ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart42a07 |
|---|---|
| Clone Library Name | barley_pub |
>TYRP_SHIFL (P0AAD5) Tyrosine-specific transport protein (Tyrosine permease)| Length = 403 Score = 43.5 bits (101), Expect = 5e-04 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 4/97 (4%) Frame = +3 Query: 150 VGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRYRDLGVHA 329 +GAG+L++P A A +G+ ++ L+ W + YT LL+E+++ VP D G+ Sbjct: 17 IGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-------DTGLGT 69 Query: 330 LGP----RLGLWVVVPQQLIVQLGCDVVYMVTGGNCL 428 L R G W+ + + Y+ G L Sbjct: 70 LAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELL 106
>TYRP_ECOLI (P0AAD4) Tyrosine-specific transport protein (Tyrosine permease)| Length = 403 Score = 43.5 bits (101), Expect = 5e-04 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 4/97 (4%) Frame = +3 Query: 150 VGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRYRDLGVHA 329 +GAG+L++P A A +G+ ++ L+ W + YT LL+E+++ VP D G+ Sbjct: 17 IGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-------DTGLGT 69 Query: 330 LGP----RLGLWVVVPQQLIVQLGCDVVYMVTGGNCL 428 L R G W+ + + Y+ G L Sbjct: 70 LAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELL 106
>YAN9_SCHPO (Q10074) Hypothetical protein C3H1.09c in chromosome I| Length = 656 Score = 42.4 bits (98), Expect = 0.001 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 8/154 (5%) Frame = +3 Query: 144 AMVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRYRDLGV 323 + VG GVL LP A G LL+ ++ LLI+ VPG + D+G Sbjct: 287 SFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLLLIQTRMKVPG----SFGDIGG 342 Query: 324 HALGPRLGLWVVVPQQLIVQLGCDVVYMVTGGNCLQKFAESVCPSCTRL----HQSYWIC 491 GP + + ++ ++ Q+G Y+ F S +C ++ H+ Y + Sbjct: 343 TLYGPHM-RFAILASIVVSQIGFSSAYI--------SFVASTLQACVKVISTTHREYHLA 393 Query: 492 IFGSSQFL----LSQLRDLNSITAISLAAAVMSL 581 +F QFL LS +R ++ ++A +L A V L Sbjct: 394 VFIFIQFLVFVPLSLVRKISKLSATALIADVFIL 427
>AVT3_YEAST (P36062) Vacuolar amino acid transporter 3| Length = 692 Score = 40.0 bits (92), Expect = 0.005 Identities = 30/101 (29%), Positives = 45/101 (44%) Frame = +3 Query: 144 AMVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRYRDLGV 323 + VG GVL LP A + GWG + LL L + + L V D Y D+G Sbjct: 309 SFVGTGVLFLPKAFHNGGWGFSALCLL---SCALISYGCFVSLITTKDKVGVDGYGDMGR 365 Query: 324 HALGPRLGLWVVVPQQLIVQLGCDVVYMVTGGNCLQKFAES 446 GP++ + ++ + Q+G Y V LQ F+E+ Sbjct: 366 ILYGPKM-KFAILSSIALSQIGFSAAYTVFTATNLQVFSEN 405
>TYRPA_HAEIN (P44727) Tyrosine-specific transport protein 1 (Tyrosine permease| 1) Length = 400 Score = 39.3 bits (90), Expect = 0.009 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 4/100 (4%) Frame = +3 Query: 147 MVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRYRDLGVH 326 M+GAG+L++P A +G+G +V LL W + ++ L +EL++ D G+ Sbjct: 15 MIGAGMLAMPLTSAGIGFGFTLVLLLGLWALLTFSALLFVELYQTAES-------DAGIG 67 Query: 327 ALGP----RLGLWVVVPQQLIVQLGCDVVYMVTGGNCLQK 434 L + G ++ LI+ L + ++GG L K Sbjct: 68 TLAEQYFGKTGR-IIATAVLIIFLYALIAAYISGGGSLLK 106
