ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart42b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
2dbj|AK071944.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
3gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome... 109 1e-20
4gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome... 109 1e-20
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
6gb|U13875.1| Caenorhabditis elegans cosmid C26E6, complete sequence 48 0.030
7gb|AC160552.13| Mus musculus chromosome 3, clone RP23-326D6, com... 46 0.12
8gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 46 0.12
9gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 46 0.12
10gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 46 0.12
11gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.9
12gb|AC126593.5| Rattus norvegicus 13 BAC CH230-103N15 (Children's... 42 1.9
13gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.9
14gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 42 1.9
15gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-1... 42 1.9
16gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA... 42 1.9
17gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar N... 42 1.9
18emb|AL050316.15|HSDJ911I5 Human DNA sequence from clone RP5-911I... 42 1.9
19emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 42 1.9
20emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.9
21emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 42 1.9
22emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 42 1.9
23emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.9
24emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete ... 42 1.9
25emb|BX537331.2| Mouse DNA sequence from clone RP23-338B23 on chr... 42 1.9
26dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
27gb|AC131009.7| Homo sapiens 12 BAC RP11-417L19 (Roswell Park Can... 42 1.9
28dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
29dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 42 1.9
30dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
31dbj|AK065725.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
32gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.9
33dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochond... 42 1.9
34ref|XM_464510.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.3
35ref|XM_506750.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 7.3
36gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 7.3
37ref|XM_526699.1| PREDICTED: Pan troglodytes similar to BRN-3b (L... 40 7.3
38ref|NM_191784.1| Oryza sativa (japonica cultivar-group), predic... 40 7.3
39ref|XM_470481.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.3
40ref|XM_470417.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.3
41ref|XM_472293.1| Oryza sativa (japonica cultivar-group), predic... 40 7.3
42gb|AC158958.4| Mus musculus chromosome 1, clone RP23-31E12, comp... 40 7.3
43gb|AC158943.9| Mus musculus chromosome 1, clone RP24-272N10, com... 40 7.3
44gb|AY659271.1| Synthetic construct Peudomonas aeruginosa clone F... 40 7.3
45ref|XM_676029.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 7.3
46ref|XM_659232.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 7.3
47gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.3
48gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic... 40 7.3
49ref|XM_812100.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 7.3
50ref|XM_803524.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 7.3
51gb|AC121949.3| Mus musculus BAC clone RP24-215I11 from 18, compl... 40 7.3
52gb|AC134528.6| Mus musculus BAC clone RP24-502G8 from chromosome... 40 7.3
53gb|AC117633.6| Mus musculus, clone RP23-200C8, complete sequence 40 7.3
54emb|X71488.1|HSBRN3B H.sapiens Brn3B mRNA 40 7.3
55emb|BX908789.1| Neurospora crassa DNA linkage group VII BAC clon... 40 7.3
56emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.3
57emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4,... 40 7.3
58emb|AJ223012.1|AMM223012 Amycolatopsis mediterranei genes encodi... 40 7.3
59gb|AF303468.1| Oryza sativa elongation factor Tu (tufM) mRNA, co... 40 7.3
60emb|X74106.1|NTGRPR N.tabacum gene for glycine-rich protein 40 7.3
61gb|AC099325.4| Oryza sativa chromosome 10 BAC OSJNBb0048O22 geno... 40 7.3
62gb|AC099040.10| Oryza sativa chromosome 10 BAC OSJNBa0004P12 gen... 40 7.3
63gb|AC093887.3| Homo sapiens BAC clone RP11-667D12 from 4, comple... 40 7.3
64ref|NM_004575.1| Homo sapiens POU domain, class 4, transcription... 40 7.3
65gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 40 7.3
66gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.3
67dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
68dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
69dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
70dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
71dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
72dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
73dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
74gb|AE004930.1| Pseudomonas aeruginosa PAO1, section 491 of 529 o... 40 7.3
75gb|AC126915.2| Homo sapiens chromosome 5 clone RP11-21I4, comple... 40 7.3
76gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genom... 40 7.3
77dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
78gb|DQ163913.1| Bacteriophage PA73, complete genome 40 7.3
79gb|AY522343.1| Emericella nidulans HbrB gene, complete cds 40 7.3
80gb|AE005037.1| Halobacterium sp. NRC-1 section 68 of 170 of the ... 40 7.3
81dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
82emb|X14694.1|PAARCA Pseudomonas aeruginosa arcA gene for arginin... 40 7.3
83dbj|AK109628.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
84dbj|AK102069.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
85dbj|AK100683.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
86dbj|AK067916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
87emb|BX664607.21| Zebrafish DNA sequence from clone CH211-132B12 ... 40 7.3
88gb|AY108602.1| Zea mays PCO119028 mRNA sequence 40 7.3
89gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 7.3
90gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
91emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 40 7.3
92gb|AC101869.13| Mus musculus chromosome 1, clone RP23-348D4, com... 40 7.3
93gb|U06233.1|HSU06233 Human POU domain protein (Brn-3b) mRNA, com... 40 7.3 
>dbj|AK105270.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-F07, full
           insert sequence
          Length = 1528

