ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart42a07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472762.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1437 Score = 383 bits (193), Expect = e-103 Identities = 310/349 (88%) Strand = Plus / Plus Query: 102 cgccgtgccaaatggtggtacgtgacgttccacaatgtcaccgcgatggtcggcgccggc 161 ||||| || ||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct: 166 cgccgggcgaaatggtggtacgcgacgttccacagcgtcaccgccatggtcggcgccggc 225 Query: 162 gtgctcagcctgccctacgccatggctcacctgggatgggggccagggatagtggcgttg 221 ||||||||| |||| ||||||||||||||||| ||||||||||| |||| | |||| || Sbjct: 226 gtgctcagcttgccgtacgccatggctcacctaggatgggggccggggacggcggcgctg 285 Query: 222 ctggtgtcgtggtgcatcacgctgtacacgctgcggctgctgatcgagctccacgagtgc 281 ||||||||||| | || |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 286 gtggtgtcgtgggggatgacgctgtacacgctgcggctgctgatcgagctgcacgagtgc 345 Query: 282 gtgcctggcgtgcggttcgaccggtatcgcgacctgggcgtgcacgcgctcggcccgcgg 341 ||||| || ||||||||||||||||| |||||||| |||| ||||||||| |||||||| Sbjct: 346 gtgcccggggtgcggttcgaccggtaccgcgacctcggcgcgcacgcgctgggcccgcgc 405 Query: 342 ctgggcctgtgggtggtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggtc 401 ||||| | ||| | || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 ctggggccctggctcgtcgtgccgcagcagctcatcgtgcagctcggctgcgacgtggtg 465 Query: 402 tacatggtcaccggcggcaactgcctgcagaagttcgccgagtcggtgt 450 |||||||||| |||||| || ||||| |||||||||||||||||||| Sbjct: 466 tacatggtcatcggcgggaaatgcctcatgaagttcgccgagtcggtgt 514 Score = 161 bits (81), Expect = 3e-36 Identities = 123/137 (89%) Strand = Plus / Plus Query: 474 cagtcctactggatctgcatcttcggctcctcccagttcctgctctcccagctgcgcgac 533 ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| | | | Sbjct: 547 cagtcctactggatctgcatcttcggcgcctcccagttcctcctctcccagctccccagc 606 Query: 534 ctcaactccatcaccgccatctctctcgccgccgccgtcatgtccctcagctactccacc 593 ||| |||||||||||||| |||| ||||||||||||| ||||||| || ||||||| || Sbjct: 607 ctcgactccatcaccgccgtctccctcgccgccgccgccatgtccgtcggctactcgacg 666 Query: 594 atatcatgggcggcgtg 610 ||||||||||||||||| Sbjct: 667 atatcatgggcggcgtg 683
>emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1358B12, complete sequence Length = 131246 Score = 262 bits (132), Expect = 1e-66 Identities = 204/228 (89%) Strand = Plus / Minus Query: 223 tggtgtcgtggtgcatcacgctgtacacgctgcggctgctgatcgagctccacgagtgcg 282 ||||||||||| | || |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 70857 tggtgtcgtgggggatgacgctgtacacgctgcggctgctgatcgagctgcacgagtgcg 70798 Query: 283 tgcctggcgtgcggttcgaccggtatcgcgacctgggcgtgcacgcgctcggcccgcggc 342 |||| || ||||||||||||||||| |||||||| |||| ||||||||| |||||||| | Sbjct: 70797 tgcccggggtgcggttcgaccggtaccgcgacctcggcgcgcacgcgctgggcccgcgcc 70738 Query: 343 tgggcctgtgggtggtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggtct 402 |||| | ||| | || ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 70737 tggggccctggctcgtcgtgccgcagcagctcatcgtgcagctcggctgcgacgtggtgt 70678 Query: 403 acatggtcaccggcggcaactgcctgcagaagttcgccgagtcggtgt 450 ||||||||| |||||| || ||||| |||||||||||||||||||| Sbjct: 70677 acatggtcatcggcgggaaatgcctcatgaagttcgccgagtcggtgt 70630 Score = 161 bits (81), Expect = 3e-36 Identities = 123/137 (89%) Strand = Plus / Minus Query: 474 cagtcctactggatctgcatcttcggctcctcccagttcctgctctcccagctgcgcgac 533 ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| | | | Sbjct: 70597 cagtcctactggatctgcatcttcggcgcctcccagttcctcctctcccagctccccagc 70538 Query: 534 ctcaactccatcaccgccatctctctcgccgccgccgtcatgtccctcagctactccacc 593 ||| |||||||||||||| |||| ||||||||||||| ||||||| || ||||||| || Sbjct: 70537 ctcgactccatcaccgccgtctccctcgccgccgccgccatgtccgtcggctactcgacg 70478 Query: 594 atatcatgggcggcgtg 610 ||||||||||||||||| Sbjct: 70477 atatcatgggcggcgtg 70461 Score = 125 bits (63), Expect = 2e-25 Identities = 90/99 (90%) Strand = Plus / Minus Query: 102 cgccgtgccaaatggtggtacgtgacgttccacaatgtcaccgcgatggtcggcgccggc 161 ||||| || ||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct: 71073 cgccgggcgaaatggtggtacgcgacgttccacagcgtcaccgccatggtcggcgccggc 71014 Query: 162 gtgctcagcctgccctacgccatggctcacctgggatgg 200 ||||||||| |||| ||||||||||||||||| |||||| Sbjct: 71013 gtgctcagcttgccgtacgccatggctcacctaggatgg 70975
>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence Length = 176383 Score = 262 bits (132), Expect = 1e-66 Identities = 204/228 (89%) Strand = Plus / Minus Query: 223 tggtgtcgtggtgcatcacgctgtacacgctgcggctgctgatcgagctccacgagtgcg 282 ||||||||||| | || |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 168944 tggtgtcgtgggggatgacgctgtacacgctgcggctgctgatcgagctgcacgagtgcg 168885 Query: 283 tgcctggcgtgcggttcgaccggtatcgcgacctgggcgtgcacgcgctcggcccgcggc 342 |||| || ||||||||||||||||| |||||||| |||| ||||||||| |||||||| | Sbjct: 168884 tgcccggggtgcggttcgaccggtaccgcgacctcggcgcgcacgcgctgggcccgcgcc 168825 Query: 343 tgggcctgtgggtggtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggtct 402 |||| | ||| | || ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 168824 tggggccctggctcgtcgtgccgcagcagctcatcgtgcagctcggctgcgacgtggtgt 168765 Query: 403 acatggtcaccggcggcaactgcctgcagaagttcgccgagtcggtgt 450 ||||||||| |||||| || ||||| |||||||||||||||||||| Sbjct: 168764 acatggtcatcggcgggaaatgcctcatgaagttcgccgagtcggtgt 168717 Score = 161 bits (81), Expect = 3e-36 Identities = 123/137 (89%) Strand = Plus / Minus Query: 474 cagtcctactggatctgcatcttcggctcctcccagttcctgctctcccagctgcgcgac 533 ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| | | | Sbjct: 168684 cagtcctactggatctgcatcttcggcgcctcccagttcctcctctcccagctccccagc 168625 Query: 534 ctcaactccatcaccgccatctctctcgccgccgccgtcatgtccctcagctactccacc 593 ||| |||||||||||||| |||| ||||||||||||| ||||||| || ||||||| || Sbjct: 168624 ctcgactccatcaccgccgtctccctcgccgccgccgccatgtccgtcggctactcgacg 168565 Query: 594 atatcatgggcggcgtg 610 ||||||||||||||||| Sbjct: 168564 atatcatgggcggcgtg 168548 Score = 125 bits (63), Expect = 2e-25 Identities = 90/99 (90%) Strand = Plus / Minus Query: 102 cgccgtgccaaatggtggtacgtgacgttccacaatgtcaccgcgatggtcggcgccggc 161 ||||| || ||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct: 169160 cgccgggcgaaatggtggtacgcgacgttccacagcgtcaccgccatggtcggcgccggc 169101 Query: 162 gtgctcagcctgccctacgccatggctcacctgggatgg 200 ||||||||| |||| ||||||||||||||||| |||||| Sbjct: 169100 gtgctcagcttgccgtacgccatggctcacctaggatgg 169062