>AVT1_YEAST (P47082) Vacuolar amino acid transporter 1| Length = 602 Score = 38.5 bits (88), Expect = 0.015 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = +3 Query: 129 FHNVTAMVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRY 308 F+++ ++G G+L+LP + + GW G+ L + T T LL + P Y Sbjct: 215 FNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLDTDP--TLISY 272 Query: 309 RDLGVHALGPR 341 DLG A G + Sbjct: 273 ADLGYAAFGTK 283
>VIAAT_RAT (O35458) Vesicular inhibitory amino acid transporter (GABA and| glycine transporter) (Vesicular GABA transporter) (rGVAT) (Solute carrier family 32 member 1) Length = 525 Score = 36.6 bits (83), Expect = 0.059 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Frame = +3 Query: 117 WYVTFHNVTAMVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIE-LHECVPGV 293 W ++ A+ G VL LPYA+ H G+ G+ ++ + + YT ++LI L+E Sbjct: 119 WEAGWNVTNAIQGMFVLGLPYAILHGGY-LGLFLIIFAAVVCCYTGKILIACLYEENEDG 177 Query: 294 RFDRYRDLGVHALG-------PRLGLWVVVPQQLIVQLGCDVVYMVTGGNCLQKFAESVC 452 R RD V P LG VV Q+I + ++Y+V GN + + Sbjct: 178 EVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLP 237 Query: 453 PSCTRLHQSYWICIFGSSQFLLSQLRDLNSITAISL 560 S Q W I + + L++L +++ SL Sbjct: 238 VS-----QKSWSIIATAVLLPCAFLKNLKAVSKFSL 268
>VIAAT_MOUSE (O35633) Vesicular inhibitory amino acid transporter (GABA and| glycine transporter) (Vesicular GABA transporter) (mVIAAT) (mVGAT) (Solute carrier family 32 member 1) Length = 525 Score = 36.6 bits (83), Expect = 0.059 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Frame = +3 Query: 117 WYVTFHNVTAMVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIE-LHECVPGV 293 W ++ A+ G VL LPYA+ H G+ G+ ++ + + YT ++LI L+E Sbjct: 119 WEAGWNVTNAIQGMFVLGLPYAILHGGY-LGLFLIIFAAVVCCYTGKILIACLYEENEDG 177 Query: 294 RFDRYRDLGVHALG-------PRLGLWVVVPQQLIVQLGCDVVYMVTGGNCLQKFAESVC 452 R RD V P LG VV Q+I + ++Y+V GN + + Sbjct: 178 EVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLP 237 Query: 453 PSCTRLHQSYWICIFGSSQFLLSQLRDLNSITAISL 560 S Q W I + + L++L +++ SL Sbjct: 238 VS-----QKSWSIIATAVLLPCAFLKNLKAVSKFSL 268
>VIAAT_MACFA (Q95KE2) Vesicular inhibitory amino acid transporter (GABA and| glycine transporter) (Vesicular GABA transporter) (Solute carrier family 32 member 1) Length = 525 Score = 36.6 bits (83), Expect = 0.059 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Frame = +3 Query: 117 WYVTFHNVTAMVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIE-LHECVPGV 293 W ++ A+ G VL LPYA+ H G+ G+ ++ + + YT ++LI L+E Sbjct: 119 WEAGWNVTNAIQGMFVLGLPYAILHGGY-LGLFLIIFAAVVCCYTGKILIACLYEENEDG 177 Query: 294 RFDRYRDLGVHALG-------PRLGLWVVVPQQLIVQLGCDVVYMVTGGNCLQKFAESVC 452 R RD V P LG VV Q+I + ++Y+V GN + + Sbjct: 178 EVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLP 237 Query: 453 PSCTRLHQSYWICIFGSSQFLLSQLRDLNSITAISL 560 S Q W I + + L++L +++ SL Sbjct: 238 VS-----QKSWSIIATAVLLPCAFLKNLKAVSKFSL 268