 Score =  119 bits (60), Expect = 1e-23
 Identities = 156/188 (82%)
 Strand = Plus / Plus

                                                                       
Query: 227 ccacgagccctccgtctccaccccgtcccctgactcttccagctatgggtacacgtccat 286
           ||||||||||||||||||||| || ||||| |  |||||  | ||||  ||||| |||||
Sbjct: 259 ccacgagccctccgtctccacgccttcccccggttcttcgggttatgaatacacatccat 318

                                                                       
Query: 287 gaagagcttgaacgaggccaagtatggattttgggggacgcttgctcggaaagcaaagtc 346
           ||||| |||||| ||||| ||||| |||||||||||| | |||||||||||||| |||||
Sbjct: 319 gaagaacttgaatgaggctaagtacggattttggggggcccttgctcggaaagccaagtc 378

                                                                       
Query: 347 acttattgacgaggatgggtcgcctgggcaatatgattccctgacaagacagcagccgcc 406
             || | ||||||||||| || || ||||| |||||||||| | | || ||||||||| |
Sbjct: 379 ttttctggacgaggatggttcaccagggcagtatgattccccggcgaggcagcagccgtc 438

                   
Query: 407 cagagatg 414
            |||||||
Sbjct: 439 aagagatg 446



 Score =  109 bits (55), Expect = 1e-20
 Identities = 58/59 (98%)
 Strand = Plus / Plus

                                                                      
Query: 102 tccccgccgcaggactccctcgccgcgcaggccatgcgcgcctccgccgcccaccgcga 160
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 122 tccccgccgcaggactccctcgccgcgcaggccatgcgcgcctccgccgcgcaccgcga 180



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                       
Query: 465 acatggaaatcagagactcctccatctcagaagaggtctgaggcattagcttcctccctt 524
           ||||||||||| ||||| ||||||||||| |||||||| |||||  ||||||||||||| 
Sbjct: 497 acatggaaatccgagacacctccatctcataagaggtccgaggccatagcttcctccctc 556

                      
Query: 525 aactatattgg 535
           |||||||||||
Sbjct: 557 aactatattgg 567



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                         
Query: 7  ccgccgccgcgaccgcgaccgcgatggcttaccgccgtaagccgcag 53
          |||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 9  ccgccgccgcgaccgcgaccgccatggcgtaccgccggaagccgcag 55
to top
>dbj|AK071944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013087B05, full
           insert sequence
          Length = 1533

 Score =  119 bits (60), Expect = 1e-23
 Identities = 156/188 (82%)
 Strand = Plus / Plus

                                                                       
Query: 227 ccacgagccctccgtctccaccccgtcccctgactcttccagctatgggtacacgtccat 286
           ||||||||||||||||||||| || ||||| |  |||||  | ||||  ||||| |||||
Sbjct: 264 ccacgagccctccgtctccacgccttcccccggttcttcgggttatgaatacacatccat 323

                                                                       
Query: 287 gaagagcttgaacgaggccaagtatggattttgggggacgcttgctcggaaagcaaagtc 346
           ||||| |||||| ||||| ||||| |||||||||||| | |||||||||||||| |||||
Sbjct: 324 gaagaacttgaatgaggctaagtacggattttggggggcccttgctcggaaagccaagtc 383

                                                                       
Query: 347 acttattgacgaggatgggtcgcctgggcaatatgattccctgacaagacagcagccgcc 406
             || | ||||||||||| || || ||||| |||||||||| | | || ||||||||| |
Sbjct: 384 ttttctggacgaggatggttcaccagggcagtatgattccccggcgaggcagcagccgtc 443

                   
Query: 407 cagagatg 414
            |||||||
Sbjct: 444 aagagatg 451



 Score =  109 bits (55), Expect = 1e-20
 Identities = 58/59 (98%)
 Strand = Plus / Plus

                                                                      
Query: 102 tccccgccgcaggactccctcgccgcgcaggccatgcgcgcctccgccgcccaccgcga 160
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 127 tccccgccgcaggactccctcgccgcgcaggccatgcgcgcctccgccgcgcaccgcga 185



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                       
Query: 465 acatggaaatcagagactcctccatctcagaagaggtctgaggcattagcttcctccctt 524
           ||||||||||| ||||| ||||||||||| |||||||| |||||  ||||||||||||| 
Sbjct: 502 acatggaaatccgagacacctccatctcataagaggtccgaggccatagcttcctccctc 561

