ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart42b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
2dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
3dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
4dbj|AK101596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 7e-22
5ref|NM_197195.1| Oryza sativa (japonica cultivar-group) unknown ... 46 0.13
6gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 gen... 46 0.13
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.13
9emb|AJ251743.1|TFE251743 Thiobacillus ferrooxidans transposon Tn... 44 0.52
10gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
11gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
12ref|XM_959350.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.1
13ref|XM_330390.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.1
14emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 42 2.1
15dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 2.1
17gb|U24657.1|MXU24657 Myxococcus xanthus saframycin Mx1 synthetas... 42 2.1
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
19emb|CT009609.1| Desulfococcus multivorans vrl island 42 2.1
20gb|AY642281.1| Stenotrophomonas maltophilia strain VUN 10,010 Gy... 42 2.1
21gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 8.1
22ref|XM_474370.1| Oryza sativa (japonica cultivar-group), predic... 40 8.1
23ref|XM_465010.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.1
24gb|CP000354.1| Ralstonia metallidurans CH34 plasmid pMOL30, comp... 40 8.1
25gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 8.1
26gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 8.1
27emb|AJ877225.1| Pseudomonas aeruginosa plasmid Rms149 40 8.1
28emb|Y17719.1|PSP17719 Pseudomonas sp. DNA for Tn21-subgroup tran... 40 8.1
29emb|X71400.2|AECZCOP5R Ralstonia metallidurans CH34 plasmid pMOL30 40 8.1
30emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4,... 40 8.1
31gb|AC022515.5| Homo sapiens chromosome 19 clone CTB-59C6, comple... 40 8.1
32gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.1
33gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequ... 40 8.1
34gb|AC104170.2| Homo sapiens chromosome 1 clone RP11-253A20, comp... 40 8.1
35gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 8.1
36dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
37dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
39gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 8.1
40dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
41gb|AF181662.1|AF181662 Zoogloea ramigera putative morphology pro... 40 8.1
42dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
43dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
44dbj|AK109942.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.1
45emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 8.1
46gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete seq... 40 8.1
47gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 8.1
48gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 8.1
49gb|AF000634.1|AF000634 Lytechinus variegatus notch homolog mRNA,... 40 8.1 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  113 bits (57), Expect = 7e-22
 Identities = 117/137 (85%)
 Strand = Plus / Plus

                                                                            
Query: 96       atggctgcgagcattctgtcccacgttgtctccgacctctgcatcggcaagccggcggtg 155
                ||||| |||||| ||||||||||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 25665210 atggcggcgagccttctgtcccacgtcgtgtccgatctctgcatcggcaagccgccggcg 25665269

                                                                            
Query: 156      cgtgtgcttccgtcgtcgactcccatcgcggcggccctcgccacgctccgcgccggtgcc 215
                || ||||| ||| |||| |||||| ||||||| ||||||||| |||||||| |||| |  
Sbjct: 25665270 cgcgtgctgccgccgtccactcccgtcgcggccgccctcgccgcgctccgcaccggagat 25665329

                                 
Query: 216      gacccattcatcttcgt 232
                ||||| ||| |||||||
Sbjct: 25665330 gaccccttcgtcttcgt 25665346



 Score =  109 bits (55), Expect = 1e-20
 Identities = 109/127 (85%)
 Strand = Plus / Plus

                                                                            
Query: 253      gaagaagacggccgcgttgtccgtcgtcgtcaaggtcagtgtcgcggagatcctgtgcta 312
                ||||||||  ||||||  || ||||||||||||||| || ||||||||  | || |||||
Sbjct: 25665383 gaagaagatcgccgcggggtgcgtcgtcgtcaaggttagcgtcgcggacgtgctctgcta 25665442

                                                                            
Query: 313      cgtctgcggcgacactgccaacctcggcgaccccgcggccgcgctccgccggcccgtgtc 372
                ||| ||||||||| | | ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 25665443 cgtgtgcggcgacgcggacaacctcagcgaccccgcggccgcgctcggccggcccgtgtc 25665502