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 262 bits (132), Expect = 1e-66 Identities = 204/228 (89%) Strand = Plus / Minus Query: 223 tggtgtcgtggtgcatcacgctgtacacgctgcggctgctgatcgagctccacgagtgcg 282 ||||||||||| | || |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 23074527 tggtgtcgtgggggatgacgctgtacacgctgcggctgctgatcgagctgcacgagtgcg 23074468 Query: 283 tgcctggcgtgcggttcgaccggtatcgcgacctgggcgtgcacgcgctcggcccgcggc 342 |||| || ||||||||||||||||| |||||||| |||| ||||||||| |||||||| | Sbjct: 23074467 tgcccggggtgcggttcgaccggtaccgcgacctcggcgcgcacgcgctgggcccgcgcc 23074408 Query: 343 tgggcctgtgggtggtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggtct 402 |||| | ||| | || ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 23074407 tggggccctggctcgtcgtgccgcagcagctcatcgtgcagctcggctgcgacgtggtgt 23074348 Query: 403 acatggtcaccggcggcaactgcctgcagaagttcgccgagtcggtgt 450 ||||||||| |||||| || ||||| |||||||||||||||||||| Sbjct: 23074347 acatggtcatcggcgggaaatgcctcatgaagttcgccgagtcggtgt 23074300 Score = 161 bits (81), Expect = 3e-36 Identities = 123/137 (89%) Strand = Plus / Minus Query: 474 cagtcctactggatctgcatcttcggctcctcccagttcctgctctcccagctgcgcgac 533 ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| | | | Sbjct: 23074267 cagtcctactggatctgcatcttcggcgcctcccagttcctcctctcccagctccccagc 23074208 Query: 534 ctcaactccatcaccgccatctctctcgccgccgccgtcatgtccctcagctactccacc 593 ||| |||||||||||||| |||| ||||||||||||| ||||||| || ||||||| || Sbjct: 23074207 ctcgactccatcaccgccgtctccctcgccgccgccgccatgtccgtcggctactcgacg 23074148 Query: 594 atatcatgggcggcgtg 610 ||||||||||||||||| Sbjct: 23074147 atatcatgggcggcgtg 23074131 Score = 125 bits (63), Expect = 2e-25 Identities = 90/99 (90%) Strand = Plus / Minus Query: 102 cgccgtgccaaatggtggtacgtgacgttccacaatgtcaccgcgatggtcggcgccggc 161 ||||| || ||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct: 23074743 cgccgggcgaaatggtggtacgcgacgttccacagcgtcaccgccatggtcggcgccggc 23074684 Query: 162 gtgctcagcctgccctacgccatggctcacctgggatgg 200 ||||||||| |||| ||||||||||||||||| |||||| Sbjct: 23074683 gtgctcagcttgccgtacgccatggctcacctaggatgg 23074645
>gb|AY109430.1| Zea mays CL217_2 mRNA sequence Length = 2589 Score = 105 bits (53), Expect = 2e-19 Identities = 56/57 (98%) Strand = Plus / Plus Query: 129 ttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 355 ttccacaatgtcaccgccatggtcggcgccggcgtgctcagcctgccctacgccatg 411 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactccaccat 595 ||||||||||||||| ||||||||||||||||| Sbjct: 810 cgccgccgtcatgtcgctcagctactccaccat 842 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 339 cggctgggcctgtgggtggtggtgccgcagcagct 373 ||||||||||||||| | ||||||||||||||||| Sbjct: 565 cggctgggcctgtggatcgtggtgccgcagcagct 599
>dbj|AK070297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052C04, full insert sequence Length = 1769 Score = 97.6 bits (49), Expect = 4e-17 Identities = 232/293 (79%) Strand = Plus / Plus Query: 129 ttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatggct 188 |||||||| |||||||| ||||||||||||||||| |||||||| |||| ||||||| | Sbjct: 198 ttccacaacgtcaccgccatggtcggcgccggcgtcctcagcctccccttcgccatgtcc 257 Query: 189 cacctgggatgggggccagggatagtggcgttgctggtgtcgtggtgcatcacgctgtac 248 | || || ||||| || ||| | | |||| || | |||||||| |||||||||||| Sbjct: 258 gagctcggctggggtccgggggtggcggcgatgatcatgtcgtgggtgatcacgctgtac 317 Query: 249 acgctgcggctgctgatcgagctccacgagtgcgtgcctggcgtgcggttcgaccggtat 308 |||||| ||| | || | ||| | |||||||||||||| || ||||||||||||||| Sbjct: 318 acgctgtggcagatggtggagatgcacgagtgcgtgccggggcggcggttcgaccggtac 377 Query: 309 cgcgacctgggcgtgcacgcgctcggcccgcggctgggcctgtgggtggtggtgccgcag 368 | ||| || || ||||||| |||| |||||| |||||| | |||||||||||| Sbjct: 378 cacgagctcgggcagcacgcgttcggggacaagctggggctgtggatcgtggtgccgcag 437 Query: 369 cagctcatcgtgcagctcggctgcgacgtggtctacatggtcaccggcggcaa 421 |||||| |||| || ||||| | | | ||||||||||||||||||||||| Sbjct: 438 cagctcgtcgtcgaggtcggcgtctgcatcgtctacatggtcaccggcggcaa 490 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 516 ctctcccagctgcgcgacctcaactccatcaccgccatctctctcgccgccgccgtcatg 575 ||||||||||| | | || |||||||||||| || | |||| |||||||||||||||||| Sbjct: 588 ctctcccagctccccaacttcaactccatcagcggcgtctccctcgccgccgccgtcatg 647 Query: 576 tccctcagctactccaccat 595 || ||||||||||||||||| Sbjct: 648 tcgctcagctactccaccat 667
>ref|XM_479903.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1743 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Plus Query: 129 ttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 227 ttccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatg 283 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 535 tcaactccatcaccgccatctctctcgccgccgccgtcatgtccctcagctactccacca 594 ||||||||||| ||| | | || |||||||||||||||||||| |||||||||||||||| Sbjct: 639 tcaactccatctccggcgtgtccctcgccgccgccgtcatgtcgctcagctactccacca 698 Query: 595 t 595 | Sbjct: 699 t 699 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 341 gctgggcctgtgggtggtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggt 400 ||||||||| ||| | |||||||||||||||||| |||| || ||||| | || | || Sbjct: 439 gctgggcctctggatcgtggtgccgcagcagctcgtcgtcgaggtcggcgtcaacatcgt 498 Query: 401 ctacatggtcaccggcggcaa 421 |||||||||||||||||||| Sbjct: 499 gtacatggtcaccggcggcaa 519
>ref|XM_507109.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1163_G08.25 mRNA Length = 1755 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Plus Query: 129 ttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 301 ttccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatg 357 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 535 tcaactccatcaccgccatctctctcgccgccgccgtcatgtccctcagctactccacca 594 ||||||||||| ||| | | || |||||||||||||||||||| |||||||||||||||| Sbjct: 713 tcaactccatctccggcgtgtccctcgccgccgccgtcatgtcgctcagctactccacca 772 Query: 595 t 595 | Sbjct: 773 t 773 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 341 gctgggcctgtgggtggtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggt 400 ||||||||| ||| | |||||||||||||||||| |||| || ||||| | || | || Sbjct: 513 gctgggcctctggatcgtggtgccgcagcagctcgtcgtcgaggtcggcgtcaacatcgt 572 Query: 401 ctacatggtcaccggcggcaa 421 |||||||||||||||||||| Sbjct: 573 gtacatggtcaccggcggcaa 593
>emb|AJ557777.1|OSA557777 Oryza sativa (indica cultivar-group) proplastid ht gene for histidine amino acid transporter Length = 3919 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Plus Query: 129 ttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 1421 ttccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatg 1477 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 535 tcaactccatcaccgccatctctctcgccgccgccgtcatgtccctcagctactccacca 594 ||||||||||| ||| | | || |||||||||||||||||||| |||||||||||||||| Sbjct: 1925 tcaactccatctccggcgtgtccctcgccgccgccgtcatgtcgctcagctactccacca 1984 Query: 595 t 595 | Sbjct: 1985 t 1985 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 341 gctgggcctgtgggtggtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggt 400 ||||||||| ||| | |||||||||||||||||| |||| || ||||| | || | || Sbjct: 1725 gctgggcctctggatcgtggtgccgcagcagctcgtcgtcgaggtcggcgtcaacatcgt 1784 Query: 401 ctacatggtcaccggcggcaa 421 |||||||||||||||||||| Sbjct: 1785 gtacatggtcaccggcggcaa 1805