                      
Query: 525 aactatattgg 535
           |||||||||||
Sbjct: 562 aactatattgg 572



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                         
Query: 7  ccgccgccgcgaccgcgaccgcgatggcttaccgccgtaagccgcag 53
          |||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 14 ccgccgccgcgaccgcgaccgccatggcgtaccgccggaagccgcag 60
to top
>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12,
            complete sequence
          Length = 102029

 Score =  109 bits (55), Expect = 1e-20
 Identities = 58/59 (98%)
 Strand = Plus / Plus

                                                                       
Query: 102  tccccgccgcaggactccctcgccgcgcaggccatgcgcgcctccgccgcccaccgcga 160
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7724 tccccgccgcaggactccctcgccgcgcaggccatgcgcgcctccgccgcgcaccgcga 7782



 Score =  101 bits (51), Expect = 2e-18
 Identities = 117/139 (84%)
 Strand = Plus / Plus

                                                                        
Query: 276  tacacgtccatgaagagcttgaacgaggccaagtatggattttgggggacgcttgctcgg 335
            ||||| |||||||||| |||||| ||||| ||||| |||||||||||| | |||||||||
Sbjct: 8260 tacacatccatgaagaacttgaatgaggctaagtacggattttggggggcccttgctcgg 8319

                                                                        
Query: 336  aaagcaaagtcacttattgacgaggatgggtcgcctgggcaatatgattccctgacaaga 395
            ||||| |||||  || | ||||||||||| || || ||||| |||||||||| | | || 
Sbjct: 8320 aaagccaagtcttttctggacgaggatggttcaccagggcagtatgattccccggcgagg 8379

                               
Query: 396  cagcagccgcccagagatg 414
            ||||||||| | |||||||
Sbjct: 8380 cagcagccgtcaagagatg 8398



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                        
Query: 465  acatggaaatcagagactcctccatctcagaagaggtctgaggcattagcttcctccctt 524
            ||||||||||| ||||| ||||||||||| |||||||| |||||  ||||||||||||| 
Sbjct: 8747 acatggaaatccgagacacctccatctcataagaggtccgaggccatagcttcctccctc 8806

                       
Query: 525  aactatattgg 535
            |||||||||||
Sbjct: 8807 aactatattgg 8817



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                           
Query: 7    ccgccgccgcgaccgcgaccgcgatggcttaccgccgtaagccgcag 53
            |||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 7611 ccgccgccgcgaccgcgaccgccatggcgtaccgccggaagccgcag 7657



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 227  ccacgagccctccgtctccaccccgtcccc 256
            ||||||||||||||||||||| || |||||
Sbjct: 7861 ccacgagccctccgtctccacgccttcccc 7890
to top
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
              complete sequence
          Length = 117724

 Score =  109 bits (55), Expect = 1e-20
 Identities = 58/59 (98%)
 Strand = Plus / Plus

                                                                         
Query: 102    tccccgccgcaggactccctcgccgcgcaggccatgcgcgcctccgccgcccaccgcga 160
              |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 105802 tccccgccgcaggactccctcgccgcgcaggccatgcgcgcctccgccgcgcaccgcga 105860



 Score =  101 bits (51), Expect = 2e-18
 Identities = 117/139 (84%)
 Strand = Plus / Plus

                                                                          
Query: 276    tacacgtccatgaagagcttgaacgaggccaagtatggattttgggggacgcttgctcgg 335
              ||||| |||||||||| |||||| ||||| ||||| |||||||||||| | |||||||||
Sbjct: 106338 tacacatccatgaagaacttgaatgaggctaagtacggattttggggggcccttgctcgg 106397

                                                                          
Query: 336    aaagcaaagtcacttattgacgaggatgggtcgcctgggcaatatgattccctgacaaga 395
              ||||| |||||  || | ||||||||||| || || ||||| |||||||||| | | || 
Sbjct: 106398 aaagccaagtcttttctggacgaggatggttcaccagggcagtatgattccccggcgagg 106457

                                 
Query: 396    cagcagccgcccagagatg 414
              ||||||||| | |||||||
Sbjct: 106458 cagcagccgtcaagagatg 106476



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                          
Query: 465    acatggaaatcagagactcctccatctcagaagaggtctgaggcattagcttcctccctt 524
              ||||||||||| ||||| ||||||||||| |||||||| |||||  ||||||||||||| 
Sbjct: 106825 acatggaaatccgagacacctccatctcataagaggtccgaggccatagcttcctccctc 106884

                         
Query: 525    aactatattgg 535
              |||||||||||
Sbjct: 106885 aactatattgg 106895



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                             
Query: 7      ccgccgccgcgaccgcgaccgcgatggcttaccgccgtaagccgcag 53
              |||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 105689 ccgccgccgcgaccgcgaccgccatggcgtaccgccggaagccgcag 105735