                       
Query: 373      cgtgctc 379
                || ||||
Sbjct: 25665503 cgcgctc 25665509



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                           
Query: 544      ctactgcgtgctgacgcagcaagacatcgtccggcacctcttc 586
                ||||||||||||||||| | ||||||||||||| |||||||||
Sbjct: 25665843 ctactgcgtgctgacgcgggaagacatcgtccgccacctcttc 25665885



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                            
Query: 435      tgctcgacgccatcgacgtgctgctggccaacaactcgcacagcctggtcgtcccgctcc 494
                ||||||||||||| |||| |||||||  |||| || | || | |||| ||||||||||||
Sbjct: 25665701 tgctcgacgccattgacgcgctgctgagcaacgacgctcagaccctgctcgtcccgctcc 25665760

                    
Query: 495      acgc 498
                ||||
Sbjct: 25665761 acgc 25665764



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 275      gtcgtcgtcaaggtcagtgtcgcg 298
                |||||||||||||||| |||||||
Sbjct: 10898259 gtcgtcgtcaaggtcattgtcgcg 10898236
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>dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0014E22
          Length = 157627

 Score =  113 bits (57), Expect = 7e-22
 Identities = 117/137 (85%)
 Strand = Plus / Plus

                                                                          
Query: 96     atggctgcgagcattctgtcccacgttgtctccgacctctgcatcggcaagccggcggtg 155
              ||||| |||||| ||||||||||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 135257 atggcggcgagccttctgtcccacgtcgtgtccgatctctgcatcggcaagccgccggcg 135316

                                                                          
Query: 156    cgtgtgcttccgtcgtcgactcccatcgcggcggccctcgccacgctccgcgccggtgcc 215
              || ||||| ||| |||| |||||| ||||||| ||||||||| |||||||| |||| |  
Sbjct: 135317 cgcgtgctgccgccgtccactcccgtcgcggccgccctcgccgcgctccgcaccggagat 135376

                               
Query: 216    gacccattcatcttcgt 232
              ||||| ||| |||||||
Sbjct: 135377 gaccccttcgtcttcgt 135393



 Score =  109 bits (55), Expect = 1e-20
 Identities = 109/127 (85%)
 Strand = Plus / Plus

                                                                          
Query: 253    gaagaagacggccgcgttgtccgtcgtcgtcaaggtcagtgtcgcggagatcctgtgcta 312
              ||||||||  ||||||  || ||||||||||||||| || ||||||||  | || |||||
Sbjct: 135430 gaagaagatcgccgcggggtgcgtcgtcgtcaaggttagcgtcgcggacgtgctctgcta 135489

                                                                          
Query: 313    cgtctgcggcgacactgccaacctcggcgaccccgcggccgcgctccgccggcccgtgtc 372
              ||| ||||||||| | | ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 135490 cgtgtgcggcgacgcggacaacctcagcgaccccgcggccgcgctcggccggcccgtgtc 135549

                     
Query: 373    cgtgctc 379
              || ||||
Sbjct: 135550 cgcgctc 135556



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                         
Query: 544    ctactgcgtgctgacgcagcaagacatcgtccggcacctcttc 586
              ||||||||||||||||| | ||||||||||||| |||||||||
Sbjct: 135890 ctactgcgtgctgacgcgggaagacatcgtccgccacctcttc 135932



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                          
Query: 435    tgctcgacgccatcgacgtgctgctggccaacaactcgcacagcctggtcgtcccgctcc 494
              ||||||||||||| |||| |||||||  |||| || | || | |||| ||||||||||||
Sbjct: 135748 tgctcgacgccattgacgcgctgctgagcaacgacgctcagaccctgctcgtcccgctcc 135807

                  
Query: 495    acgc 498
              ||||
Sbjct: 135808 acgc 135811
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>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0010C01
          Length = 186185

 Score =  113 bits (57), Expect = 7e-22
 Identities = 117/137 (85%)
 Strand = Plus / Plus

                                                                         
Query: 96    atggctgcgagcattctgtcccacgttgtctccgacctctgcatcggcaagccggcggtg 155
             ||||| |||||| ||||||||||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 67886 atggcggcgagccttctgtcccacgtcgtgtccgatctctgcatcggcaagccgccggcg 67945