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Plus Query: 129 ttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 1558685 ttccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatg 1558741 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 535 tcaactccatcaccgccatctctctcgccgccgccgtcatgtccctcagctactccacca 594 ||||||||||| ||| | | || |||||||||||||||||||| |||||||||||||||| Sbjct: 1559189 tcaactccatctccggcgtgtccctcgccgccgccgtcatgtcgctcagctactccacca 1559248 Query: 595 t 595 | Sbjct: 1559249 t 1559249 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 341 gctgggcctgtgggtggtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggt 400 ||||||||| ||| | |||||||||||||||||| |||| || ||||| | || | || Sbjct: 1558989 gctgggcctctggatcgtggtgccgcagcagctcgtcgtcgaggtcggcgtcaacatcgt 1559048 Query: 401 ctacatggtcaccggcggcaa 421 |||||||||||||||||||| Sbjct: 1559049 gtacatggtcaccggcggcaa 1559069
>dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1163_G08 Length = 150676 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Plus Query: 129 ttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 86173 ttccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatg 86229 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 535 tcaactccatcaccgccatctctctcgccgccgccgtcatgtccctcagctactccacca 594 ||||||||||| ||| | | || |||||||||||||||||||| |||||||||||||||| Sbjct: 86677 tcaactccatctccggcgtgtccctcgccgccgccgtcatgtcgctcagctactccacca 86736 Query: 595 t 595 | Sbjct: 86737 t 86737 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 341 gctgggcctgtgggtggtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggt 400 ||||||||| ||| | |||||||||||||||||| |||| || ||||| | || | || Sbjct: 86477 gctgggcctctggatcgtggtgccgcagcagctcgtcgtcgaggtcggcgtcaacatcgt 86536 Query: 401 ctacatggtcaccggcggcaa 421 |||||||||||||||||||| Sbjct: 86537 gtacatggtcaccggcggcaa 86557
>dbj|AK102015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080E11, full insert sequence Length = 1754 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Plus Query: 129 ttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 301 ttccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatg 357 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 558 ctcgccgccgccgtcatgtccctcagctactccaccat 595 |||||||||||||||||||| ||||||||||||||||| Sbjct: 736 ctcgccgccgccgtcatgtcgctcagctactccaccat 773 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 341 gctgggcctgtgggtggtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggt 400 ||||||||| ||| | |||||||||||||||||| |||| || ||||| | || | || Sbjct: 513 gctgggcctctggatcgtggtgccgcagcagctcgtcgtcgaggtcggcgtcaacatcgt 572 Query: 401 ctacatggtcaccggcggcaa 421 |||||||||||||||||||| Sbjct: 573 gtacatggtcaccggcggcaa 593
>dbj|AK065217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002G10, full insert sequence Length = 1744 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Plus Query: 129 ttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 228 ttccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatg 284 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 535 tcaactccatcaccgccatctctctcgccgccgccgtcatgtccctcagctactccacca 594 ||||||||||| ||| | | || |||||||||||||||||||| |||||||||||||||| Sbjct: 640 tcaactccatctccggcgtgtccctcgccgccgccgtcatgtcgctcagctactccacca 699 Query: 595 t 595 | Sbjct: 700 t 700 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 341 gctgggcctgtgggtggtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggt 400 ||||||||| ||| | |||||||||||||||||| |||| || ||||| | || | || Sbjct: 440 gctgggcctctggatcgtggtgccgcagcagctcgtcgtcgaggtcggcgtcaacatcgt 499 Query: 401 ctacatggtcaccggcggcaa 421 |||||||||||||||||||| Sbjct: 500 gtacatggtcaccggcggcaa 520
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 516 ctctcccagctgcgcgacctcaactccatcaccgccatctctctcgccgccgccgtcatg 575 ||||||||||| | | || |||||||||||| || | |||| |||||||||||||||||| Sbjct: 7997070 ctctcccagctccccaacttcaactccatcagcggcgtctccctcgccgccgccgtcatg 7997129 Query: 576 tccctcagctactccaccat 595 || ||||||||||||||||| Sbjct: 7997130 tcgctcagctactccaccat 7997149 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 129 ttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 |||||||| |||||||| ||||||||||||||||| |||||||| |||| ||||||| Sbjct: 7996597 ttccacaacgtcaccgccatggtcggcgccggcgtcctcagcctccccttcgccatg 7996653 Score = 65.9 bits (33), Expect = 1e-07 Identities = 147/185 (79%) Strand = Plus / Plus Query: 237 atcacgctgtacacgctgcggctgctgatcgagctccacgagtgcgtgcctggcgtgcgg 296 |||||||||||||||||| ||| | || | ||| | |||||||||||||| || |||| Sbjct: 7996788 atcacgctgtacacgctgtggcagatggtggagatgcacgagtgcgtgccggggcggcgg 7996847 Query: 297 ttcgaccggtatcgcgacctgggcgtgcacgcgctcggcccgcggctgggcctgtgggtg 356 ||||||||||| | ||| || || ||||||| |||| |||||| |||||| | Sbjct: 7996848 ttcgaccggtaccacgagctcgggcagcacgcgttcggggacaagctggggctgtggatc 7996907 Query: 357 gtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggtctacatggtcaccggc 416 |||||||||||||||||| |||| || ||||| | | | |||||||||||||||||| Sbjct: 7996908 gtggtgccgcagcagctcgtcgtcgaggtcggcgtctgcatcgtctacatggtcaccggc 7996967 Query: 417 ggcaa 421 ||||| Sbjct: 7996968 ggcaa 7996972 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 4892980 cgccgccgtcatgtccttcacctactcc 4892953 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 4144967 cgccgccgtcatgtccttcacctactcc 4144940 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 4120614 cgccgccgtcatgtccttcacctactcc 4120641
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 516 ctctcccagctgcgcgacctcaactccatcaccgccatctctctcgccgccgccgtcatg 575 ||||||||||| | | || |||||||||||| || | |||| |||||||||||||||||| Sbjct: 7996951 ctctcccagctccccaacttcaactccatcagcggcgtctccctcgccgccgccgtcatg 7997010 Query: 576 tccctcagctactccaccat 595 || ||||||||||||||||| Sbjct: 7997011 tcgctcagctactccaccat 7997030 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 129 ttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 |||||||| |||||||| ||||||||||||||||| |||||||| |||| ||||||| Sbjct: 7996478 ttccacaacgtcaccgccatggtcggcgccggcgtcctcagcctccccttcgccatg 7996534 Score = 65.9 bits (33), Expect = 1e-07 Identities = 147/185 (79%) Strand = Plus / Plus Query: 237 atcacgctgtacacgctgcggctgctgatcgagctccacgagtgcgtgcctggcgtgcgg 296 |||||||||||||||||| ||| | || | ||| | |||||||||||||| || |||| Sbjct: 7996669 atcacgctgtacacgctgtggcagatggtggagatgcacgagtgcgtgccggggcggcgg 7996728 Query: 297 ttcgaccggtatcgcgacctgggcgtgcacgcgctcggcccgcggctgggcctgtgggtg 356 ||||||||||| | ||| || || ||||||| |||| |||||| |||||| | Sbjct: 7996729 ttcgaccggtaccacgagctcgggcagcacgcgttcggggacaagctggggctgtggatc 7996788 Query: 357 gtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggtctacatggtcaccggc 416 |||||||||||||||||| |||| || ||||| | | | |||||||||||||||||| Sbjct: 7996789 gtggtgccgcagcagctcgtcgtcgaggtcggcgtctgcatcgtctacatggtcaccggc 7996848 Query: 417 ggcaa 421 ||||| Sbjct: 7996849 ggcaa 7996853 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 4892962 cgccgccgtcatgtccttcacctactcc 4892935 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 4144954 cgccgccgtcatgtccttcacctactcc 4144927 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 4120601 cgccgccgtcatgtccttcacctactcc 4120628
>emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa0077B14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153111 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 516 ctctcccagctgcgcgacctcaactccatcaccgccatctctctcgccgccgccgtcatg 575 ||||||||||| | | || |||||||||||| || | |||| |||||||||||||||||| Sbjct: 3100 ctctcccagctccccaacttcaactccatcagcggcgtctccctcgccgccgccgtcatg 3041 Query: 576 tccctcagctactccaccat 595 || ||||||||||||||||| Sbjct: 3040 tcgctcagctactccaccat 3021 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 129 ttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 |||||||| |||||||| ||||||||||||||||| |||||||| |||| ||||||| Sbjct: 3573 ttccacaacgtcaccgccatggtcggcgccggcgtcctcagcctccccttcgccatg 3517 Score = 65.9 bits (33), Expect = 1e-07 Identities = 147/185 (79%) Strand = Plus / Minus Query: 237 atcacgctgtacacgctgcggctgctgatcgagctccacgagtgcgtgcctggcgtgcgg 296 |||||||||||||||||| ||| | || | ||| | |||||||||||||| || |||| Sbjct: 3382 atcacgctgtacacgctgtggcagatggtggagatgcacgagtgcgtgccggggcggcgg 3323 Query: 297 ttcgaccggtatcgcgacctgggcgtgcacgcgctcggcccgcggctgggcctgtgggtg 356 ||||||||||| | ||| || || ||||||| |||| |||||| |||||| | Sbjct: 3322 ttcgaccggtaccacgagctcgggcagcacgcgttcggggacaagctggggctgtggatc 3263 Query: 357 gtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggtctacatggtcaccggc 416 |||||||||||||||||| |||| || ||||| | | | |||||||||||||||||| Sbjct: 3262 gtggtgccgcagcagctcgtcgtcgaggtcggcgtctgcatcgtctacatggtcaccggc 3203 Query: 417 ggcaa 421 ||||| Sbjct: 3202 ggcaa 3198
>emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005_G05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151117 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 516 ctctcccagctgcgcgacctcaactccatcaccgccatctctctcgccgccgccgtcatg 575 ||||||||||| | | || |||||||||||| || | |||| |||||||||||||||||| Sbjct: 146608 ctctcccagctccccaacttcaactccatcagcggcgtctccctcgccgccgccgtcatg 146549 Query: 576 tccctcagctactccaccat 595 || ||||||||||||||||| Sbjct: 146548 tcgctcagctactccaccat 146529 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 129 ttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 |||||||| |||||||| ||||||||||||||||| |||||||| |||| ||||||| Sbjct: 147081 ttccacaacgtcaccgccatggtcggcgccggcgtcctcagcctccccttcgccatg 147025 Score = 65.9 bits (33), Expect = 1e-07 Identities = 147/185 (79%) Strand = Plus / Minus Query: 237 atcacgctgtacacgctgcggctgctgatcgagctccacgagtgcgtgcctggcgtgcgg 296 |||||||||||||||||| ||| | || | ||| | |||||||||||||| || |||| Sbjct: 146890 atcacgctgtacacgctgtggcagatggtggagatgcacgagtgcgtgccggggcggcgg 146831 Query: 297 ttcgaccggtatcgcgacctgggcgtgcacgcgctcggcccgcggctgggcctgtgggtg 356 ||||||||||| | ||| || || ||||||| |||| |||||| |||||| | Sbjct: 146830 ttcgaccggtaccacgagctcgggcagcacgcgttcggggacaagctggggctgtggatc 146771 Query: 357 gtggtgccgcagcagctcatcgtgcagctcggctgcgacgtggtctacatggtcaccggc 416 |||||||||||||||||| |||| || ||||| | | | |||||||||||||||||| Sbjct: 146770 gtggtgccgcagcagctcgtcgtcgaggtcggcgtctgcatcgtctacatggtcaccggc 146711 Query: 417 ggcaa 421 ||||| Sbjct: 146710 ggcaa 146706
>gb|BT009250.1| Triticum aestivum clone wlk4.pk0003.e2:fis, full insert mRNA sequence Length = 1703 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 108 gccaaatggtggtacgtgacgttccacaatgtcaccgcgatggtcggcgccggcgtgctc 167 ||||| ||||||||| | | ||||||||||||||||| ||||||||||| || |||||| Sbjct: 170 gccaagtggtggtactcggccttccacaatgtcaccgccatggtcggcgcgggggtgctc 229 Query: 168 agcctgccctacgccatg 185 ||||| |||||||||||| Sbjct: 230 agcctcccctacgccatg 247 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Plus Query: 341 gctgggcctgtgggtggtggtgccgcagcagctcatcgtg 380 |||||| |||||| | ||||||||||||||||| |||||| Sbjct: 403 gctggggctgtggatcgtggtgccgcagcagctgatcgtg 442
>gb|BT009370.1| Triticum aestivum clone wlm96.pk028.h14:fis, full insert mRNA sequence Length = 1695 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 108 gccaaatggtggtacgtgacgttccacaatgtcaccgcgatggtcggcgccggcgtgctc 167 ||||| ||||||||| | | ||||||||||||||||| ||||| ||||| || |||||| Sbjct: 195 gccaagtggtggtactcggccttccacaatgtcaccgccatggtgggcgcgggagtgctc 254 Query: 168 agcctgccctacgccatg 185 ||||| |||||||||||| Sbjct: 255 agcctcccctacgccatg 272 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 gtggtgccgcagcagctcatcgtg 380 ||||||||||||||||| |||||| Sbjct: 444 gtggtgccgcagcagctgatcgtg 467
>gb|AC105768.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1122_B08, complete sequence Length = 143955 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 127 cgttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 |||||||||| |||||||| ||||||||||||||||| ||| |||| |||| ||||||| Sbjct: 49950 cgttccacaacgtcaccgccatggtcggcgccggcgtcctcggcctccccttcgccatg 49892 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 360 gtgccgcagcagctcatcgtgcagctcggctgcgacgtggtctacatggtcaccggcggc 419 ||||||| ||||||||||| ||| ||||| |||| | ||||||||||||||||||||| Sbjct: 49711 gtgccgctccagctcatcgtccaggtcggcaccgacatcgtctacatggtcaccggcggc 49652 Score = 50.1 bits (25), Expect = 0.009 Identities = 49/57 (85%) Strand = Plus / Minus Query: 535 tcaactccatcaccgccatctctctcgccgccgccgtcatgtccctcagctactcca 591 ||||||||||| ||||| |||| ||||||||||| |||||| ||| ||||||||| Sbjct: 49533 tcaactccatctccgccgtctccgccgccgccgccgccatgtcgctctgctactcca 49477 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Minus Query: 236 catcacgctgtacacgctgcggctgctgatcgagctccacgag 278 ||||||||| ||||||||| ||| |||| | |||||||||||| Sbjct: 49841 catcacgctctacacgctgtggcagctggtggagctccacgag 49799