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 227    ccacgagccctccgtctccaccccgtcccc 256
              ||||||||||||||||||||| || |||||
Sbjct: 105939 ccacgagccctccgtctccacgccttcccc 105968
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  109 bits (55), Expect = 1e-20
 Identities = 58/59 (98%)
 Strand = Plus / Plus

                                                                           
Query: 102      tccccgccgcaggactccctcgccgcgcaggccatgcgcgcctccgccgcccaccgcga 160
                |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 14377016 tccccgccgcaggactccctcgccgcgcaggccatgcgcgcctccgccgcgcaccgcga 14377074



 Score =  101 bits (51), Expect = 2e-18
 Identities = 117/139 (84%)
 Strand = Plus / Plus

                                                                            
Query: 276      tacacgtccatgaagagcttgaacgaggccaagtatggattttgggggacgcttgctcgg 335
                ||||| |||||||||| |||||| ||||| ||||| |||||||||||| | |||||||||
Sbjct: 14377552 tacacatccatgaagaacttgaatgaggctaagtacggattttggggggcccttgctcgg 14377611

                                                                            
Query: 336      aaagcaaagtcacttattgacgaggatgggtcgcctgggcaatatgattccctgacaaga 395
                ||||| |||||  || | ||||||||||| || || ||||| |||||||||| | | || 
Sbjct: 14377612 aaagccaagtcttttctggacgaggatggttcaccagggcagtatgattccccggcgagg 14377671

                                   
Query: 396      cagcagccgcccagagatg 414
                ||||||||| | |||||||
Sbjct: 14377672 cagcagccgtcaagagatg 14377690



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                            
Query: 465      acatggaaatcagagactcctccatctcagaagaggtctgaggcattagcttcctccctt 524
                ||||||||||| ||||| ||||||||||| |||||||| |||||  ||||||||||||| 
Sbjct: 14378039 acatggaaatccgagacacctccatctcataagaggtccgaggccatagcttcctccctc 14378098

                           
Query: 525      aactatattgg 535
                |||||||||||
Sbjct: 14378099 aactatattgg 14378109



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                               
Query: 7        ccgccgccgcgaccgcgaccgcgatggcttaccgccgtaagccgcag 53
                |||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 14376903 ccgccgccgcgaccgcgaccgccatggcgtaccgccggaagccgcag 14376949



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 227      ccacgagccctccgtctccaccccgtcccc 256
                ||||||||||||||||||||| || |||||
Sbjct: 14377153 ccacgagccctccgtctccacgccttcccc 14377182
to top
>gb|U13875.1| Caenorhabditis elegans cosmid C26E6, complete sequence
          Length = 39971

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 64    agcaccaccaccaccaaccgcagc 87
             ||||||||||||||||||||||||
Sbjct: 29895 agcaccaccaccaccaaccgcagc 29918
to top
>gb|AC160552.13| Mus musculus chromosome 3, clone RP23-326D6, complete sequence
          Length = 210051

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 66     caccaccaccaccaaccgcagcc 88
              |||||||||||||||||||||||
Sbjct: 175326 caccaccaccaccaaccgcagcc 175304
to top
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 119     cctcgccgcgcaggccatgcgcg 141
               |||||||||||||||||||||||
Sbjct: 3021485 cctcgccgcgcaggccatgcgcg 3021463
to top
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 119     cctcgccgcgcaggccatgcgcg 141
               |||||||||||||||||||||||
Sbjct: 3937889 cctcgccgcgcaggccatgcgcg 3937867
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 8      cgccgccgcgaccgcgaccgcga 30
              |||||||||||||||||||||||
Sbjct: 383532 cgccgccgcgaccgcgaccgcga 383554
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 8       cgccgccgcgaccgcgaccgc 28
               |||||||||||||||||||||
Sbjct: 1725689 cgccgccgcgaccgcgaccgc 1725709
to top
>gb|AC126593.5| Rattus norvegicus 13 BAC CH230-103N15 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 169168

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 491    tcagaagaggtctgaggcatt 511
              |||||||||||||||||||||
Sbjct: 130905 tcagaagaggtctgaggcatt 130925
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 8       cgccgccgcgaccgcgaccgc 28
               |||||||||||||||||||||
Sbjct: 2971174 cgccgccgcgaccgcgaccgc 2971194
to top
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 10      ccgccgcgaccgcgaccgcgatggc 34
               |||||| ||||||||||||||||||
Sbjct: 1713706 ccgccgtgaccgcgaccgcgatggc 1713730
to top
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion,
              complete genome
          Length = 491515

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 388    tgacaagacagcagccgccca 408
              |||||||||||||||||||||
Sbjct: 389021 tgacaagacagcagccgccca 389001
to top
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion,
              complete genome
          Length = 490673

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 388    tgacaagacagcagccgccca 408
              |||||||||||||||||||||
Sbjct: 388194 tgacaagacagcagccgccca 388174
to top
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion,
              complete genome
          Length = 490669

