ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart42a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY445161.1| Anabaena circinalis clone FP170 unknown DNA sequence 38 1.5
2gb|CP000249.1| Frankia sp. CcI3, complete genome 38 1.5
3ref|XM_314071.2| Anopheles gambiae str. PEST ENSANGP00000015662 ... 38 1.5
4emb|CR655581.2|CNS0F4TF Tetraodon nigroviridis full-length cDNA 36 5.7
5emb|AJ879085.1| Murraya paniculata ITS1 (partial), 5.8S rRNA gen... 36 5.7
6dbj|AP008980.1| Terrabacter sp. DBF63 plasmid pDBF1 genes, compl... 36 5.7
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 36 5.7
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 36 5.7
9emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb... 36 5.7

>gb|AY445161.1| Anabaena circinalis clone FP170 unknown DNA sequence
          Length = 399

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 20  gaacgcgctgctgcaatgcgggg 42
           ||||| |||||||||||||||||
Sbjct: 225 gaacgtgctgctgcaatgcgggg 203



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 17      gacgaacgcgctgctgcaa 35
               |||||||||||||||||||
Sbjct: 3499929 gacgaacgcgctgctgcaa 3499947



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>ref|XM_314071.2| Anopheles gambiae str. PEST ENSANGP00000015662 (ENSANGG00000013173),
            partial mRNA
          Length = 8157

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 16   ggacgaacgcgctgctgca 34
            |||||||||||||||||||
Sbjct: 6410 ggacgaacgcgctgctgca 6428



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>emb|CR655581.2|CNS0F4TF Tetraodon nigroviridis full-length cDNA
          Length = 1619

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                      
Query: 8    gggaggggggacgaacgcgctgctgc 33
            |||| ||||| |||||||||||||||
Sbjct: 1209 gggacggggggcgaacgcgctgctgc 1234



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>emb|AJ879085.1| Murraya paniculata ITS1 (partial), 5.8S rRNA gene and ITS2
          (partial)
          Length = 683

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 3  gcggcgggaggggggacg 20
          ||||||||||||||||||
Sbjct: 72 gcggcgggaggggggacg 89



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>dbj|AP008980.1| Terrabacter sp. DBF63 plasmid pDBF1 genes, complete and partial cds
          Length = 70631

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 5    ggcgggaggggggacgaa 22
            ||||||||||||||||||
Sbjct: 4352 ggcgggaggggggacgaa 4335



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 19      cgaacgcgctgctgcaat 36
               ||||||||||||||||||
Sbjct: 5717340 cgaacgcgctgctgcaat 5717357



 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 19      cgaacgcgctgctgcaat 36
               ||||||||||||||||||
Sbjct: 5716459 cgaacgcgctgctgcaat 5716476



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 19      cgaacgcgctgctgcaat 36
               ||||||||||||||||||
Sbjct: 5717333 cgaacgcgctgctgcaat 5717350



 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 19      cgaacgcgctgctgcaat 36
               ||||||||||||||||||
Sbjct: 5716452 cgaacgcgctgctgcaat 5716469



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>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 159056

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 19    cgaacgcgctgctgcaat 36
             ||||||||||||||||||
Sbjct: 71863 cgaacgcgctgctgcaat 71880



 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 19    cgaacgcgctgctgcaat 36
             ||||||||||||||||||
Sbjct: 70982 cgaacgcgctgctgcaat 70999


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 261,634
Number of Sequences: 3902068
Number of extensions: 261634
Number of successful extensions: 57413
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57208
Number of HSP's gapped (non-prelim): 205
length of query: 46
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 26
effective length of database: 17,155,003,908
effective search space: 446030101608
effective search space used: 446030101608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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