                                                                         
Query: 156   cgtgtgcttccgtcgtcgactcccatcgcggcggccctcgccacgctccgcgccggtgcc 215
             || ||||| ||| |||| |||||| ||||||| ||||||||| |||||||| |||| |  
Sbjct: 67946 cgcgtgctgccgccgtccactcccgtcgcggccgccctcgccgcgctccgcaccggagat 68005

                              
Query: 216   gacccattcatcttcgt 232
             ||||| ||| |||||||
Sbjct: 68006 gaccccttcgtcttcgt 68022



 Score =  109 bits (55), Expect = 1e-20
 Identities = 109/127 (85%)
 Strand = Plus / Plus

                                                                         
Query: 253   gaagaagacggccgcgttgtccgtcgtcgtcaaggtcagtgtcgcggagatcctgtgcta 312
             ||||||||  ||||||  || ||||||||||||||| || ||||||||  | || |||||
Sbjct: 68059 gaagaagatcgccgcggggtgcgtcgtcgtcaaggttagcgtcgcggacgtgctctgcta 68118

                                                                         
Query: 313   cgtctgcggcgacactgccaacctcggcgaccccgcggccgcgctccgccggcccgtgtc 372
             ||| ||||||||| | | ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 68119 cgtgtgcggcgacgcggacaacctcagcgaccccgcggccgcgctcggccggcccgtgtc 68178

                    
Query: 373   cgtgctc 379
             || ||||
Sbjct: 68179 cgcgctc 68185



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                        
Query: 544   ctactgcgtgctgacgcagcaagacatcgtccggcacctcttc 586
             ||||||||||||||||| | ||||||||||||| |||||||||
Sbjct: 68519 ctactgcgtgctgacgcgggaagacatcgtccgccacctcttc 68561



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                         
Query: 435   tgctcgacgccatcgacgtgctgctggccaacaactcgcacagcctggtcgtcccgctcc 494
             ||||||||||||| |||| |||||||  |||| || | || | |||| ||||||||||||
Sbjct: 68377 tgctcgacgccattgacgcgctgctgagcaacgacgctcagaccctgctcgtcccgctcc 68436

                 
Query: 495   acgc 498
             ||||
Sbjct: 68437 acgc 68440
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>dbj|AK101596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051G14, full
           insert sequence
          Length = 1626

 Score =  113 bits (57), Expect = 7e-22
 Identities = 117/137 (85%)
 Strand = Plus / Plus

                                                                       
Query: 96  atggctgcgagcattctgtcccacgttgtctccgacctctgcatcggcaagccggcggtg 155
           ||||| |||||| ||||||||||||| || ||||| |||||||||||||||||| ||| |
Sbjct: 92  atggcggcgagccttctgtcccacgtcgtgtccgatctctgcatcggcaagccgccggcg 151

                                                                       
Query: 156 cgtgtgcttccgtcgtcgactcccatcgcggcggccctcgccacgctccgcgccggtgcc 215
           || ||||| ||| |||| |||||| ||||||| ||||||||| |||||||| |||| |  
Sbjct: 152 cgcgtgctgccgccgtccactcccgtcgcggccgccctcgccgcgctccgcaccggagat 211

                            
Query: 216 gacccattcatcttcgt 232
           ||||| ||| |||||||
Sbjct: 212 gaccccttcgtcttcgt 228



 Score =  109 bits (55), Expect = 1e-20
 Identities = 109/127 (85%)
 Strand = Plus / Plus

                                                                       
Query: 253 gaagaagacggccgcgttgtccgtcgtcgtcaaggtcagtgtcgcggagatcctgtgcta 312
           ||||||||  ||||||  || ||||||||||||||| || ||||||||  | || |||||
Sbjct: 265 gaagaagatcgccgcggggtgcgtcgtcgtcaaggttagcgtcgcggacgtgctctgcta 324