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 388    tgacaagacagcagccgccca 408
              |||||||||||||||||||||
Sbjct: 388190 tgacaagacagcagccgccca 388170
to top
>emb|AL050316.15|HSDJ911I5 Human DNA sequence from clone RP5-911I5 on chromosome 20q13.11-13.2
             Contains ESTs, STSs and GSSs, complete sequence
          Length = 72289

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 242   ctccaccccgtcccctgactcttcc 266
             ||||||||| |||||||||||||||
Sbjct: 67456 ctccaccccatcccctgactcttcc 67432
to top
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 375     caatatgattccctgacaagacagc 399
               ||||||||||||| |||||||||||
Sbjct: 1078024 caatatgattcccggacaagacagc 1078000
to top
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      gccgccgcgaccgcgaccgcg 29
              |||||||||||||||||||||
Sbjct: 298212 gccgccgcgaccgcgaccgcg 298232
to top
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      gccgccgcgaccgcgaccgcg 29
              |||||||||||||||||||||
Sbjct: 209686 gccgccgcgaccgcgaccgcg 209706
to top
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 9      gccgccgcgaccgcgaccgcg 29
              |||||||||||||||||||||
Sbjct: 188812 gccgccgcgaccgcgaccgcg 188792
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 8       cgccgccgcgaccgcgaccgc 28
               |||||||||||||||||||||
Sbjct: 2701155 cgccgccgcgaccgcgaccgc 2701175
to top
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29
          Length = 299050

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 10     ccgccgcgaccgcgaccgcga 30
              |||||||||||||||||||||
Sbjct: 174258 ccgccgcgaccgcgaccgcga 174278
to top
>emb|BX537331.2| Mouse DNA sequence from clone RP23-338B23 on chromosome 2, complete
              sequence
          Length = 171790

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 223    ggagccacgagccctccgtctccac 247
              ||||||||||||||||| |||||||
Sbjct: 160953 ggagccacgagccctccctctccac 160977
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 133      ccatgcgcgcctccgccgccc 153
                |||||||||||||||||||||
Sbjct: 22271055 ccatgcgcgcctccgccgccc 22271035
to top
>gb|AC131009.7| Homo sapiens 12 BAC RP11-417L19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 170327

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 235   cctccgtctccaccccgtcccctgactct 263
             ||||| ||||||||||| |||||||||||
Sbjct: 50449 cctccttctccaccccgccccctgactct 50477
to top
>dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0070E11
          Length = 142855

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 133   ccatgcgcgcctccgccgccc 153
             |||||||||||||||||||||
Sbjct: 90953 ccatgcgcgcctccgccgccc 90933
to top
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 375     caatatgattccctgacaagacagc 399
               ||||||||||||| |||||||||||
Sbjct: 1138797 caatatgattcccggacaagacagc 1138773
to top
>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1155_H10
          Length = 140475

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 133   ccatgcgcgcctccgccgccc 153
             |||||||||||||||||||||
Sbjct: 33063 ccatgcgcgcctccgccgccc 33043
to top
>dbj|AK065725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035O15, full
           insert sequence
          Length = 4175

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 133 ccatgcgcgcctccgccgccc 153
           |||||||||||||||||||||
Sbjct: 235 ccatgcgcgcctccgccgccc 255
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 8       cgccgccgcgaccgcgaccgc 28
               |||||||||||||||||||||
Sbjct: 2192263 cgccgccgcgaccgcgaccgc 2192243
to top
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome
          Length = 490520

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 388    tgacaagacagcagccgccca 408
              |||||||||||||||||||||
Sbjct: 388052 tgacaagacagcagccgccca 388032
to top
>ref|XM_464510.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1762

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  cgagcaccaccaccaccaac 81
           ||||||||||||||||||||
Sbjct: 509 cgagcaccaccaccaccaac 490
to top
>ref|XM_506750.1| PREDICTED Oryza sativa (japonica cultivar-group), P0419A09.8 mRNA
          Length = 2218

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  cgagcaccaccaccaccaac 81
           ||||||||||||||||||||
Sbjct: 576 cgagcaccaccaccaccaac 557
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 6       tccgccgccgcgaccgcgac 25
               ||||||||||||||||||||
Sbjct: 1334307 tccgccgccgcgaccgcgac 1334288
to top
>ref|XM_526699.1| PREDICTED: Pan troglodytes similar to BRN-3b (LOC471317), mRNA
          Length = 1557

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  caccaccaccaccaaccgca 85
           ||||||||||||||||||||
Sbjct: 862 caccaccaccaccaaccgca 881
to top
>ref|NM_191784.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 7   ccgccgccgcgaccgcgaccgcga 30
           ||||| ||||||||||||||||||
Sbjct: 233 ccgcccccgcgaccgcgaccgcga 256
to top
>ref|XM_470481.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3615

