>MTNK_BACAN (Q81MJ5) Methylthioribose kinase (EC 2.7.1.100) (MTR kinase)|
          Length = 393

 Score =  102 bits (255), Expect = 6e-22
 Identities = 49/115 (42%), Positives = 76/115 (66%)
 Frame = +3

Query: 189 EVGDGNLNFVYIVTSDAGSVVVKQALPYIRCVGDSWPMTRERAYFEASALREHGRLCPDH 368
           E+GDGNLN+V+ +     S+++KQALPY + VG+SWP++ +RA  E+ AL+   +  P++
Sbjct: 31  EIGDGNLNYVFKLDDGEKSIIIKQALPYAKVVGESWPLSIKRATIESKALQIFAKYVPEY 90

Query: 369 VPEVYHFDRAMSLIGMRYIKPPHIILRKGLIAGVHYPLLAHHMADYMANTLFFTS 533
           VP VY  D  +++  +  +     I RKGLI G  YPLL+ H+  ++AN LF+TS
Sbjct: 91  VPVVYSHDEELAVTVIEDLS-RLTITRKGLIDGEEYPLLSQHIGRFLANVLFYTS 144

>MTNK_BACCR (Q819F1) Methylthioribose kinase (EC 2.7.1.100) (MTR kinase)|
          Length = 393

 Score =  102 bits (254), Expect = 7e-22
 Identities = 49/115 (42%), Positives = 76/115 (66%)
 Frame = +3

Query: 189 EVGDGNLNFVYIVTSDAGSVVVKQALPYIRCVGDSWPMTRERAYFEASALREHGRLCPDH 368
           E+GDGNLN+V+ +     S+++KQALPY + VG+SWP++ +RA  E+ AL+   +  PD+
Sbjct: 31  EIGDGNLNYVFKLDDGEKSIIIKQALPYAKVVGESWPLSIKRATIESKALQIFAQYVPDY 90

Query: 369 VPEVYHFDRAMSLIGMRYIKPPHIILRKGLIAGVHYPLLAHHMADYMANTLFFTS 533
           VP VY  D  +++  +  +     I RKGLI G  YPLL+ H+  ++A+ LF+TS
Sbjct: 91  VPVVYSHDEELAITVIEDLS-RLTITRKGLIDGEEYPLLSQHIGRFLAHVLFYTS 144

>MTNK_BACSU (O31663) Methylthioribose kinase (EC 2.7.1.100) (MTR kinase)|
          Length = 397

 Score =  100 bits (249), Expect = 3e-21
 Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 3/151 (1%)
 Frame = +3

Query: 90  FRPLDEASLVAYIRATPALAASLGGRVDALSVKEVGDGNLNFVYIVTSDAG--SVVVKQA 263
           +  L+E+S VA      A+   L      L+ +E+GDGNLN+V+ +       ++++KQA
Sbjct: 9   YETLNESSAVAL-----AVKLGLFPSKSTLTCQEIGDGNLNYVFHIYDQEHDRALIIKQA 63

Query: 264 LPYIRCVGDSWPMTRERAYFEASALREHGRLCPDHVPEVYHFDRAMSLIGMRYIKPPHI- 440
           +PY + VG+SWP+T +RA  E+SAL   G   P  VP V++ D  M++  M  +   H+ 
Sbjct: 64  VPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDTEMAVTVMEDLS--HLK 121

Query: 441 ILRKGLIAGVHYPLLAHHMADYMANTLFFTS 533
           I RKGLI G +YP L+ H+ +++  TLF++S
Sbjct: 122 IARKGLIEGENYPHLSQHIGEFLGKTLFYSS 152

>FPRA_RHOCA (P18607) Type A flavoprotein fprA (EC 1.-.-.-) (FMN-protein fprA)|
           (Flavoprotein A)
          Length = 435

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
 Frame = +3

Query: 294 WPMTR------ERAYFEASALREH---GRLCPDHVPEV-----YHFDRAMSLIGMRYIKP 431
           WP T+      ER  F       H   GRL  D V +      Y+FDR M        + 
Sbjct: 168 WPDTQCTWLAAERVLFTCDLFGSHYCDGRLFNDLVGDFRFSFEYYFDRIMRPFRSFVAQA 227

Query: 432 PHII--LRKGLIAGVHYPLLAHHMADYMANT 518
             +I  L  G+IA  H P+L  H  DY+ +T
Sbjct: 228 LDLIEPLDFGIIAPAHGPILRSHPRDYLTHT 258

>SVIL_MOUSE (Q8K4L3) Supervillin (Archvillin) (p205/p250)|
          Length = 2170

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = -1

Query: 256 LTTTEP----ASDVTM*TKLRLPSPTSLTERASTRPPRLAASAGVARM*ATREASSSGRN 89
           +  TEP     S VT     RLPSPT    R+S +P RL ASA    +   R+ ++ GR 
Sbjct: 705 IAATEPIPASCSGVTHPVTARLPSPT--VARSSVQPARLQASAHQKAL--ARDQANEGRE 760

Query: 88  SS 83
           S+
Sbjct: 761 SA 762

>B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 374 RDVVR--AEAAVLPQRRRLEVGPLPRHRPRVPHAP 276
           R +VR  A+ +    R   E GP PR RPR PH P
Sbjct: 282 RHLVRKNAKGSAQSSREGREPGPTPRSRPRAPHKP 316

