMK6) Molybdenum cofactor biosynthesis protein B| Length = 176 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/59 (27%), Positives = 31/59 (52%) Frame = -3 Query: 533 GKCFCYVNHVHNIGLDAITTSFNFGQHSGHLVPVEGIILVGSTNVLQRHLEKILLPQMS 357 G+ F Y+++ ++G A+ T G L+ L GST ++ +EK++ P++S Sbjct: 110 GELFRYLSYTEDVGTRALLTRAIAGTCDSTLI----FALPGSTGAIKLAIEKLIKPELS 164
>MOAB_STAEQ (Q5HLX4) Molybdenum cofactor biosynthesis protein B| Length = 176 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/59 (27%), Positives = 31/59 (52%) Frame = -3 Query: 533 GKCFCYVNHVHNIGLDAITTSFNFGQHSGHLVPVEGIILVGSTNVLQRHLEKILLPQMS 357 G+ F Y+++ ++G A+ T G L+ L GST ++ +EK++ P++S Sbjct: 110 GELFRYLSYTEDVGTRALLTRAIAGTCDSTLI----FALPGSTGAIKLAIEKLIKPELS 164
>NU1M_TAMSI (O78698) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 29.3 bits (64), Expect = 7.4 Identities = 14/40 (35%), Positives = 28/40 (70%) Frame = -1 Query: 535 LASAFAMSTMFTILVLMPLPRPSILVSILGILYL*KASSL 416 +A + A++ FT+ + +P+P+P I ++ +GIL++ SSL Sbjct: 73 IAPSLALTLAFTMWIPLPMPQPLINMN-MGILFILATSSL 111
>Y023_MYCTU (P67704) Putative HTH-type transcriptional regulator Rv0023/MT0026| Length = 256 Score = 29.3 bits (64), Expect = 7.4 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Frame = +3 Query: 99 SVLLQSDKVEGYAEPSFMSEQASVYLG--SVGLLGEYSRATRKRHKFVLPCMHQEPIRFS 272 SV+ Q K E A S+ + +V G S G L E+ RA +L M P S Sbjct: 140 SVIAQCVKAEMLAASSW---RVAVNAGADSTGRLMEHLRALEATRGALLERM---PTSLS 193 Query: 273 GSESSLDTACAQSHLPAAIIASEI 344 + D ACAQS LP A++A+ I Sbjct: 194 ---ARFDRACAQSSLPEAVVAALI 214
>Y023_MYCBO (P67705) Putative HTH-type transcriptional regulator Mb0023| Length = 256 Score = 29.3 bits (64), Expect = 7.4 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Frame = +3 Query: 99 SVLLQSDKVEGYAEPSFMSEQASVYLG--SVGLLGEYSRATRKRHKFVLPCMHQEPIRFS 272 SV+ Q K E A S+ + +V G S G L E+ RA +L M P S Sbjct: 140 SVIAQCVKAEMLAASSW---RVAVNAGADSTGRLMEHLRALEATRGALLERM---PTSLS 193 Query: 273 GSESSLDTACAQSHLPAAIIASEI 344 + D ACAQS LP A++A+ I Sbjct: 194 ---ARFDRACAQSSLPEAVVAALI 214
>LEU3_SYMTH (Q67JY2) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 368 Score = 29.3 bits (64), Expect = 7.4 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = +3 Query: 147 FMSEQASVYLGSVGLLGEYSRATRKRHKFVLPCMHQEPIRFSGSE 281 F+S++A++ GS+GLL S R++F LP EPI S + Sbjct: 253 FLSDEAAMLTGSIGLLPSASLGA-ARNRFGLPKGFYEPIHGSAPD 296
>IMB4_SCHPO (O60100) Probable importin beta-4 subunit (Karyopherin beta-4| subunit) (Importin 123) Length = 1067 Score = 28.9 bits (63), Expect = 9.6 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%) Frame = -3 Query: 458 QHSGHLVPVEGIILVGSTNVLQRHLEKILL-------PQMSSDVANF 339 QH G L+PV +L GS L L LL PQ S V+N+ Sbjct: 1013 QHLGELIPVFASVLTGSPEQLNDELRSELLSMVKEIAPQYESVVSNY 1059 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,939,054 Number of Sequences: 219361 Number of extensions: 1523879 Number of successful extensions: 3775 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3683 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3774 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