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 127 cgttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 |||||||||| |||||||| ||||||||||||||||| ||| |||| |||| ||||||| Sbjct: 8328906 cgttccacaacgtcaccgccatggtcggcgccggcgtcctcggcctccccttcgccatg 8328848 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 360 gtgccgcagcagctcatcgtgcagctcggctgcgacgtggtctacatggtcaccggcggc 419 ||||||| ||||||||||| ||| ||||| |||| | ||||||||||||||||||||| Sbjct: 8328667 gtgccgctccagctcatcgtccaggtcggcaccgacatcgtctacatggtcaccggcggc 8328608 Score = 50.1 bits (25), Expect = 0.009 Identities = 49/57 (85%) Strand = Plus / Minus Query: 535 tcaactccatcaccgccatctctctcgccgccgccgtcatgtccctcagctactcca 591 ||||||||||| ||||| |||| ||||||||||| |||||| ||| ||||||||| Sbjct: 8328489 tcaactccatctccgccgtctccgccgccgccgccgccatgtcgctctgctactcca 8328433 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Minus Query: 236 catcacgctgtacacgctgcggctgctgatcgagctccacgag 278 ||||||||| ||||||||| ||| |||| | |||||||||||| Sbjct: 8328797 catcacgctctacacgctgtggcagctggtggagctccacgag 8328755 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactccaccat 595 ||||||||||||||| ||| |||||||||||| Sbjct: 20635785 cgccgccgtcatgtcgttcacctactccaccat 20635817 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 ggtggtggtgccgcagcagc 372 |||||||||||||||||||| Sbjct: 13342814 ggtggtggtgccgcagcagc 13342833
>ref|NM_105432.1| Arabidopsis thaliana amino acid permease/ amino acid-polyamine transporter AT1G67640 mRNA, complete cds Length = 1326 Score = 48.1 bits (24), Expect = 0.034 Identities = 63/76 (82%) Strand = Plus / Plus Query: 127 cgttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatgg 186 |||| |||||||||||||| |||||||| || || || |||||| | || ||||||||| Sbjct: 110 cgtttcacaatgtcaccgccatggtcggggctggtgtactcagcttaccttacgccatgt 169 Query: 187 ctcacctgggatgggg 202 || | || |||||||| Sbjct: 170 ctaatcttggatgggg 185
>gb|DQ446407.1| Arabidopsis thaliana clone pENTR221-At1g67640 lysine and histidine specific transporter (At1g67640) mRNA, complete cds Length = 1326 Score = 48.1 bits (24), Expect = 0.034 Identities = 63/76 (82%) Strand = Plus / Plus Query: 127 cgttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatgg 186 |||| |||||||||||||| |||||||| || || || |||||| | || ||||||||| Sbjct: 110 cgtttcacaatgtcaccgccatggtcggggctggtgtactcagcttaccttacgccatgt 169 Query: 187 ctcacctgggatgggg 202 || | || |||||||| Sbjct: 170 ctaatcttggatgggg 185
>gb|BT009014.1| Triticum aestivum clone wdk3c.pk006.d6:fis, full insert mRNA sequence Length = 1785 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 564 gccgccgtcatgtccctcagctactccaccat 595 ||||||||||||||| ||| |||||||||||| Sbjct: 700 gccgccgtcatgtccttcacctactccaccat 731
>ref|NM_123443.4| Arabidopsis thaliana LHT1 AT5G40780 (LHT1) transcript variant AT5G40780.2 mRNA, complete cds Length = 1671 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Plus Query: 132 cacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatggctcac 191 |||||||||||||| |||||||| ||||| || || | || || ||||||||| |||| Sbjct: 268 cacaatgtcaccgccatggtcggtgccggagttcttggactcccttacgccatgtctcag 327 Query: 192 ctgggatgggg 202 || |||||||| Sbjct: 328 ctcggatgggg 338
>ref|NM_180778.2| Arabidopsis thaliana LHT1; amino acid permease AT5G40780 (LHT1) transcript variant AT5G40780.1 mRNA, complete cds Length = 1705 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Plus Query: 132 cacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatggctcac 191 |||||||||||||| |||||||| ||||| || || | || || ||||||||| |||| Sbjct: 302 cacaatgtcaccgccatggtcggtgccggagttcttggactcccttacgccatgtctcag 361 Query: 192 ctgggatgggg 202 || |||||||| Sbjct: 362 ctcggatgggg 372
>gb|AY133550.1| Arabidopsis thaliana At5g40780/K1B16_3 mRNA, complete cds Length = 1341 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Plus Query: 132 cacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatggctcac 191 |||||||||||||| |||||||| ||||| || || | || || ||||||||| |||| Sbjct: 130 cacaatgtcaccgccatggtcggtgccggagttcttggactcccttacgccatgtctcag 189 Query: 192 ctgggatgggg 202 || |||||||| Sbjct: 190 ctcggatgggg 200
>gb|AF367281.1|AF367281 Arabidopsis thaliana AT5g40780/K1B16_3 mRNA, complete cds Length = 1631 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Plus Query: 132 cacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatggctcac 191 |||||||||||||| |||||||| ||||| || || | || || ||||||||| |||| Sbjct: 233 cacaatgtcaccgccatggtcggtgccggagttcttggactcccttacgccatgtctcag 292 Query: 192 ctgggatgggg 202 || |||||||| Sbjct: 293 ctcggatgggg 303
>emb|BX829958.1|CNS0A092 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB49ZF05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1499 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Plus Query: 132 cacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatggctcac 191 |||||||||||||| |||||||| ||||| || || | || || ||||||||| |||| Sbjct: 141 cacaatgtcaccgccatggtcggtgccggagttcttggactcccttacgccatgtctcag 200 Query: 192 ctgggatgggg 202 || |||||||| Sbjct: 201 ctcggatgggg 211
>emb|BX829887.1|CNS0A045 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB43ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1667 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Plus Query: 132 cacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatggctcac 191 |||||||||||||| |||||||| ||||| || || | || || ||||||||| |||| Sbjct: 302 cacaatgtcaccgccatggtcggtgccggagttcttggactcccttacgccatgtctcag 361 Query: 192 ctgggatgggg 202 || |||||||| Sbjct: 362 ctcggatgggg 372
>emb|BX830932.1|CNS09ZDV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS3ZG05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1638 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Plus Query: 132 cacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatggctcac 191 |||||||||||||| |||||||| ||||| || || | || || ||||||||| |||| Sbjct: 268 cacaatgtcaccgccatggtcggtgccggagttcttggactcccttacgccatgtctcag 327 Query: 192 ctgggatgggg 202 || |||||||| Sbjct: 328 ctcggatgggg 338
>gb|AC011020.8|AC011020 Arabidopsis thaliana chromosome 1 BAC F12B7 genomic sequence, complete sequence Length = 91529 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Minus Query: 127 cgttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 |||| |||||||||||||| |||||||| || || || |||||| | || ||||||||| Sbjct: 86249 cgtttcacaatgtcaccgccatggtcggggctggtgtactcagcttaccttacgccatg 86191
>gb|AC008113.4|AC008113 Genomic sequence for Arabidopsis thaliana BAC F12A21 from chromosome I, complete sequence Length = 114190 Score = 46.1 bits (23), Expect = 0.13 Identities = 50/59 (84%) Strand = Plus / Plus Query: 127 cgttccacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatg 185 |||| |||||||||||||| |||||||| || || || |||||| | || ||||||||| Sbjct: 89565 cgtttcacaatgtcaccgccatggtcggggctggtgtactcagcttaccttacgccatg 89623
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 326 cgcgctcggcccgcggctgggcc 348 ||||||||||||||||||||||| Sbjct: 6750744 cgcgctcggcccgcggctgggcc 6750722 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ctacgccatggctcacctgg 195 |||||||||||||||||||| Sbjct: 280387 ctacgccatggctcacctgg 280368