>VIAAT_HUMAN (Q9H598) Vesicular inhibitory amino acid transporter (GABA and| glycine transporter) (Vesicular GABA transporter) (hVIAAT) (Solute carrier family 32 member 1) Length = 525 Score = 36.6 bits (83), Expect = 0.059 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%) Frame = +3 Query: 117 WYVTFHNVTAMVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIE-LHECVPGV 293 W ++ A+ G VL LPYA+ H G+ G+ ++ + + YT ++LI L+E Sbjct: 119 WEAGWNVTNAIQGMFVLGLPYAILHGGY-LGLFLIIFAAVVCCYTGKILIACLYEENEDG 177 Query: 294 RFDRYRDLGVHALG-------PRLGLWVVVPQQLIVQLGCDVVYMVTGGNCLQKFAESVC 452 R RD V P LG VV Q+I + ++Y+V GN + + Sbjct: 178 EVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLP 237 Query: 453 PSCTRLHQSYWICIFGSSQFLLSQLRDLNSITAISL 560 S Q W I + + L++L +++ SL Sbjct: 238 VS-----QKSWSIIATAVLLPCAFLKNLKAVSKFSL 268
>AVT6_YEAST (P40074) Vacuolar amino acid transporter 6| Length = 448 Score = 36.2 bits (82), Expect = 0.077 Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 4/149 (2%) Frame = +3 Query: 153 GAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRYRDLGVHAL 332 GAG+L++PYA G PG++ +++ + +L + + + VP R + L + Sbjct: 18 GAGILAMPYAFKPFGLIPGVIMIVLCGACAMQSLFIQARVAKYVPQGRAS-FSAL-TRLI 75 Query: 333 GPRLGLWVVVPQQLIVQ-LGCDVVYMVTGGNCLQKFAESVCPSCTRLHQSYWICIFGSSQ 509 P LG +V + ++ G V YM+ G+ + + + L+++ I + Sbjct: 76 NPNLG--IVFDLAIAIKCFGVGVSYMIVVGDLMPQIMSVWTRNAWLLNRNVQISLI--ML 131 Query: 510 FL---LSQLRDLNSITAISLAAAVMSLSY 587 F LS L+ LNS+ S+ A+ S++Y Sbjct: 132 FFVAPLSFLKKLNSLRYASM-VAISSVAY 159
>YSPK_CAEEL (Q19425) Hypothetical protein F13H10.3 in chromosome IV| Length = 615 Score = 35.8 bits (81), Expect = 0.10 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Frame = +3 Query: 147 MVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFD----RYRD 314 M+G +L++P+A+ G GI+ +L I YT ++IE + + + D + D Sbjct: 176 MMGTSLLAMPWALQQAGLVLGIIIMLSMAAICFYTAYIVIESPKRLQDLSVDPLLAEFSD 235 Query: 315 LGVHALGPRLGLWVVVPQQLIVQLGCDVVYMVTGGNCL 428 + G R+G + V + V +G +VY V N L Sbjct: 236 VCKSLFG-RIGEYCAVVFSVCVLIGGVIVYWVLMSNFL 272
>TYRPB_HAEIN (P44747) Tyrosine-specific transport protein 2 (Tyrosine permease| 2) Length = 406 Score = 35.0 bits (79), Expect = 0.17 Identities = 27/150 (18%), Positives = 63/150 (42%), Gaps = 4/150 (2%) Frame = +3 Query: 150 VGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRYRDLGVHA 329 +GAG+L++P A +G+G ++ L+ W + +Y+ L +E+++ + D GV Sbjct: 18 IGAGMLAMPLTSAGMGFGYTLLLLVGLWALLVYSGLLFVEVYQTADQL------DDGVAT 71 Query: 330 LGPRL----GLWVVVPQQLIVQLGCDVVYMVTGGNCLQKFAESVCPSCTRLHQSYWICIF 497 L + G L++ Y+ GG+ L + L + I Sbjct: 72 LAEKYFGVPGRIFATLSLLVLLYALSAAYITGGGSLLSGLPTAFGMEAMSLKTAIIIFTV 131 Query: 498 GSSQFLLSQLRDLNSITAISLAAAVMSLSY 587 F++ + ++ +T + +++ ++ Sbjct: 132 VLGSFVVVGTKGVDGLTRVLFIGKLIAFAF 161