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 508 cattagcttcctcccttaac 527
           ||||||||||||||||||||
Sbjct: 127 cattagcttcctcccttaac 108
to top
>ref|XM_470417.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1725

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 7  ccgccgccgcgaccgcgaccgcgatggc 34
          |||||||||||| ||||| |||||||||
Sbjct: 38 ccgccgccgcgaacgcgaacgcgatggc 65
to top
>ref|XM_472293.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1992

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 11  cgccgcgaccgcgaccgcga 30
           ||||||||||||||||||||
Sbjct: 180 cgccgcgaccgcgaccgcga 199
to top
>gb|AC158958.4| Mus musculus chromosome 1, clone RP23-31E12, complete sequence
          Length = 213244

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 438    caacacttacaacagccagc 457
              ||||||||||||||||||||
Sbjct: 173070 caacacttacaacagccagc 173051
to top
>gb|AC158943.9| Mus musculus chromosome 1, clone RP24-272N10, complete sequence
          Length = 186003

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 481    ctcctccatctcagaagagg 500
              ||||||||||||||||||||
Sbjct: 110366 ctcctccatctcagaagagg 110347
to top
>gb|AY659271.1| Synthetic construct Peudomonas aeruginosa clone FLH051848.01F PA5171
            gene, partial cds
          Length = 1257

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    ccgccgccgcgaccgcgacc 26
            ||||||||||||||||||||
Sbjct: 1211 ccgccgccgcgaccgcgacc 1192
to top
>ref|XM_676029.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7852.2), mRNA
          Length = 1482

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 434  tagacaacacttacaacagccagc 457
            ||||||||| ||||||||||||||
Sbjct: 1481 tagacaacaattacaacagccagc 1458
to top
>ref|XM_659232.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6720.2), mRNA
          Length = 7323

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 11   cgccgcgaccgcgaccgcga 30
            ||||||||||||||||||||
Sbjct: 5023 cgccgcgaccgcgaccgcga 5042
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 508      cattagcttcctcccttaac 527
                ||||||||||||||||||||
Sbjct: 35862232 cattagcttcctcccttaac 35862213



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 7        ccgccgccgcgaccgcgaccgcgatggc 34
                |||||||||||| ||||| |||||||||
Sbjct: 35526256 ccgccgccgcgaacgcgaacgcgatggc 35526229
to top
>gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic gene cluster
          Length = 109528

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 119   cctcgccgcgcaggccatgcgcgc 142
             |||||||||||||||| |||||||
Sbjct: 58404 cctcgccgcgcaggccctgcgcgc 58427
to top
>ref|XM_812100.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506475.80) partial mRNA
          Length = 3996

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   caccaccaccaccaaccgca 85
            ||||||||||||||||||||
Sbjct: 1810 caccaccaccaccaaccgca 1791
to top
>ref|XM_803524.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053511435.10) partial mRNA
          Length = 3379

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   caccaccaccaccaaccgca 85
            ||||||||||||||||||||
Sbjct: 1196 caccaccaccaccaaccgca 1177
to top
>gb|AC121949.3| Mus musculus BAC clone RP24-215I11 from 18, complete sequence
          Length = 153426

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 64    agcaccaccaccaccaaccgcagc 87
             |||||||||||||||||| |||||
Sbjct: 60252 agcaccaccaccaccaacagcagc 60275
to top
>gb|AC134528.6| Mus musculus BAC clone RP24-502G8 from chromosome 10, complete sequence
          Length = 166393

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 64     agcaccaccaccaccaaccgcagc 87
              |||||||||||||||||| |||||
Sbjct: 153857 agcaccaccaccaccaacagcagc 153834
to top
>gb|AC117633.6| Mus musculus, clone RP23-200C8, complete sequence
          Length = 224221

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 64    agcaccaccaccaccaaccgcagc 87
             |||||||||||||||||| |||||
Sbjct: 34459 agcaccaccaccaccaacagcagc 34436
to top
>emb|X71488.1|HSBRN3B H.sapiens Brn3B mRNA
          Length = 795

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  caccaccaccaccaaccgca 85
           ||||||||||||||||||||
Sbjct: 100 caccaccaccaccaaccgca 119
to top
>emb|BX908789.1| Neurospora crassa DNA linkage group VII BAC clone B13D24
          Length = 107482

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    gagcaccaccaccaccaacc 82
             ||||||||||||||||||||
Sbjct: 28888 gagcaccaccaccaccaacc 28907
to top
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 13      ccgcgaccgcgaccgcgatg 32
               ||||||||||||||||||||
Sbjct: 1190316 ccgcgaccgcgaccgcgatg 1190297
to top
>emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08,
             complete sequence
          Length = 140449