>gb|U39782.1|ATU39782 Arabidopsis thaliana lysine and histidine specific transporter mRNA, complete cds Length = 1664 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Plus Query: 132 cacaatgtcaccgcgatggtcggcgccggcgtgctcagcctgccctacgccatggctcac 191 |||||||||||||| |||||||| ||||| || || | || || ||||||||| |||| Sbjct: 230 cacaatgtcaccgccatggtcggtgccggagttcttggactcccttacgccatgtctcag 289 Query: 192 ctgggatgggg 202 || |||||||| Sbjct: 290 ctcggatgggg 300
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 143 cgcgatggtcggcgccggcgtg 164 |||||||||||||||||||||| Sbjct: 1765866 cgcgatggtcggcgccggcgtg 1765887 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 tcatcgtgcagctcggctgc 392 |||||||||||||||||||| Sbjct: 3582563 tcatcgtgcagctcggctgc 3582582
>gb|AY453853.1| Bacteriophage phi1026b, complete genome Length = 54865 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 143 cgcgatggtcggcgccggcgtg 164 |||||||||||||||||||||| Sbjct: 29903 cgcgatggtcggcgccggcgtg 29924
>gb|AC140027.11| Medicago truncatula clone mth2-5m21, complete sequence Length = 131365 Score = 44.1 bits (22), Expect = 0.53 Identities = 70/86 (81%) Strand = Plus / Plus Query: 102 cgccgtgccaaatggtggtacgtgacgttccacaatgtcaccgcgatggtcggcgccggc 161 ||||| ||||||||||||||| ||| ||||||| || || || ||| | || ||||| Sbjct: 30583 cgccgagccaaatggtggtactcgactttccacacggtgacagccatgataggtgccggt 30642 Query: 162 gtgctcagcctgccctacgccatggc 187 || ||||||||||| || |||||||| Sbjct: 30643 gttctcagcctgccatatgccatggc 30668
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 549 gccatctctctcgccgccgccg 570 |||||||||||||||||||||| Sbjct: 17400467 gccatctctctcgccgccgccg 17400488 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cggcgccggcgtgctcagcc 171 |||||||||||||||||||| Sbjct: 21190976 cggcgccggcgtgctcagcc 21190995
>dbj|AP004684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0012H03 Length = 163377 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 549 gccatctctctcgccgccgccg 570 |||||||||||||||||||||| Sbjct: 31508 gccatctctctcgccgccgccg 31529
>dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H06 Length = 142832 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 549 gccatctctctcgccgccgccg 570 |||||||||||||||||||||| Sbjct: 137060 gccatctctctcgccgccgccg 137081
>ref|XM_470106.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1283 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 150 gtcggcgccggcgtgctcagcctgccctacgcc 182 |||||| ||||||||||| |||| ||||||||| Sbjct: 114 gtcggcaccggcgtgctcggcctcccctacgcc 146
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02, complete sequence Length = 125650 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactccaccat 595 ||||||||||||||| ||| |||||||||||| Sbjct: 57825 cgccgccgtcatgtcgttcacctactccaccat 57857
>gb|AC115793.14| Mus musculus chromosome 9, clone RP23-400G18, complete sequence Length = 199109 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 502 cctcccagttcctgctctccc 522 ||||||||||||||||||||| Sbjct: 74269 cctcccagttcctgctctccc 74249
>gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 atrazine catabolic region, partial sequence Length = 161264 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 409 tcaccggcggcaactgcctgc 429 ||||||||||||||||||||| Sbjct: 63289 tcaccggcggcaactgcctgc 63309
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 150 gtcggcgccggcgtgctcagcctgccctacgcc 182 |||||| ||||||||||| |||| ||||||||| Sbjct: 33967601 gtcggcaccggcgtgctcggcctcccctacgcc 33967633
>emb|CR392011.17| Zebrafish DNA sequence from clone DKEY-272L17 in linkage group 17, complete sequence Length = 88745 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 571 tcatgtccctcagctactcca 591 ||||||||||||||||||||| Sbjct: 41650 tcatgtccctcagctactcca 41670
>gb|BT009124.1| Triticum aestivum clone wl1n.pk0014.c11:fis, full insert mRNA sequence Length = 1376 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactccaccat 595 ||||||||||||||||||| ||||||| |||| Sbjct: 82 cgccgccgtcatgtccctcgcctactcctccat 114
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 150 gtcggcgccggcgtgctcagcctgccctacgcc 182 |||||| ||||||||||| |||| ||||||||| Sbjct: 34058073 gtcggcaccggcgtgctcggcctcccctacgcc 34058105
>gb|AF098758.1|AF098758 Gracilaria gracilis microsatellite Gg122R sequence Length = 628 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 546 accgccatctctctcgccgccgccg 570 |||||| |||||||||||||||||| Sbjct: 287 accgccttctctctcgccgccgccg 263
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 150 gtcggcgccggcgtgctcagcctgccctacgcc 182 |||||| ||||||||||| |||| ||||||||| Sbjct: 90090 gtcggcaccggcgtgctcggcctcccctacgcc 90058
>dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, complete sequence Length = 184026 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 tcaccgcgatggtcggcgccggcgt 163 |||||||||||||||||| |||||| Sbjct: 41345 tcaccgcgatggtcggcgacggcgt 41369
>dbj|AB113355.2| Sus scrofa 433 kb genomic segment, located between the non-classical and classical SLA class I gene cluster, clone: BAC 353A11 Length = 144448 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 502 cctcccagttcctgctctcccagct 526 |||||||||||| |||||||||||| Sbjct: 23785 cctcccagttccagctctcccagct 23809
>dbj|AB113354.2| Sus scrofa 433 kb genomic segment, located between the non-classical and classical SLA class I gene cluster, clone: BAC 499E6 Length = 154749 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 502 cctcccagttcctgctctcccagct 526 |||||||||||| |||||||||||| Sbjct: 137163 cctcccagttccagctctcccagct 137187
>dbj|AB015470.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1B16 Length = 14323 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 132 cacaatgtcaccgcgatggtcggcgccgg 160 |||||||||||||| |||||||| ||||| Sbjct: 13996 cacaatgtcaccgccatggtcggtgccgg 14024
>dbj|AK121940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D18, full insert sequence Length = 1515 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 150 gtcggcgccggcgtgctcagcctgccctacgcc 182 |||||| ||||||||||| |||| ||||||||| Sbjct: 127 gtcggcaccggcgtgctcggcctcccctacgcc 159
>dbj|AK065891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044D15, full insert sequence Length = 1975 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactccaccat 595 ||||||||||||||| ||| |||||||||||| Sbjct: 723 cgccgccgtcatgtcgttcacctactccaccat 755
>ref|NM_105822.1| Arabidopsis thaliana amino acid permease AT1G71680 mRNA, complete cds Length = 1305 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 129 ttccacaatgtcaccgcgatggtcggcgccgg 160 |||||||||||||| || ||||| |||||||| Sbjct: 136 ttccacaatgtcacggccatggttggcgccgg 167
>gb|AC160245.2| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940136D9, complete sequence Length = 121820 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 cgcgatggtcggcgccggcg 162 |||||||||||||||||||| Sbjct: 89509 cgcgatggtcggcgccggcg 89490
