ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart42b01 |
|---|---|
| Clone Library Name | barley_pub |
>PSL1_HUMAN (Q8TCT7) Signal peptide peptidase-like 2B (EC 3.4.23.-) (Protein| SPP-like 2B) (Protein SPPL2b) (Intramembrane protease 4) (IMP4) (Presenilin-like protein 1) Length = 592 Score = 33.5 bits (75), Expect = 0.39 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = +3 Query: 315 FWGTLARKAKSLIDEDGSPGQYDSLTRQQPPRDGTSPAMHRQHLQQPAPETWKSETPPSQ 494 FW T + AK L +P D QPP+D +P + ++PA W +E P Sbjct: 498 FW-TGSGFAKVLPPSPWAPAPADG---PQPPKDSATPLSPQPPSEEPATSPWPAEQSPKS 553 Query: 495 KRSEALAS 518 + SE + + Sbjct: 554 RTSEEMGA 561
>CNOT3_MOUSE (Q8K0V4) CCR4-NOT transcription complex subunit 3 (CCR4-associated| factor 3) Length = 751 Score = 33.1 bits (74), Expect = 0.51 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = +3 Query: 381 DSLTRQQPPRDGTSPAMHRQHLQQPA-PETWKSETPPSQKRSEALASS 521 DS Q P ++G+ P QH Q PA P T+ S PP+ + AL+S+ Sbjct: 293 DSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPT---TSALSST 337
>CNOT3_HUMAN (O75175) CCR4-NOT transcription complex subunit 3 (CCR4-associated| factor 3) Length = 753 Score = 32.7 bits (73), Expect = 0.67 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = +3 Query: 381 DSLTRQQPPRDGTSPAMHRQHLQQPA-PETWKSETPPS 491 DS Q P ++G+ P QH Q PA P T+ S PP+ Sbjct: 293 DSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPA 330
>ACES_CHICK (P36196) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)| Length = 767 Score = 32.0 bits (71), Expect = 1.1 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%) Frame = +3 Query: 363 GSPGQYDSLTRQQPPRDGTSPAMH------RQHLQQPAPETWKSETPPSQKRSE 506 GS Y + +P RD TSP + R H + +P+T+ ++ PP R E Sbjct: 436 GSADAYGAKAAPRPHRDETSPDAYGAKMPPRPHRDEASPDTYGAKMPPRPHRDE 489
>XERC_SHIFL (Q7ZAL9) Tyrosine recombinase xerC| Length = 298 Score = 31.2 bits (69), Expect = 1.9 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +2 Query: 284 HEELERGQVWILGDACSESKVTY*RGWVAW 373 H +LE G+VW++G E ++ R VAW Sbjct: 159 HLDLESGEVWVMGKGSKERRLPIGRNAVAW 188
>XERC_ECOLI (P0A8P6) Tyrosine recombinase xerC| Length = 298 Score = 31.2 bits (69), Expect = 1.9 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +2 Query: 284 HEELERGQVWILGDACSESKVTY*RGWVAW 373 H +LE G+VW++G E ++ R VAW Sbjct: 159 HLDLESGEVWVMGKGSKERRLPIGRNAVAW 188
>XERC_ECOL6 (P0A8P7) Tyrosine recombinase xerC| Length = 298 Score = 31.2 bits (69), Expect = 1.9 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +2 Query: 284 HEELERGQVWILGDACSESKVTY*RGWVAW 373 H +LE G+VW++G E ++ R VAW Sbjct: 159 HLDLESGEVWVMGKGSKERRLPIGRNAVAW 188
>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and| gyrB (ORF 3) Length = 437 Score = 30.4 bits (67), Expect = 3.3 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = +3 Query: 393 RQQPPRDGTSPAMHRQHLQQ-PAP 461 R+QPPR G S HR+HL+Q P P Sbjct: 171 RRQPPRRGRSRGTHRRHLRQAPRP 194
>PTPA1_NEUCR (Q7S6M5) Serine/threonine-protein phosphatase 2A activator 1 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1) (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl phosphatase activator 1) Length = 617 Score = 30.4 bits (67), Expect = 3.3 Identities = 14/50 (28%), Positives = 25/50 (50%) Frame = +3 Query: 384 SLTRQQPPRDGTSPAMHRQHLQQPAPETWKSETPPSQKRSEALASSLNYI 533 +++ +P DG +Q QQ A E + + PP ++ALA+ L + Sbjct: 83 TVSTSEPTTDGQQQQQQQQQRQQKAEEVDEQQQPPPPPPTDALAAKLQLL 132
>SYV_MOUSE (Q9Z1Q9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1263 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = +3 Query: 375 QYDSLTRQQPPRDGTSPAMHRQHLQQPAPETWKSETPPSQKRSEALASSLNY 530 Q T+QQPP P ++ + P T+ TPP +K+ + A +Y Sbjct: 248 QQKQKTQQQPPHGEKKPKPEKKEKRDPGVITYDLPTPPGEKKDVSGAMPDSY 299
>CKI3_SCHPO (O74135) Casein kinase I homolog 3 (EC 2.7.11.1)| Length = 439 Score = 29.6 bits (65), Expect = 5.6 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +3 Query: 357 EDGSPGQYDSLTRQQPPRDGTSPAMHRQHLQQPAPETWKSETPPSQKRSEALA 515 +DG PG+ S QQ + ++ Q ++QPAP+T T P+Q ++ A Sbjct: 365 KDGIPGKAASPQVQQQQQTSSAQQQQPQRVEQPAPQT----TQPTQVDTQQAA 413