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    cgccgcgaccgcgaccgcga 30
             ||||||||||||||||||||
Sbjct: 39613 cgccgcgaccgcgaccgcga 39632
to top
>emb|AJ223012.1|AMM223012 Amycolatopsis mediterranei genes encoding rifamycin polyketide
             synthases, ORFs 1 to 5
          Length = 53784

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 119   cctcgccgcgcaggccatgcgcgc 142
             |||||||||||||||| |||||||
Sbjct: 41999 cctcgccgcgcaggccctgcgcgc 42022
to top
>gb|AF303468.1| Oryza sativa elongation factor Tu (tufM) mRNA, complete cds;
          nuclear gene for mitochondrial product
          Length = 1713

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 7  ccgccgccgcgaccgcgaccgcgatggc 34
          |||||||||||| ||||| |||||||||
Sbjct: 38 ccgccgccgcgaacgcgaacgcgatggc 65
to top
>emb|X74106.1|NTGRPR N.tabacum gene for glycine-rich protein
          Length = 888

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 66  caccaccaccaccaaccgca 85
           ||||||||||||||||||||
Sbjct: 505 caccaccaccaccaaccgca 486
to top
>gb|AC099325.4| Oryza sativa chromosome 10 BAC OSJNBb0048O22 genomic sequence, complete
              sequence
          Length = 134825

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 5      ttccgccgccgcgaccgcgaccgc 28
              ||||||| ||||||||||||||||
Sbjct: 116294 ttccgccaccgcgaccgcgaccgc 116317
to top
>gb|AC099040.10| Oryza sativa chromosome 10 BAC OSJNBa0004P12 genomic sequence, complete
              sequence
          Length = 137029

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 5      ttccgccgccgcgaccgcgaccgc 28
              ||||||| ||||||||||||||||
Sbjct: 118664 ttccgccaccgcgaccgcgaccgc 118641
to top
>gb|AC093887.3| Homo sapiens BAC clone RP11-667D12 from 4, complete sequence
          Length = 192886

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     caccaccaccaccaaccgca 85
              ||||||||||||||||||||
Sbjct: 106150 caccaccaccaccaaccgca 106169
to top
>ref|NM_004575.1| Homo sapiens POU domain, class 4, transcription factor 2 (POU4F2),
           mRNA
          Length = 3110

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  caccaccaccaccaaccgca 85
           ||||||||||||||||||||
Sbjct: 750 caccaccaccaccaaccgca 769
to top
>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
             sequence
          Length = 145115

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 508   cattagcttcctcccttaac 527
             ||||||||||||||||||||
Sbjct: 98893 cattagcttcctcccttaac 98912
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   cgccgcgaccgcgaccgcga 30
            ||||||||||||||||||||
Sbjct: 4697 cgccgcgaccgcgaccgcga 4678
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 11       cgccgcgaccgcgaccgcga 30
                ||||||||||||||||||||
Sbjct: 27096970 cgccgcgaccgcgaccgcga 27096989



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 11       cgccgcgaccgcgaccgcga 30
                ||||||||||||||||||||
Sbjct: 19180227 cgccgcgaccgcgaccgcga 19180246
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 5       ttccgccgccgcgaccgcgaccgc 28
               ||||||| ||||||||||||||||
Sbjct: 7050513 ttccgccaccgcgaccgcgaccgc 7050490
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 11       cgccgcgaccgcgaccgcga 30
                ||||||||||||||||||||
Sbjct: 25655277 cgccgcgaccgcgaccgcga 25655296
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 508      cattagcttcctcccttaac 527
                ||||||||||||||||||||
Sbjct: 35952362 cattagcttcctcccttaac 35952343



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 7        ccgccgccgcgaccgcgaccgcgatggc 34
                |||||||||||| ||||| |||||||||
Sbjct: 35616328 ccgccgccgcgaacgcgaacgcgatggc 35616301
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 62      cgagcaccaccaccaccaac 81
               ||||||||||||||||||||
Sbjct: 5613858 cgagcaccaccaccaccaac 5613877
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 7        ccgccgccgcgaccgcgaccgcga 30
                ||||| ||||||||||||||||||
Sbjct: 29945711 ccgcccccgcgaccgcgaccgcga 29945688
to top
>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0480C01
          Length = 151100

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     ccgccgccgcgaccgcgaccgcga 30
             ||||| ||||||||||||||||||
Sbjct: 90269 ccgcccccgcgaccgcgaccgcga 90246
to top
>gb|AE004930.1| Pseudomonas aeruginosa PAO1, section 491 of 529 of the complete
            genome
          Length = 10385

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    ccgccgccgcgaccgcgacc 26
            ||||||||||||||||||||
Sbjct: 3109 ccgccgccgcgaccgcgacc 3090
to top
>gb|AC126915.2| Homo sapiens chromosome 5 clone RP11-21I4, complete sequence
          Length = 144199