>B3A2_MOUSE (P13808) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 374 RDVVR--AEAAVLPQRRRLEVGPLPRHRPRVPHAP 276
           R +VR  A+ +    R   E GP PR RPR PH P
Sbjct: 282 RHLVRKNAKGSTQAAREGREPGPTPRARPRAPHKP 316

>B3A2_RAT (P23347) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1234

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 374 RDVVR--AEAAVLPQRRRLEVGPLPRHRPRVPHAP 276
           R +VR  A+ +    R   E GP PR RPR PH P
Sbjct: 283 RHLVRKNAKGSTQAAREGREPGPTPRARPRAPHKP 317

>B3A2_CAVPO (Q9Z0S8) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2)
          Length = 1238

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 374 RDVVRAEAAVLPQRRR--LEVGPLPRHRPRVPHAP 276
           R +VR  A    Q  R   E GP PR RPR PH P
Sbjct: 282 RHLVRKNAKGSSQSSREGREPGPTPRTRPRAPHKP 316

>SYE_PROAC (Q6A6M1) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 497

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -3

Query: 461 DEALA--EDDVGRLDVAHPDERHGAVEVVDLRDVVRAEAAVLPQRRRL--EVGPLPR 303
           D+AL   ED V +L     D +H AVEV+   D   A+A     R RL  E+G  PR
Sbjct: 396 DDALVFDEDSVAKLKAGADDIQHAAVEVLKGLDDFSADAIQAALRARLCDEMGIKPR 452

>EGR1_BRARE (P26632) Early growth response protein 1 (EGR-1) (Krox24)|
          Length = 511

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 295 HESPTHRMYGSACLTTTEPASDVTM*TKLRLPSPTSLTERASTRP 161
           + SP H  Y S  + TT P++  T  T++    PTS+     + P
Sbjct: 447 YSSPVHTSYPSPSIATTYPSATSTFQTQVATSFPTSVASNIYSSP 491

>B3A2_HUMAN (P04920) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (BND3L)
          Length = 1241

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 374 RDVVRAEAAVLPQ--RRRLEVGPLPRHRPRVPHAP 276
           R +VR  A    Q  R   E GP PR RPR PH P
Sbjct: 286 RHLVRKNAKGSTQSGREGREPGPTPRARPRAPHKP 320

>SYT_LEIXX (Q6AFC3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 695

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
 Frame = +3

Query: 126 IRATPALAASLGGRVDALSVKEVGDGNLNFVYIVTSDAGSVVVKQA-----LPYIRCVGD 290
           ++ + A +A +GG        EVG G L     V    G  + K       LP  R +G+
Sbjct: 175 LKGSDAESAEVGGEESV----EVGSGELTIYDNVDPKTGETIWKDLCRGPHLPNTRMIGN 230

Query: 291 SWPMTRERAYF 323
            W +TR  A +
Sbjct: 231 GWALTRVAAAY 241

>RPOB_THEAC (Q03587) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)|
          Length = 1195

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 297 PMTRERAYFEASALR--EHGRLCPDHVPE 377
           P+TR + +FEA  L   + GR+CP+  PE
Sbjct: 478 PLTRTQPHFEARDLHPTQWGRICPNETPE 506

>TOLB_MANSM (Q65UN0) Protein tolB precursor|
          Length = 431

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
 Frame = +3

Query: 30  PFPTRSSVPAQLAAMAAGD-----EFRPLDEASL----VAYIRATPALAASLGGRVDALS 182
           PF T  SVPA +A +   D     +F P+  + +     +    TP   A+LG  VDA+ 
Sbjct: 46  PFKTNGSVPADIAEIVTADLRNSGKFNPIPVSQMPQQPASASEVTPDAWAALG--VDAIV 103

Query: 183 VKEV---GDG-NLNFVYIVT----SDAGSVVVKQALPYIRCVGDSW 296
           V +V   G+G N+ +  + T      AG+V+ + ++     VG  W
Sbjct: 104 VGQVTATGNGYNIAYQLVDTVGASGGAGAVLAQNSV----TVGAKW 145

>ATG26_CRYNE (Q5KK25) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
            (Autophagy-related protein 26)
          Length = 1585

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 264  LPYIRCVGDSWPMTRERAYFEASALREHGRLCPDHVPEVYHFDR 395
            +PY R    + P TR RAY  A A+ EHGR  P +      FD+
Sbjct: 1154 IPYYRAF--TMPWTRTRAYPHAFAVPEHGRGGPYNYMTYTMFDQ 1195

>DP87_DICDI (Q04503) Prespore protein DP87 precursor|
          Length = 555

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -1

Query: 202 PSPTSLTERASTRPPRLAASAGV---ARM*ATREASSSGRNSSPAAMAASWAGTDE 44
           PS ++ +  AS+ P   AAS+     A   A   ASSS  +SS ++ AAS A + E
Sbjct: 491 PSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAASSAASSE 546


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.129    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,199,386
Number of Sequences: 219361
Number of extensions: 821131
Number of successful extensions: 2401
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2394
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)