>S36A1_MOUSE (Q8K4D3) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 475 Score = 34.7 bits (78), Expect = 0.22 Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 27/202 (13%) Frame = +3 Query: 48 SPSVVLPKVVDG--EKEGTARRAKWWYVTFHNVTAMVGAGVLSLPYAMAHLGWGPGIVAL 221 SPS L G ++ G W+ H + +G G+L LP A+ + G G ++L Sbjct: 24 SPSEGLGSFSPGSYQRLGENSSMTWFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSL 83 Query: 222 LVSWCITLYTLRLLIEL--HECVP-GVRFDRYRDLGVHALGPRLGLWV---------VVP 365 LV + ++ + +L++ H C F Y D ++ L WV +V Sbjct: 84 LVIGIVAVHCMGILVKCAHHLCRRLNKPFLDYGDTVMYGLECSPSTWVRNHSHWGRRIVD 143 Query: 366 QQLIV-QLGCDVVYMVTGGNCLQKFAESVCPSCTRLHQS------------YWICIFGSS 506 LIV QLG VY V + ++ E+ + T + + ++ F Sbjct: 144 FFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTTNCNNNVTVIPTPTMDSRLYMLSFLPF 203 Query: 507 QFLLSQLRDLNSITAISLAAAV 572 LLS +R+L ++ SL A + Sbjct: 204 LVLLSFIRNLRVLSIFSLLANI 225
>S36A1_RAT (Q924A5) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) (Lysosomal amino acid transporter 1) (LYAAT-1) (Neutral amino acid/proton symporter) Length = 475 Score = 34.3 bits (77), Expect = 0.29 Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 27/202 (13%) Frame = +3 Query: 48 SPSVVLPKVVDG--EKEGTARRAKWWYVTFHNVTAMVGAGVLSLPYAMAHLGWGPGIVAL 221 SPS L G ++ G W+ H + +G G+L LP A+ + G G ++L Sbjct: 24 SPSEGLGSFSPGSYQRLGENSSMTWFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSL 83 Query: 222 LVSWCITLYTLRLLIEL--HECVP-GVRFDRYRDLGVHALGPRLGLWV---------VVP 365 LV + ++ + +L++ H C F Y D ++ L W+ +V Sbjct: 84 LVIGIVAVHCMGILVKCAHHLCRRLNKPFLDYGDTVMYGLECSPSTWIRNHSHWGRRIVD 143 Query: 366 QQLIV-QLGCDVVYMVTGGNCLQKFAESVCPSCTRLHQS------------YWICIFGSS 506 L+V QLG VY V + ++ E+ + T + + ++ F Sbjct: 144 FFLVVTQLGFCCVYFVFLADNFKQVIEAANGTTTNCNNNETVILTPTMDSRLYMLTFLPF 203 Query: 507 QFLLSQLRDLNSITAISLAAAV 572 LLS +R+L ++ SL A + Sbjct: 204 LVLLSFIRNLRILSIFSLLANI 225
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 34.3 bits (77), Expect = 0.29 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%) Frame = -3 Query: 356 HPQAQ-------PRAERVHAQVAIPVEPHARHALVELDQQPQRVQRDAPRHQQRHYPWPP 198 HPQ Q P ++ HAQ + +P ++ ++ Q P Q P HQQ P+P Sbjct: 477 HPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPS 536 Query: 197 SQ 192 Q Sbjct: 537 QQ 538
>S38A3_RAT (Q9JHZ9) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 33.5 bits (75), Expect = 0.50 Identities = 23/69 (33%), Positives = 37/69 (53%) Frame = +3 Query: 129 FHNVTAMVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRY 308 F+ A++G+G+L L YAMA+ G + L ++ Y++ LL++ V G+R Y Sbjct: 72 FNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIV-GIR--AY 128 Query: 309 RDLGVHALG 335 LG A G Sbjct: 129 EQLGYRAFG 137
>S38A3_HUMAN (Q99624) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 33.5 bits (75), Expect = 0.50 Identities = 23/69 (33%), Positives = 37/69 (53%) Frame = +3 Query: 129 FHNVTAMVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRY 308 F+ A++G+G+L L YAMA+ G + L ++ Y++ LL++ V G+R Y Sbjct: 73 FNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLK-SSGVVGIR--AY 129 Query: 309 RDLGVHALG 335 LG A G Sbjct: 130 EQLGYRAFG 138