                                                                       
Query: 313 cgtctgcggcgacactgccaacctcggcgaccccgcggccgcgctccgccggcccgtgtc 372
           ||| ||||||||| | | ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 325 cgtgtgcggcgacgcggacaacctcagcgaccccgcggccgcgctcggccggcccgtgtc 384

                  
Query: 373 cgtgctc 379
           || ||||
Sbjct: 385 cgcgctc 391



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                      
Query: 544 ctactgcgtgctgacgcagcaagacatcgtccggcacctcttc 586
           ||||||||||||||||| | ||||||||||||| |||||||||
Sbjct: 725 ctactgcgtgctgacgcgggaagacatcgtccgccacctcttc 767



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 435 tgctcgacgccatcgacgtgctgctggccaacaactcgcacagcctggtcgtcccgctcc 494
           ||||||||||||| |||| |||||||  |||| || | || | |||| ||||||||||||
Sbjct: 583 tgctcgacgccattgacgcgctgctgagcaacgacgctcagaccctgctcgtcccgctcc 642

               
Query: 495 acgc 498
           ||||
Sbjct: 643 acgc 646
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>ref|NM_197195.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0078O01.5), mRNA
          Length = 1381

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 129 gacctctgcatcggcaagccggcggtg 155
           ||||| |||||||||||||||||||||
Sbjct: 34  gacctgtgcatcggcaagccggcggtg 60
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>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete
             sequence
          Length = 146664

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 129   gacctctgcatcggcaagccggcggtg 155
             ||||| |||||||||||||||||||||
Sbjct: 40902 gacctgtgcatcggcaagccggcggtg 40928
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 129      gacctctgcatcggcaagccggcggtg 155
                ||||| |||||||||||||||||||||
Sbjct: 18537891 gacctgtgcatcggcaagccggcggtg 18537917
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 129      gacctctgcatcggcaagccggcggtg 155
                ||||| |||||||||||||||||||||
Sbjct: 18547944 gacctgtgcatcggcaagccggcggtg 18547970
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>emb|AJ251743.1|TFE251743 Thiobacillus ferrooxidans transposon Tn5037, strain G66
          Length = 7771

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 435  tgctcgacgccatcgacgtgct 456
            ||||||||||||||||||||||
Sbjct: 5755 tgctcgacgccatcgacgtgct 5776
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>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0032K12, complete sequence
          Length = 166936

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 363   ggcccgtgtccgtgctcaccg 383
             |||||||||||||||||||||
Sbjct: 11273 ggcccgtgtccgtgctcaccg 11253
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>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
           OSJNBb0007H22, complete sequence
          Length = 160938

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 363 ggcccgtgtccgtgctcaccg 383
           |||||||||||||||||||||
Sbjct: 836 ggcccgtgtccgtgctcaccg 856
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>ref|XM_959350.1| Neurospora crassa OR74A hypothetical protein (NCU09741.1) partial
            mRNA
          Length = 2079

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 310  ctacgtctgcggcgacactgccaac 334
            |||||||||||||||| ||||||||
Sbjct: 1923 ctacgtctgcggcgacgctgccaac 1947
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>ref|XM_330390.1| Neurospora crassa OR74A hypothetical protein (NCU09741.1) partial
            mRNA
          Length = 2079

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 310  ctacgtctgcggcgacactgccaac 334
            |||||||||||||||| ||||||||
Sbjct: 1923 ctacgtctgcggcgacgctgccaac 1947
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 439    cgacgccatcgacgtgctgctggcc 463
              |||||||||||||||||||| ||||
Sbjct: 113393 cgacgccatcgacgtgctgcaggcc 113417
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 363     ggcccgtgtccgtgctcaccg 383
               |||||||||||||||||||||
Sbjct: 6886015 ggcccgtgtccgtgctcaccg 6885995
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 346     cgcggccgcgctccgccggcc 366
               |||||||||||||||||||||
Sbjct: 4285985 cgcggccgcgctccgccggcc 4286005



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 437     ctcgacgccatcgacgtgct 456
               ||||||||||||||||||||
Sbjct: 1327707 ctcgacgccatcgacgtgct 1327726
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>gb|U24657.1|MXU24657 Myxococcus xanthus saframycin Mx1 synthetase B (safB), saframycin Mx1
             synthetase A (safA), and safC genes, complete cds
          Length = 14100

