ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart42a06 |
|---|---|
| Clone Library Name | barley_pub |
>Y5161_ARATH (Q9M015) Protein At5g01610| Length = 170 Score = 127 bits (319), Expect = 2e-29 Identities = 54/132 (40%), Positives = 93/132 (70%) Frame = +1 Query: 184 MEKALTKLGSFTIPRKAKQELSAIGGDISRISSTVEEKAKWVFEKLKGKPNKSLSDLLRE 363 M++ K+GS+ + +KA ++ ++G D++ +S+++E KW+ K+KGK K L +LL+E Sbjct: 1 MDQIFNKVGSYWLGQKANKQFDSVGNDLNSVSTSIEGGTKWLVNKIKGKMQKPLPELLKE 60 Query: 364 YNLPPGLFPRNIICYEYDQTSSRLVVHLAKPCEVSFKDSSMIRYATRVKATLSRGKLSAI 543 Y+LP G+FP + YE+D+ + +L V + CEV +KDSS++++ T V L +GKL+ + Sbjct: 61 YDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDV 120 Query: 544 EGMKTKVVVWVK 579 EG+KTKV++WVK Sbjct: 121 EGIKTKVMIWVK 132
>BARD1_MOUSE (O70445) BRCA1-associated RING domain protein 1 (BARD-1)| Length = 765 Score = 32.0 bits (71), Expect = 1.3 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Frame = +1 Query: 166 TPRKERMEKALTKLGSFTIPRKAKQELSAIGGDISRISST----VEEKAKWVFE-KLKGK 330 +PR +++ +TK+ T P+KAK + + +S+T V + AK K Sbjct: 140 SPRSKKVRYVVTKVSVQTQPQKAKDDKAQEASMYEFVSATPPVAVPKSAKTASRTSAKKH 199 Query: 331 PNKSLSDLLREYNLPP 378 P KS++ + RE NL P Sbjct: 200 PKKSVAKINREENLRP 215
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/82 (29%), Positives = 28/82 (34%), Gaps = 7/82 (8%) Frame = +3 Query: 351 PPTRVQPPSG-------PLPPEHHLLRVRPDELEAGGAPGQALRGELQGLLHDTVRHPRE 509 PP PP P P HH P E+E GG+P G ++R R Sbjct: 994 PPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALG-PQPSLRGWRG 1052 Query: 510 GDPVPGQALGDRGHEDQGGGVG 575 G P P H GG G Sbjct: 1053 GGPSPTPGAPSPSHHGSAGGGG 1074
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 31.2 bits (69), Expect = 2.2 Identities = 23/80 (28%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Frame = +3 Query: 351 PPTRVQPPSG-------PLPPEHHLLRVRPDELEAGGAPGQALRGELQGLLHDTVRHPRE 509 PP PP P P HH P E+E GG+P G ++R R Sbjct: 1002 PPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALG-PQPSLRGWRG 1060 Query: 510 GDPVPGQALGDRGHEDQGGG 569 G P P H GG Sbjct: 1061 GGPSPTSGAPSPSHHSSSGG 1080
>ZBT10_HUMAN (Q96DT7) Zinc finger and BTB domain-containing protein 10 (Zinc| finger protein RIN ZF) Length = 847 Score = 30.8 bits (68), Expect = 2.9 Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 6/99 (6%) Frame = +3 Query: 297 GQMGLREAQRQAKQVPL*PPTRVQPPSGPLPPEH-HLLRVRPDELEAGGAPGQALRGELQ 473 G+ Q Q +Q P P +QPP+G E L + P +LEA P E + Sbjct: 33 GEASAWPPQPQPRQPPPTAPPALQPPNGRGADEEVELEGLEPQDLEASAGPAAGAAEEAK 92 Query: 474 GLL--HDTVRHPREGDPVPGQALGDRGHED---QGGGVG 575 LL D G G L +R +GGG G Sbjct: 93 ELLLPQDAGGPTSLGGGAGGPLLAERNRRTLAFRGGGGG 131