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    caccaccaccaaccgcagcc 88
             ||||||||||||||||||||
Sbjct: 67873 caccaccaccaaccgcagcc 67854
to top
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete
             sequence
          Length = 145290

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 7     ccgccgccgcgaccgcgaccgcgatggc 34
             |||||||||||| ||||| |||||||||
Sbjct: 59219 ccgccgccgcgaacgcgaacgcgatggc 59192
to top
>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0594D10
          Length = 143200

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     cgccgcgaccgcgaccgcga 30
              ||||||||||||||||||||
Sbjct: 109250 cgccgcgaccgcgaccgcga 109269
to top
>gb|DQ163913.1| Bacteriophage PA73, complete genome
          Length = 42999

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     gccgccgcgaccgcgaccgc 28
             ||||||||||||||||||||
Sbjct: 42615 gccgccgcgaccgcgaccgc 42596
to top
>gb|AY522343.1| Emericella nidulans HbrB gene, complete cds
          Length = 2544

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 11  cgccgcgaccgcgaccgcga 30
           ||||||||||||||||||||
Sbjct: 166 cgccgcgaccgcgaccgcga 185
to top
>gb|AE005037.1| Halobacterium sp. NRC-1 section 68 of 170 of the complete genome
          Length = 13508

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 7    ccgccgccgcgaccgcgaccgcga 30
            ||||||||||| ||||||||||||
Sbjct: 6332 ccgccgccgcggccgcgaccgcga 6309
to top
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    cgagcaccaccaccaccaac 81
             ||||||||||||||||||||
Sbjct: 41594 cgagcaccaccaccaccaac 41613
to top
>emb|X14694.1|PAARCA Pseudomonas aeruginosa arcA gene for arginine deiminase (EC 3.5.3.6)
          Length = 1366

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    ccgccgccgcgaccgcgacc 26
            ||||||||||||||||||||
Sbjct: 1238 ccgccgccgcgaccgcgacc 1219
to top
>dbj|AK109628.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-C02, full
           insert sequence
          Length = 2185

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 11  cgccgcgaccgcgaccgcga 30
           ||||||||||||||||||||
Sbjct: 241 cgccgcgaccgcgaccgcga 260
to top
>dbj|AK102069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082G06,
          full insert sequence
          Length = 1756

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 7  ccgccgccgcgaccgcgaccgcgatggc 34
          |||||||||||| ||||| |||||||||
Sbjct: 61 ccgccgccgcgaacgcgaacgcgatggc 88
to top
>dbj|AK100683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113M05, full
           insert sequence
          Length = 2206

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  cgagcaccaccaccaccaac 81
           ||||||||||||||||||||
Sbjct: 576 cgagcaccaccaccaccaac 557
to top
>dbj|AK067916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123P07, full
           insert sequence
          Length = 1762

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  cgagcaccaccaccaccaac 81
           ||||||||||||||||||||
Sbjct: 509 cgagcaccaccaccaccaac 490
to top
>emb|BX664607.21| Zebrafish DNA sequence from clone CH211-132B12 in linkage group 18,
             complete sequence
          Length = 179328

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   ccagctatgcatagacaaca 442
             ||||||||||||||||||||
Sbjct: 17099 ccagctatgcatagacaaca 17118
to top
>gb|AY108602.1| Zea mays PCO119028 mRNA sequence
          Length = 496

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 11  cgccgcgaccgcgaccgcga 30
           ||||||||||||||||||||
Sbjct: 221 cgccgcgaccgcgaccgcga 202
to top
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 11      cgccgcgaccgcgaccgcga 30
               ||||||||||||||||||||
Sbjct: 2509041 cgccgcgaccgcgaccgcga 2509060
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 5       ttccgccgccgcgaccgcgaccgc 28
               ||||||| ||||||||||||||||
Sbjct: 7053800 ttccgccaccgcgaccgcgaccgc 7053777
to top
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
              complete sequence
          Length = 151936

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     cgccgcgaccgcgaccgcga 30
              ||||||||||||||||||||
Sbjct: 113748 cgccgcgaccgcgaccgcga 113767
to top
>gb|AC101869.13| Mus musculus chromosome 1, clone RP23-348D4, complete sequence
          Length = 206095

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    caacacttacaacagccagc 457
              ||||||||||||||||||||
Sbjct: 131203 caacacttacaacagccagc 131222
to top
>gb|U06233.1|HSU06233 Human POU domain protein (Brn-3b) mRNA, complete cds
          Length = 3110

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  caccaccaccaccaaccgca 85
           ||||||||||||||||||||
Sbjct: 750 caccaccaccaccaaccgca 769


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,442,184
Number of Sequences: 3902068
Number of extensions: 4442184
Number of successful extensions: 214122
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 211948
Number of HSP's gapped (non-prelim): 2171
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top