>ref|XM_463785.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1814 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 798 cgccgccgtcatgtccttcacctactcc 825
>gb|AC169509.1| Mus musculus BAC clone RP23-137L8 from chromosome 16, complete sequence Length = 206061 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 500 ctcctcccagttcctgctctccca 523 ||||||||||||||||| |||||| Sbjct: 144285 ctcctcccagttcctgccctccca 144308
>ref|XM_463528.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1467 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 606 cgccgccgtcatgtccttcacctactcc 633
>ref|NM_186481.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2214 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 547 ccgccatctctctcgccgccgccg 570 |||||| ||||||||||||||||| Sbjct: 769 ccgccacctctctcgccgccgccg 746
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 gcgctcggcccgcggctgggcctg 350 ||||||||| |||||||||||||| Sbjct: 639339 gcgctcggcgcgcggctgggcctg 639316
>gb|AC134127.3| Rattus norvegicus 8 BAC CH230-24F13 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 49906 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ggctgggcctgtgggtggtg 359 |||||||||||||||||||| Sbjct: 21466 ggctgggcctgtgggtggtg 21485
>gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1057_C01, complete sequence Length = 142752 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 ggtggtggtgccgcagcagc 372 |||||||||||||||||||| Sbjct: 26277 ggtggtggtgccgcagcagc 26296
>gb|AC096707.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1583_A05, complete sequence Length = 126987 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 ggtggtggtgccgcagcagc 372 |||||||||||||||||||| Sbjct: 120430 ggtggtggtgccgcagcagc 120449
>gb|AC161884.5| Mus musculus BAC clone RP23-77K23 from chromosome 14, complete sequence Length = 243730 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 ctcagctactccaccatatc 598 |||||||||||||||||||| Sbjct: 57523 ctcagctactccaccatatc 57542
>gb|AC115741.9| Mus musculus chromosome 14, clone RP23-476L2, complete sequence Length = 188141 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 579 ctcagctactccaccatatc 598 |||||||||||||||||||| Sbjct: 65128 ctcagctactccaccatatc 65109
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 tgtcaccgcgatggtcggcg 156 |||||||||||||||||||| Sbjct: 408521 tgtcaccgcgatggtcggcg 408502
>emb|BX883047.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 6/11 Length = 349571 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 334 gcccgcggctgggcctgtgggtggtggt 361 ||||| ||||||| |||||||||||||| Sbjct: 181213 gcccgtggctggggctgtgggtggtggt 181240
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 acatggtcaccggcggcaac 422 |||||||||||||||||||| Sbjct: 36360 acatggtcaccggcggcaac 36341
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 gctgcggctgctgatcgagc 270 |||||||||||||||||||| Sbjct: 17394 gctgcggctgctgatcgagc 17375
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14 Length = 349146 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 gctgcggctgctgatcgagc 270 |||||||||||||||||||| Sbjct: 21104 gctgcggctgctgatcgagc 21085
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 acatggtcaccggcggcaac 422 |||||||||||||||||||| Sbjct: 293029 acatggtcaccggcggcaac 293010
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 tcatcgtgcagctcggctgc 392 |||||||||||||||||||| Sbjct: 3323953 tcatcgtgcagctcggctgc 3323972
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 tcggcccgcggctgggcctg 350 |||||||||||||||||||| Sbjct: 499735 tcggcccgcggctgggcctg 499716
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 547 ccgccatctctctcgccgccgccg 570 |||||| ||||||||||||||||| Sbjct: 6153033 ccgccacctctctcgccgccgccg 6153056
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 cgcgatggtcggcgccggcgtgct 166 |||| ||||||||||||||||||| Sbjct: 27263693 cgcggtggtcggcgccggcgtgct 27263716 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 120668 cgccgccgtcatgtccttcacctactcc 120695
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 38305020 cgccgccgtcatgtccttcacctactcc 38304993
>gb|AC156792.2| Mus musculus BAC clone RP24-160P13 from chromosome 12, complete sequence Length = 187170 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 ctcctcccagttcctgctct 519 |||||||||||||||||||| Sbjct: 106555 ctcctcccagttcctgctct 106536
>gb|AC016163.6|AC016163 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence Length = 89653 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 129 ttccacaatgtcaccgcgatggtcggcgccgg 160 |||||||||||||| || ||||| |||||||| Sbjct: 31064 ttccacaatgtcacggccatggttggcgccgg 31033
>gb|AC113610.4| Homo sapiens BAC clone RP11-373H2 from 2, complete sequence Length = 96559 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tgggggccagggatagtggc 217 |||||||||||||||||||| Sbjct: 59978 tgggggccagggatagtggc 59959
>gb|AE004636.1| Pseudomonas aeruginosa PAO1, section 197 of 529 of the complete genome Length = 13280 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 cgccggcgtgctcagcctgc 174 |||||||||||||||||||| Sbjct: 7316 cgccggcgtgctcagcctgc 7335
>gb|AE004617.1| Pseudomonas aeruginosa PAO1, section 178 of 529 of the complete genome Length = 12839 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 151 tcggcgccggcgtgctcagcctgccctacgcc 182 |||||||||||||||| ||| || |||||||| Sbjct: 10814 tcggcgccggcgtgctgagcatggcctacgcc 10783
>gb|AY217549.1| Homo sapiens mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) (MLH1) gene, complete cds Length = 60250 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 cctcaactccatcaccgcca 552 |||||||||||||||||||| Sbjct: 30786 cctcaactccatcaccgcca 30767
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 65845 cgccgccgtcatgtccttcacctactcc 65818
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 cgcgatggtcggcgccggcgtgct 166 |||| ||||||||||||||||||| Sbjct: 114364 cgcggtggtcggcgccggcgtgct 114387
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 acacgctgcggctgctgatc 266 |||||||||||||||||||| Sbjct: 2548706 acacgctgcggctgctgatc 2548725
>dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456F09 Length = 141336 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cggcgccggcgtgctcagcc 171 |||||||||||||||||||| Sbjct: 89637 cggcgccggcgtgctcagcc 89656
>dbj|AP005779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0042J07 Length = 126938 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 547 ccgccatctctctcgccgccgccg 570 |||||| ||||||||||||||||| Sbjct: 56043 ccgccacctctctcgccgccgccg 56066
>dbj|AP003931.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1664_D08 Length = 128553 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 547 ccgccatctctctcgccgccgccg 570 |||||| ||||||||||||||||| Sbjct: 27588 ccgccacctctctcgccgccgccg 27611