>GLT12_MOUSE (Q8BGT9) Polypeptide N-acetylgalactosaminyltransferase 12 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 12) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 12) (Polypeptide GalNAc transferase 12) (GalNAc-T12) (pp-GaNTas Length = 576 Score = 30.4 bits (67), Expect = 3.8 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +3 Query: 369 PPSGPLPPEHHLLRVRPD-ELEAGGAPGQALRGELQG 476 PP PLP H + RP +A GA G+A+R +LQG Sbjct: 47 PPRTPLPGRHEPVLPRPPLPADALGAHGEAVRLQLQG 83
>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein| kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1243 Score = 30.4 bits (67), Expect = 3.8 Identities = 47/194 (24%), Positives = 64/194 (32%), Gaps = 13/194 (6%) Frame = +3 Query: 27 SSDPGSISTPLSXXXXXXXXXXXXESQRVQSRAAVCLFTRPHAPP----------PHAEE 176 SS P + + PL +Q + S + L P APP P A Sbjct: 913 SSFPSTTAAPLLSLASAFSLAVMTVAQSLLSPSPGLLSQSPPAPPSPLPSLPLPPPVAPG 972 Query: 177 GKDGEGPHQA--RQLHHPPQXXXXXXXXXXXXXXXXXXXXXEGQMGLREAQRQAKQVPL* 350 G++ PH A PP G+ + ++ A+ +PL Sbjct: 973 GQESPSPHTAEVESEASPPPARPLPGEARLAPISEEGKPQLVGRFQVTSSKEPAEPLPL- 1031 Query: 351 PPTRVQPPSGPLPPEHHLLRVRPD-ELEAGGAPGQALRGELQGLLHDTVRHPREGDPVPG 527 PT P P L D E AGG P E + L ++ R EG Sbjct: 1032 QPTSPTLSGSPKPSTPQLTSESSDTEDSAGGGP------ETREALAESDR-AAEGLGAGV 1084 Query: 528 QALGDRGHEDQGGG 569 + GD G E Q GG Sbjct: 1085 EEEGDDGKEPQVGG 1098
>EVL_HUMAN (Q9UI08) Ena/VASP-like protein (Ena/vasodilator stimulated| phosphoprotein-like) Length = 416 Score = 30.4 bits (67), Expect = 3.8 Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 11/86 (12%) Frame = +3 Query: 351 PPTRVQPPSGPLPPEHHLLRVRPDELEAGGAPGQA--------LRGELQGLLHDTVRHPR 506 PP PP+G PP P L AGGA G + L + G V+ P Sbjct: 187 PPPVPPPPTGATPPP-------PPPLPAGGAQGSSHDESSMSGLAAAIAGAKLRRVQRPE 239 Query: 507 E---GDPVPGQALGDRGHEDQGGGVG 575 + G G + D GGG G Sbjct: 240 DASGGSSPSGTSKSDANRASSGGGGG 265
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 30.4 bits (67), Expect = 3.8 Identities = 39/152 (25%), Positives = 48/152 (31%), Gaps = 8/152 (5%) Frame = +3 Query: 144 RPHAPPPHAEE--GKDGEGPHQARQLHHPPQXXXXXXXXXXXXXXXXXXXXXEGQMGLRE 317 +PH PPPH+ + G HQ + H G G Sbjct: 1257 QPHPPPPHSPHTAAQQAAGQHQQQHPQH----------------------QHPGLPGPPP 1294 Query: 318 AQRQAKQVPL*PPTRVQPPSGPLPPEHHLLRVRPDELE----AGGAPGQALRGELQGLLH 485 Q+Q Q PP V P P +H +V P + A GAP G + Sbjct: 1295 PQQQQGQQGQQPPPSVGGGPPPAPQQHGPGQVPPSPQQHVRPAAGAPYPP-----GGSGY 1349 Query: 486 DTVRHPREGDPVPGQ--ALGDRGHEDQGGGVG 575 T G P P Q A G G DQ G Sbjct: 1350 PTPVSRTPGSPYPSQPGAYGQYGSSDQYNATG 1381
>MSPD1_RAT (Q5RJS6) Motile sperm domain-containing protein 1| Length = 213 Score = 30.4 bits (67), Expect = 3.8 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +1 Query: 355 LREYNLPPGLFPRNIICYEYDQTSSRLVVHLAKPCEVSFK 474 L E NLP +FP +I Y DQ++ + V+ L P E + K Sbjct: 10 LVEGNLPVFVFPTELIFYADDQSTHKQVLTLYNPYEFALK 49
>MSPD1_PONPY (Q5RCC7) Motile sperm domain-containing protein 1| Length = 213 Score = 30.4 bits (67), Expect = 3.8 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +1 Query: 355 LREYNLPPGLFPRNIICYEYDQTSSRLVVHLAKPCEVSFK 474 L E NLP +FP +I Y DQ++ + V+ L P E + K Sbjct: 10 LVEGNLPVFVFPTELIFYADDQSTHKQVLTLYNPYEFALK 49