>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)| Length = 5120 Score = 29.3 bits (64), Expect = 7.4 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 10/70 (14%) Frame = +3 Query: 309 YGFWGTLARKAKSLIDEDGSPGQYDS-----LTRQ-----QPPRDGTSPAMHRQHLQQPA 458 +GF ++ +A SLI G PG S T+Q QPP P Q P Sbjct: 709 FGFGASIFSQASSLISTAGQPGSQTSGPAPPATKQPQPPSQPPASQAPPKEAAQAQPPPK 768 Query: 459 PETWKSETPP 488 K ET P Sbjct: 769 AAPTKKETKP 778
>REM1_HUMAN (O75628) GTP-binding protein REM 1 (Rad and Gem-like GTP-binding| protein 1) (GTPase-regulating endothelial cell sprouting) Length = 298 Score = 29.3 bits (64), Expect = 7.4 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +3 Query: 369 PGQYDSL--TRQQPPRDGTSPAMHRQHLQ-QPAPETWKSETPPSQKRSEAL 512 PG+ ++ T+ Q PR G S +++ + PAP+ W SE+ S+ EAL Sbjct: 30 PGRLSTVPSTQSQHPRLGQSASLNPPTQKPSPAPDDWSSESSDSEGSWEAL 80
>XKR4_MOUSE (Q5GH67) XK-related protein 4| Length = 647 Score = 29.3 bits (64), Expect = 7.4 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 7/34 (20%) Frame = -3 Query: 484 GVSDFHVSGAGCC-------KCCLCIAGDVPSLG 404 G D +G GCC +CC C AG S G Sbjct: 43 GAEDTEAAGGGCCPDGGGCSRCCCCCAGSGGSAG 76
>DVL2_MOUSE (Q60838) Segment polarity protein dishevelled homolog DVL-2| (Dishevelled-2) (DSH homolog 2) Length = 736 Score = 29.3 bits (64), Expect = 7.4 Identities = 18/53 (33%), Positives = 22/53 (41%) Frame = +3 Query: 345 SLIDEDGSPGQYDSLTRQQPPRDGTSPAMHRQHLQQPAPETWKSETPPSQKRS 503 SL D DGS G D T P P + Q PAP + + PP + S Sbjct: 520 SLNDNDGSSGASDQDTLAPLPGATPWPLLPTFSYQYPAPHPYSPQPPPYHELS 572
>DVL2_HUMAN (O14641) Segment polarity protein dishevelled homolog DVL-2| (Dishevelled-2) (DSH homolog 2) Length = 736 Score = 29.3 bits (64), Expect = 7.4 Identities = 18/53 (33%), Positives = 22/53 (41%) Frame = +3 Query: 345 SLIDEDGSPGQYDSLTRQQPPRDGTSPAMHRQHLQQPAPETWKSETPPSQKRS 503 SL D DGS G D T P P + Q PAP + + PP + S Sbjct: 520 SLNDNDGSSGASDQDTLAPLPGATPWPLLPTFSYQYPAPHPYSPQPPPYHELS 572
>XKR4_PANTR (Q49LS4) XK-related protein 4| Length = 650 Score = 29.3 bits (64), Expect = 7.4 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 7/34 (20%) Frame = -3 Query: 484 GVSDFHVSGAGCC-------KCCLCIAGDVPSLG 404 G D +G GCC +CC C AG S G Sbjct: 43 GAEDEEAAGGGCCPDGGGCSRCCCCCAGSGSSAG 76
>UBQL1_RAT (Q9JJP9) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) Length = 582 Score = 29.3 bits (64), Expect = 7.4 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = +3 Query: 363 GSPGQYDSLTRQQPPRDGTSPAMHRQHLQQPAPETWKSETPPSQKRSEALASSLNYI 533 G+P + SL +GT P+ R + P P W +TP S S + S+ N + Sbjct: 284 GNP--FASLVSSPSSAEGTQPS--RTENRDPLPNPWAPQTPQSSPASGSTGSTTNTV 336
>XERC_ECO57 (Q8X4T6) Tyrosine recombinase xerC| Length = 298 Score = 28.9 bits (63), Expect = 9.6 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +2 Query: 284 HEELERGQVWILGDACSESKVTY*RGWVAW 373 H +LE G+VW++G E ++ R ++W Sbjct: 159 HLDLESGEVWVMGKGSKERRLPIGRNALSW 188
>XKR4_HUMAN (Q5GH76) XK-related protein 4| Length = 650 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 7/34 (20%) Frame = -3 Query: 484 GVSDFHVSGAGCC-------KCCLCIAGDVPSLG 404 G D +G GCC +CC C AG S G Sbjct: 43 GAEDEEAAGGGCCPDGGGCSRCCCCCAGSGGSAG 76
>SEH1L_HUMAN (Q96EE3) Nucleoporin SEH1-like (SEC13-like protein)| Length = 421 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = -1 Query: 363 HPRQ*VTLLSEQASPKIHTWPRSSSS-WTCTHSWKS-QGTGW 244 H R+ T S+Q+ + W +S S W CT SWK+ G+ W Sbjct: 23 HGRRMATCSSDQS---VKVWDKSESGDWHCTASWKTHSGSVW 61 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,162,693 Number of Sequences: 219361 Number of extensions: 955251 Number of successful extensions: 3385 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3366 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