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 444   ccatcgacgtgctgctggcca 464
             |||||||||||||||||||||
Sbjct: 12557 ccatcgacgtgctgctggcca 12577
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 363     ggcccgtgtccgtgctcaccg 383
               |||||||||||||||||||||
Sbjct: 6952482 ggcccgtgtccgtgctcaccg 6952462
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>emb|CT009609.1| Desulfococcus multivorans vrl island
          Length = 89210

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 177  cccatcgcggcggccctcgcc 197
            |||||||||||||||||||||
Sbjct: 9985 cccatcgcggcggccctcgcc 9965
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>gb|AY642281.1| Stenotrophomonas maltophilia strain VUN 10,010 GyrB-like (gyrB)
           gene, partial sequence
          Length = 1169

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 179 catcgcggcggccctcgccacgctc 203
           ||||||||||||| |||||||||||
Sbjct: 332 catcgcggcggccatcgccacgctc 308
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    cgccatcgacgtgctgctgg 461
              ||||||||||||||||||||
Sbjct: 756098 cgccatcgacgtgctgctgg 756079
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>ref|XM_474370.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1197

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 132 ctctgcatcggcaagccggcggtg 155
           |||||||||||||||||| |||||
Sbjct: 31  ctctgcatcggcaagccgccggtg 54
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>ref|XM_465010.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 927

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 275 gtcgtcgtcaaggtcagtgtcgcg 298
           |||||||||||||||| |||||||
Sbjct: 711 gtcgtcgtcaaggtcattgtcgcg 734
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>gb|CP000354.1| Ralstonia metallidurans CH34 plasmid pMOL30, complete sequence
          Length = 233720

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 435    tgctcgacgccatcgacgtgctgc 458
              |||||||||||||||| |||||||
Sbjct: 228972 tgctcgacgccatcgaggtgctgc 228995
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 435     tgctcgacgccatcgacgtgctgc 458
               |||||||||||||||| |||||||
Sbjct: 1072358 tgctcgacgccatcgaggtgctgc 1072335



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 435    tgctcgacgccatcgacgtgctgc 458
              |||||||||||||||| |||||||
Sbjct: 926327 tgctcgacgccatcgaggtgctgc 926350
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 435     tgctcgacgccatcgacgtgctgc 458
               ||||||| ||||||||||||||||
Sbjct: 3256814 tgctcgatgccatcgacgtgctgc 3256791
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>emb|AJ877225.1| Pseudomonas aeruginosa plasmid Rms149
          Length = 57121

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 435   tgctcgacgccatcgacgtgctgc 458
             |||||||||||||||| |||||||
Sbjct: 37074 tgctcgacgccatcgaggtgctgc 37051
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>emb|Y17719.1|PSP17719 Pseudomonas sp. DNA for Tn21-subgroup transposon Tn5051, partial
          Length = 2297

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 435  tgctcgacgccatcgacgtgctgc 458
            |||||||||||||||| |||||||
Sbjct: 2152 tgctcgacgccatcgaggtgctgc 2175
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>emb|X71400.2|AECZCOP5R Ralstonia metallidurans CH34 plasmid pMOL30
          Length = 233755

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 435    tgctcgacgccatcgacgtgctgc 458
              |||||||||||||||| |||||||
Sbjct: 124566 tgctcgacgccatcgaggtgctgc 124543
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>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01,
             complete sequence
          Length = 133331

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 132   ctctgcatcggcaagccggcggtg 155
             |||||||||||||||||| |||||
Sbjct: 48619 ctctgcatcggcaagccgccggtg 48596
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>gb|AC022515.5| Homo sapiens chromosome 19 clone CTB-59C6, complete sequence
          Length = 63905

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   cccgcggccgcgctccgccg 363
             ||||||||||||||||||||
Sbjct: 18039 cccgcggccgcgctccgccg 18020
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 199     cgctccgcgccggtgccgac 218
               ||||||||||||||||||||
Sbjct: 4677534 cgctccgcgccggtgccgac 4677553
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>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence
          Length = 250948