>MTR_NEUCR (P38680) N amino acid transport system protein (Methyltryptophan| resistance protein) Length = 470 Score = 33.5 bits (75), Expect = 0.50 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Frame = +3 Query: 72 VVDGEKEGTARRAK-----WWYVTFHNVTAMVGAGVLSLPYAMAHLGWGPGIVALLVSWC 236 ++D E E AK W +T + + G LSLP A A LG PG++ + Sbjct: 36 IMDKEPEAQEGHAKFHRLGWKRLTVVLIVEAIALGSLSLPGAFATLGMVPGVILSVGMGL 95 Query: 237 ITLYTLRLL 263 I +YT ++ Sbjct: 96 ICIYTAHVI 104
>S38A3_MOUSE (Q9DCP2) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) (mNAT) Length = 505 Score = 33.5 bits (75), Expect = 0.50 Identities = 23/69 (33%), Positives = 37/69 (53%) Frame = +3 Query: 129 FHNVTAMVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRY 308 F+ A++G+G+L L YAMA+ G + L ++ Y++ LL++ V G+R Y Sbjct: 72 FNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIV-GIR--AY 128 Query: 309 RDLGVHALG 335 LG A G Sbjct: 129 EQLGYRAFG 137
>AVT4_YEAST (P50944) Vacuolar amino acid transporter 4| Length = 713 Score = 33.1 bits (74), Expect = 0.65 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 1/142 (0%) Frame = +3 Query: 144 AMVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRYRDLGV 323 + +G GVL LP A H G V++L + I Y ++ + GV + D+G+ Sbjct: 309 SFIGTGVLFLPNAF-HNGGLFFSVSMLAFFGIYSYWCYYILVQAKSSCGV--SSFGDIGL 365 Query: 324 HALGPRLGLWVVVPQQLIVQLGCDVVYMVTGGNCLQKFAESVCPSCTRLHQSYWICIFGS 503 GP + + +++ +I Q+G YM+ LQ F ++V L SY + +F + Sbjct: 366 KLYGPWMRI-IILFSLVITQVGFSGAYMIFTAKNLQAFLDNVF-HVGVLPLSY-LMVFQT 422 Query: 504 SQFL-LSQLRDLNSITAISLAA 566 F+ LS +R+++ ++ SL A Sbjct: 423 IIFIPLSFIRNISKLSLPSLLA 444
>AVT5_YEAST (P38176) Vacuolar amino acid transporter 5| Length = 509 Score = 32.7 bits (73), Expect = 0.85 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Frame = +3 Query: 153 GAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRYRDLGVHAL 332 GAGVL++P+A G PG++ L +L L L + + VP + L + Sbjct: 68 GAGVLAMPFAFKPFGLMPGLITLTFCGICSLCGLLLQTRIAKYVPKSENASFAKL-TQLI 126 Query: 333 GPRLGLWVVVPQQLIVQ-LGCDVVYMVTGGNCLQKFAESV 449 P + VV + V+ G V Y++ G+ + + +S+ Sbjct: 127 NPSIS--VVFDFAIAVKCFGVGVSYLIIVGDLVPQIVQSI 164
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 32.3 bits (72), Expect = 1.1 Identities = 21/70 (30%), Positives = 25/70 (35%) Frame = -3 Query: 323 HAQVAIPVEPHARHALVELDQQPQRVQRDAPRHQQRHYPWPPSQVSHGVGQAEHAGADHR 144 H Q+ PH H L Q PQR Q AP QQ PP Q +H+ Sbjct: 373 HPQMHPQPSPHTPHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQHPPPHQHIQHHPNHQ 432 Query: 143 GDIVERHVPP 114 + PP Sbjct: 433 HQTLAHQPPP 442
