ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart42b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip ... 68 8e-12
2CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chiti... 65 7e-11

>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb|
           chitinase-1) (TBC-1)
          Length = 314

 Score = 67.8 bits (164), Expect = 8e-12
 Identities = 32/55 (58%), Positives = 40/55 (72%)
 Frame = +3

Query: 6   PMTNGNLFREYIGGRVTGVRFSDVPVNTGVSFHYILAFAIDYTPVAQKPTPTPTN 170
           P+T+  +FREYIG +   V+FSDVP+N  V FH+ILAFAIDYT      +PTPTN
Sbjct: 22  PLTSALVFREYIGSQFNDVKFSDVPINPDVDFHFILAFAIDYT---SGSSPTPTN 73



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>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)|
          Length = 275

 Score = 64.7 bits (156), Expect = 7e-11
 Identities = 31/49 (63%), Positives = 36/49 (73%)
 Frame = +3

Query: 24  LFREYIGGRVTGVRFSDVPVNTGVSFHYILAFAIDYTPVAQKPTPTPTN 170
           LFREYIG +   V+FSDVP+N  V FH+ILAFAIDYT      +PTPTN
Sbjct: 2   LFREYIGAQFNDVKFSDVPINPNVDFHFILAFAIDYT---SGSSPTPTN 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,005,667
Number of Sequences: 219361
Number of extensions: 248002
Number of successful extensions: 880
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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