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    catcgcggcggccctcgcca 198
              ||||||||||||||||||||
Sbjct: 186531 catcgcggcggccctcgcca 186550
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>gb|AC104170.2| Homo sapiens chromosome 1 clone RP11-253A20, complete sequence
          Length = 141670

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 186    gcggccctcgccacgctccgcgccggtgccga 217
              |||||||||||| | |||||||||| ||||||
Sbjct: 101228 gcggccctcgccgccctccgcgccgctgccga 101197
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 435     tgctcgacgccatcgacgtgctgc 458
               |||||||||||||||| |||||||
Sbjct: 1834931 tgctcgacgccatcgaagtgctgc 1834954
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 132      ctctgcatcggcaagccggcggtg 155
                |||||||||||||||||| |||||
Sbjct: 34743058 ctctgcatcggcaagccgccggtg 34743035
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 177      cccatcgcggcggccctcgccacg 200
                |||||||||||||||| |||||||
Sbjct: 20968581 cccatcgcggcggcccccgccacg 20968604
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 337      cggcgaccccgcggccgcgc 356
                ||||||||||||||||||||
Sbjct: 39861970 cggcgaccccgcggccgcgc 39861951
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 449    gacgtgctgctggccaacaa 468
              ||||||||||||||||||||
Sbjct: 602282 gacgtgctgctggccaacaa 602301
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>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0004D12
          Length = 138136

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   cggcgaccccgcggccgcgc 356
             ||||||||||||||||||||
Sbjct: 42678 cggcgaccccgcggccgcgc 42659
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>gb|AF181662.1|AF181662 Zoogloea ramigera putative morphology protein 1 (mor1) and putative
           morphology protein 2 (mor2) genes, complete cds
          Length = 3253

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 186 gcggccctcgccacgctccgcgccggtg 213
           |||||| ||||||||||| |||||||||
Sbjct: 652 gcggccgtcgccacgctcggcgccggtg 625
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>dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0090E14
          Length = 161119

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 177   cccatcgcggcggccctcgccacg 200
             |||||||||||||||| |||||||
Sbjct: 95505 cccatcgcggcggcccccgccacg 95528
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>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1756_H07
          Length = 217205

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 275    gtcgtcgtcaaggtcagtgtcgcg 298
              |||||||||||||||| |||||||
Sbjct: 104458 gtcgtcgtcaaggtcattgtcgcg 104435
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>dbj|AK109942.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-F01, full
           insert sequence
          Length = 1322

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 132 ctctgcatcggcaagccggcggtg 155
           |||||||||||||||||| |||||
Sbjct: 52  ctctgcatcggcaagccgccggtg 75
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>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete
             sequence
          Length = 103264

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 132   ctctgcatcggcaagccggcggtg 155
             |||||||||||||||||| |||||
Sbjct: 85245 ctctgcatcggcaagccgccggtg 85222
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>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence
          Length = 1332022

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    ggtgccgacccattcatctt 229
              ||||||||||||||||||||
Sbjct: 633596 ggtgccgacccattcatctt 633577
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 444     ccatcgacgtgctgctggcc 463
               ||||||||||||||||||||
Sbjct: 2767650 ccatcgacgtgctgctggcc 2767631
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 435     tgctcgacgccatcgacgtgctgc 458
               ||||||||| ||||||||||||||
Sbjct: 1076912 tgctcgacgtcatcgacgtgctgc 1076889
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>gb|AF000634.1|AF000634 Lytechinus variegatus notch homolog mRNA, complete cds
          Length = 7646

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  gtctccgacctctgcatcgg 142
            ||||||||||||||||||||
Sbjct: 7414 gtctccgacctctgcatcgg 7433


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,753,356
Number of Sequences: 3902068
Number of extensions: 2753356
Number of successful extensions: 51123
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50019
Number of HSP's gapped (non-prelim): 1104
length of query: 598
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 575
effective length of database: 17,143,297,704
effective search space: 9857396179800
effective search space used: 9857396179800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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