>AVT2_YEAST (P39981) Vacuolar amino acid transporter 2| Length = 480 Score = 32.3 bits (72), Expect = 1.1 Identities = 31/150 (20%), Positives = 71/150 (47%), Gaps = 7/150 (4%) Frame = +3 Query: 144 AMVGAGVLSLPYAMAHLGWGPGIVALLVSWCITLYTLRLLIELHECVPGVRFDRYRDLGV 323 +++GAG+++ P+A+ + G G+++ + I +TLRL++ ++ + G R Y+ Sbjct: 79 SILGAGIITQPFAIKNAGILGGLLSYVALGFIVDWTLRLIV-INLTLAGKR--TYQGTVE 135 Query: 324 HALGPRLGLWVVVPQQLIVQLGCDVVYMVTGGNCLQKFAESVCPSCTRLHQSYW------ 485 H +G + L ++ L GC + Y + G+ + ++ S + +W Sbjct: 136 HVMGKKGKLLILFTNGLFAFGGC-IGYCIIIGDTIPHVLRAIF-SQNDGNVHFWLRRNVI 193 Query: 486 -ICIFGSSQFLLSQLRDLNSITAISLAAAV 572 + + F LS R++ +++ S A + Sbjct: 194 IVMVTTFISFPLSMKRNIEALSKASFLAVI 223
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 32.0 bits (71), Expect = 1.4 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 8/73 (10%) Frame = -3 Query: 386 ELHDELLRHHHPQAQP--------RAERVHAQVAIPVEPHARHALVELDQQPQRVQRDAP 231 +LH + H H Q QP + ++VH +P +H+ Q PQ Q AP Sbjct: 1922 QLHQQ---HQHQQQQPQQAQQTQQQRQQVHPAPQLPQAQPPQHSHQAQAQHPQTQQAQAP 1978 Query: 230 RHQQRHYPWPPSQ 192 + Q + P PP Q Sbjct: 1979 QAQAQQ-PQPPQQ 1990
>AL2SE_MOUSE (Q3TY65) Amyotrophic lateral sclerosis 2 chromosomal region| candidate gene 15 protein homolog (Ica69-related protein) Length = 431 Score = 31.2 bits (69), Expect = 2.5 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 391 QPSCTMSCCGTTTHRPSRGPSACTPRSRY 305 QP+C C G T+ PS GP + T S++ Sbjct: 348 QPACGSPCTGLTSQEPSVGPGSLTSSSQF 376
>AMFR1_HUMAN (P26442) Autocrine motility factor receptor precursor, isoform 1| (AMF receptor) Length = 323 Score = 30.4 bits (67), Expect = 4.2 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 4/40 (10%) Frame = +1 Query: 79 TVRRRARPAVPNGGT*RSTMSPRW----SAPACSACPTPW 186 T+RRR A NGG RS+ P SA +C+ CPT W Sbjct: 48 TLRRRMLAAARNGGF-RSSRPPSAPLPSSAASCALCPTDW 86
>BARH2_DROME (Q24256) Homeobox protein B-H2 (Homeobox protein BarH2)| Length = 645 Score = 30.0 bits (66), Expect = 5.5 Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 10/76 (13%) Frame = -3 Query: 380 HDELLRHHHPQAQPRAERVHAQVAIPVEPHARHALVELDQQPQRVQRDAPRHQQR----- 216 H + + HH Q + ++ H Q A+ + L+ +++ +R +R+ +++R Sbjct: 110 HHQQQQQHHHHQQQQQQQQHQQAALQQYIVQQQQLLRFERERER-EREREHYRERHSPPG 168 Query: 215 -----HYPWPPSQVSH 183 H+P PP ++H Sbjct: 169 NNPYAHHPMPPHLLAH 184
>KNIR_DROVI (Q24753) Zygotic gap protein knirps| Length = 481 Score = 30.0 bits (66), Expect = 5.5 Identities = 17/42 (40%), Positives = 19/42 (45%) Frame = -3 Query: 263 QQPQRVQRDAPRHQQRHYPWPPSQVSHGVGQAEHAGADHRGD 138 QQ Q+ Q + QQRH PP G EH GA H D Sbjct: 134 QQQQQQQHQHQQQQQRHPHLPPLLGYTGYHLPEHFGARHPAD 175
>KRA49_HUMAN (Q9BYQ8) Keratin-associated protein 4-9 (Keratin-associated protein| 4.9) (Ultrahigh sulfur keratin-associated protein 4.9) (Fragment) Length = 191 Score = 30.0 bits (66), Expect = 5.5 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = -1 Query: 400 TTSQPSCTMS-CCGTTTHRPSRGPSAC 323 T S+PSC + CC TT +RPS S+C Sbjct: 44 TCSRPSCCQTTCCRTTCYRPSCCVSSC 70