>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120825 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 45442 cgccgccgtcatgtccttcacctactcc 45469
>gb|AC012654.2|F14O23 Arabidopsis thaliana chromosome 1 BAC F14O23 sequence, complete sequence Length = 98471 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 129 ttccacaatgtcaccgcgatggtcggcgccgg 160 |||||||||||||| || ||||| |||||||| Sbjct: 4270 ttccacaatgtcacggccatggttggcgccgg 4301
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1370C05 Length = 148271 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 115277 cgccgccgtcatgtccttcacctactcc 115304
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 69695 cgccgccgtcatgtccttcacctactcc 69722
>emb|Y10050.1|RSHISG R.sphaeroides hisG gene Length = 2108 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 gcgctcggcccgcggctgggcctg 350 ||||||||| |||||||||||||| Sbjct: 1450 gcgctcggcgcgcggctgggcctg 1473
>dbj|AK119517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C05, full insert sequence Length = 2055 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 cgcgatggtcggcgccggcgtgct 166 |||| ||||||||||||||||||| Sbjct: 358 cgcggtggtcggcgccggcgtgct 381
>dbj|AK106090.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B07, full insert sequence Length = 1715 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 680 cgccgccgtcatgtccttcacctactcc 707
>dbj|AK105784.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G09, full insert sequence Length = 1773 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 658 cgccgccgtcatgtccttcacctactcc 685
>dbj|AK100650.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D06, full insert sequence Length = 2089 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 cgcgatggtcggcgccggcgtgct 166 |||| ||||||||||||||||||| Sbjct: 355 cgcggtggtcggcgccggcgtgct 378
>dbj|AK100585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106B08, full insert sequence Length = 2977 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 cgcgatggtcggcgccggcgtgct 166 |||| ||||||||||||||||||| Sbjct: 1416 cgcggtggtcggcgccggcgtgct 1439
>dbj|AK067846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127H21, full insert sequence Length = 2425 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 ggtggtggtgccgcagcagc 372 |||||||||||||||||||| Sbjct: 457 ggtggtggtgccgcagcagc 476
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 cgccggcgtgctcagcctgc 174 |||||||||||||||||||| Sbjct: 2866592 cgccggcgtgctcagcctgc 2866611
>dbj|AK064827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F07, full insert sequence Length = 1984 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 cgcgatggtcggcgccggcgtgct 166 |||| ||||||||||||||||||| Sbjct: 355 cgcggtggtcggcgccggcgtgct 378
>dbj|AK063728.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-E02, full insert sequence Length = 1250 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 ggtggtggtgccgcagcagc 372 |||||||||||||||||||| Sbjct: 250 ggtggtggtgccgcagcagc 269
>dbj|AK061743.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F02, full insert sequence Length = 1756 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 cgcgatggtcggcgccggcgtgct 166 |||| ||||||||||||||||||| Sbjct: 358 cgcggtggtcggcgccggcgtgct 381
>dbj|AK061470.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D07, full insert sequence Length = 1797 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 660 cgccgccgtcatgtccttcacctactcc 687
>dbj|AK061448.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-E03, full insert sequence Length = 1725 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 681 cgccgccgtcatgtccttcacctactcc 708
>dbj|AK061444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C11, full insert sequence Length = 1662 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 658 cgccgccgtcatgtccttcacctactcc 685
>dbj|AK060685.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G03, full insert sequence Length = 1835 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 819 cgccgccgtcatgtccttcacctactcc 846
>dbj|AK059325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A01, full insert sequence Length = 1858 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 766 cgccgccgtcatgtccttcacctactcc 793
>gb|AC110174.10| Mus musculus chromosome 3, clone RP23-293K21, complete sequence Length = 253469 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 494 cttcggctcctcccagttcctgctctcc 521 |||| ||||||||||| ||||||||||| Sbjct: 28538 cttcagctcctcccaggtcctgctctcc 28511
>emb|AJ535081.1|OSA535081 Oryza sativa (japonica cultivar-group) mrp11 gene for MRP-like ABC transporter, exons 1-12 Length = 6172 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cggcgccggcgtgctcagcc 171 |||||||||||||||||||| Sbjct: 99 cggcgccggcgtgctcagcc 118
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 140 caccgcgatggtcggcgccggcgtgctc 167 ||||| ||||||||||||||||| |||| Sbjct: 4286053 caccgagatggtcggcgccggcgggctc 4286026
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gcggctgggcctgtgggtgg 357 |||||||||||||||||||| Sbjct: 2009486 gcggctgggcctgtgggtgg 2009467
>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123469 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 87363 cgccgccgtcatgtccttcacctactcc 87336 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 63010 cgccgccgtcatgtccttcacctactcc 63037
>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141053 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 563 cgccgccgtcatgtccctcagctactcc 590 |||||||||||||||| ||| ||||||| Sbjct: 66979 cgccgccgtcatgtccttcacctactcc 67006
>gb|AC102591.14| Mus musculus chromosome 3, clone RP23-336B10, complete sequence Length = 216906 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 494 cttcggctcctcccagttcctgctctcc 521 |||| ||||||||||| ||||||||||| Sbjct: 186847 cttcagctcctcccaggtcctgctctcc 186820
>gb|AC006583.31| Homo sapiens 3 BAC RP11-491D6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 102371 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 cctcaactccatcaccgcca 552 |||||||||||||||||||| Sbjct: 97668 cctcaactccatcaccgcca 97687 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,438,899 Number of Sequences: 3902068 Number of extensions: 4438899 Number of successful extensions: 105964 Number of sequences better than 10.0: 120 Number of HSP's better than 10.0 without gapping: 126 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 102652 Number of HSP's gapped (non-prelim): 3304 length of query: 610 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 587 effective length of database: 17,143,297,704 effective search space: 10063115752248 effective search space used: 10063115752248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