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.0 bits (66), Expect = 5.5 Identities = 36/134 (26%), Positives = 47/134 (35%), Gaps = 8/134 (5%) Frame = -1 Query: 418 PPVTM*TTSQPSCTMSCCGTTTHRP-----SRGPSACTPRSRYRSNRTPGTHXXXXXXXX 254 PP T TT P+ T S TTT P + P TP S + +P T Sbjct: 1643 PPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPT 1702 Query: 253 XXXSVMHHDT---SNATIPGPHPR*AMA*GRLSTPAPTIAVTLWNVTYHHLARRAVPSFS 83 S T S+ T P P P ++TP+PT + P + Sbjct: 1703 TTPSSPITTTTTPSSTTTPSPPPT------TMTTPSPTTTPS--------------PPTT 1742 Query: 82 PSTTLGRTTEGEPM 41 TTL TT P+ Sbjct: 1743 TMTTLPPTTTSSPL 1756
>KRA99_HUMAN (Q9BYP9) Keratin-associated protein 9-9 (Keratin-associated protein| 9.9) (Ultrahigh sulfur keratin-associated protein 9.9) Length = 154 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = -1 Query: 400 TTSQPSCTMSCCGTTTHRPSRG-PSACTP 317 T QP+C SCCG T+ S G S+C P Sbjct: 65 TCCQPTCLSSCCGQTSCGSSCGQSSSCAP 93
>KR410_HUMAN (Q9BYQ7) Keratin-associated protein 4-10 (Keratin-associated| protein 4.10) (Ultrahigh sulfur keratin-associated protein 4.10) Length = 127 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 6/37 (16%) Frame = -1 Query: 415 PVTM*TTSQPSCTMS------CCGTTTHRPSRGPSAC 323 PV TT +PSC +S CC TT RPS G S+C Sbjct: 67 PVCCQTTCRPSCGVSSCCRPLCCQTTC-RPSCGVSSC 102
>VID21_ASHGO (Q756L0) Chromatin modification-related protein VID21| Length = 957 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Frame = -3 Query: 377 DELLRHHHPQAQPRAERVHAQVAIPVEPHARHALVELDQQPQRVQRDA--PRHQQRHYPW 204 DE LR + +R+H L +L QQ QRVQ+D R Q R P Sbjct: 741 DETLRREGQMRRAAKQRIH--------------LAQLQQQQQRVQQDVVQQRPQSRSQPD 786 Query: 203 PP 198 PP Sbjct: 787 PP 788
>ZAN_MOUSE (O88799) Zonadhesin precursor| Length = 5376 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Frame = -1 Query: 472 CSRVQLGHTDSANFCRQLPPVTM*TTSQPSCTMSC------CGTTTHRPSRGPSAC 323 C ++ G ++ AN Q P + T P C SC CG +T ++ PSAC Sbjct: 2563 CQDIEDGTSNCANITLQCPAHSSFTNCLPPCQPSCSDPEGHCGGST---TKAPSAC 2615
>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)| (KP) Length = 634 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -3 Query: 380 HDELLRHHHPQAQPRAERVHAQVAIPVEPHARHALVELDQQPQRVQ 243 H HHH + +A +VH QV + H H QPQ++Q Sbjct: 79 HQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHHHQLQPQQLQ 124
>KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precursor (KAHRP)| (HRPI) (Fragment) Length = 473 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -3 Query: 380 HDELLRHHHPQAQPRAERVHAQVAIPVEPHARHALVELDQQPQRVQ 243 H HHH + +A +VH QV + H H QPQ++Q Sbjct: 79 HQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHHHQLQPQQLQ 124
>PTC1_MOUSE (Q61115) Protein patched homolog 1 (PTC1) (PTC)| Length = 1434 Score = 29.3 bits (64), Expect = 9.4 Identities = 18/72 (25%), Positives = 29/72 (40%) Frame = -3 Query: 359 HHPQAQPRAERVHAQVAIPVEPHARHALVELDQQPQRVQRDAPRHQQRHYPWPPSQVSHG 180 H P PR + PH + +Q Q+ +RD PR R P+ P + + Sbjct: 1262 HQPPLTPRQQ-----------PHLDSGSLSPGRQGQQPRRDPPREGLRPPPYRPRRDAFE 1310 Query: 179 VGQAEHAGADHR 144 + H+G +R Sbjct: 1311 ISTEGHSGPSNR 1322
>MARH4_HUMAN (Q9P2E8) Membrane-associated RING finger protein 4| (Membrane-associated RING-CH protein IV) (MARCH-IV) (RING finger protein 174) Length = 410 Score = 29.3 bits (64), Expect = 9.4 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Frame = +3 Query: 369 QLIVQLGCDVVYMVTGGNCLQKF-AESVCPSCTRLHQSYWICIFGSSQFLLSQLRDLNSI 545 +L+ CD T CL K+ +E C SC + Y + + L Q L I Sbjct: 174 ELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVI 233 Query: 546 TAISLAAAVMSLSY--STISW 602 + +AAA++ + ++ISW Sbjct: 234 EKVQVAAAILGSLFLIASISW 254
>KCNN3_HUMAN (Q9UGI6) Small conductance calcium-activated potassium channel| protein 3 (SK3) (SKCa3) Length = 736 Score = 29.3 bits (64), Expect = 9.4 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Frame = -3 Query: 350 QAQPRAERVHAQVAIPVEPHARHALVELDQQPQRVQRDAPRHQQRHYP-WPPSQVSHGVG 174 Q QP A P+ P + +L QQ Q+ Q+ + QQ+ P P SQ++ Sbjct: 39 QQQPPPPAPPAAPQQPLGPSLQPQPPQLQQQQQQQQQQQQQQQQQQQPPHPLSQLAQLQS 98 Query: 173 QAEHAGADHRGDIVERHVP 117 Q H G H R P Sbjct: 99 QPVHPGLLHSSPTAFRAPP 117
>Y389_CLOPE (P30818) Putative amino acid transporter CPE0389| Length = 481 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +3 Query: 138 VTAMVGAGVLSLPYAMAHLGWGPGIVALLVSWCIT 242 ++AM+G GV +LP MA A+L+SW IT Sbjct: 17 ISAMLGGGVYNLPQNMAQ---SASAGAILISWIIT 48
>ARCD_SHIFL (P0AAE7) Putative arginine/ornithine antiporter| Length = 460 Score = 29.3 bits (64), Expect = 9.4 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +3 Query: 138 VTAMVGAGVLSLPYAMAHLGWGPGIVALLVSWCIT 242 +++M+GAGV SLP MA + ALL+ W IT Sbjct: 15 LSSMLGAGVFSLPQNMAAVA---SPAALLIGWGIT 46
>ARCD_ECOLI (P0AAE5) Putative arginine/ornithine antiporter| Length = 460 Score = 29.3 bits (64), Expect = 9.4 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +3 Query: 138 VTAMVGAGVLSLPYAMAHLGWGPGIVALLVSWCIT 242 +++M+GAGV SLP MA + ALL+ W IT Sbjct: 15 LSSMLGAGVFSLPQNMAAVA---SPAALLIGWGIT 46
>ARCD_ECOL6 (P0AAE6) Putative arginine/ornithine antiporter| Length = 460 Score = 29.3 bits (64), Expect = 9.4 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +3 Query: 138 VTAMVGAGVLSLPYAMAHLGWGPGIVALLVSWCIT 242 +++M+GAGV SLP MA + ALL+ W IT Sbjct: 15 LSSMLGAGVFSLPQNMAAVA---SPAALLIGWGIT 46
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 29.3 bits (64), Expect = 9.4 Identities = 18/55 (32%), Positives = 22/55 (40%) Frame = -3 Query: 362 HHHPQAQPRAERVHAQVAIPVEPHARHALVELDQQPQRVQRDAPRHQQRHYPWPP 198 HHHPQ QP A +P +P PQ+ P QQ+ P PP Sbjct: 742 HHHPQMQP------APAPVPQQP---------PPPPQQPPPPPPPQQQQQQPPPP 781 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,513,015 Number of Sequences: 219361 Number of extensions: 1432268 Number of successful extensions: 5367 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 4926 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5310 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