>MSPD1_MOUSE (Q8VEL0) Motile sperm domain-containing protein 1| Length = 213 Score = 30.4 bits (67), Expect = 3.8 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +1 Query: 355 LREYNLPPGLFPRNIICYEYDQTSSRLVVHLAKPCEVSFK 474 L E NLP +FP +I Y DQ++ + V+ L P E + K Sbjct: 10 LVEGNLPVFVFPTELIFYADDQSTHKQVLTLYNPYEFALK 49
>MSPD1_HUMAN (Q9UJG1) Motile sperm domain-containing protein 1| Length = 213 Score = 30.4 bits (67), Expect = 3.8 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +1 Query: 355 LREYNLPPGLFPRNIICYEYDQTSSRLVVHLAKPCEVSFK 474 L E NLP +FP +I Y DQ++ + V+ L P E + K Sbjct: 10 LVEGNLPVFVFPTELIFYADDQSTHKQVLTLYNPYEFALK 49
>EVL_PONPY (Q5R896) Ena/VASP-like protein (Ena/vasodilator stimulated| phosphoprotein-like) Length = 422 Score = 30.4 bits (67), Expect = 3.8 Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 11/86 (12%) Frame = +3 Query: 351 PPTRVQPPSGPLPPEHHLLRVRPDELEAGGAPGQA--------LRGELQGLLHDTVRHPR 506 PP PP+G PP P L AGGA G + L + G V+ P Sbjct: 193 PPPVPPPPTGATPPP-------PPPLPAGGAQGSSHDESSVSGLAAAIAGAKLRRVQRPE 245 Query: 507 E---GDPVPGQALGDRGHEDQGGGVG 575 + G G + D GGG G Sbjct: 246 DASGGSSPSGTSKSDANRASSGGGGG 271
>RLM1_YEAST (Q12224) Transcription factor RLM1| Length = 676 Score = 30.0 bits (66), Expect = 5.0 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +3 Query: 372 PSGPLPPEHHLLRVRPDELEAGGAPGQALRGELQGLLHDTV 494 P LPP HL R++PD L+ P Q + + H ++ Sbjct: 182 PENALPPLQHLKRLKPDPLQISRTPQQQQQQNISRPYHSSM 222
>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding| SR-like protein RA4) Length = 1147 Score = 30.0 bits (66), Expect = 5.0 Identities = 18/67 (26%), Positives = 27/67 (40%) Frame = +3 Query: 372 PSGPLPPEHHLLRVRPDELEAGGAPGQALRGELQGLLHDTVRHPREGDPVPGQALGDRGH 551 P GP PP + + P P + G + DT + G+P+P G RG+ Sbjct: 740 PPGPPPPITPPVSIPPPHTPPISIPNSTIAG----INEDTTKDLSIGNPIPTVVSGARGN 795 Query: 552 EDQGGGV 572 + G V Sbjct: 796 AESGDSV 802
>MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle| myosin heavy chain IIc) (NMHC II-C) Length = 1995 Score = 30.0 bits (66), Expect = 5.0 Identities = 19/69 (27%), Positives = 25/69 (36%) Frame = +3 Query: 351 PPTRVQPPSGPLPPEHHLLRVRPDELEAGGAPGQALRGELQGLLHDTVRHPREGDPVPGQ 530 P + P GP+P P AGG PG +++ V P E Sbjct: 9 PGRKAPPRPGPVPEAAQPFLFTPRGPSAGGGPGSGTSPQVEWTARRLVWVPSELHGFEAA 68 Query: 531 ALGDRGHED 557 AL D G E+ Sbjct: 69 ALRDEGEEE 77
>VE4_HPV5B (P26550) Probable protein E4| Length = 245 Score = 29.6 bits (65), Expect = 6.5 Identities = 21/72 (29%), Positives = 27/72 (37%) Frame = +3 Query: 336 QVPL*PPTRVQPPSGPLPPEHHLLRVRPDELEAGGAPGQALRGELQGLLHDTVRHPREGD 515 + P PT + PP GP P L + + G P GE++G HP Sbjct: 93 RAPSPKPTPLGPPPGPGPRRSARLGPLQADRDPGEGPQVPAEGEVEGHPGGDQGHPPPTP 152 Query: 516 PVPGQALGDRGH 551 P P G GH Sbjct: 153 PAPHN--GHSGH 162
>ZN499_HUMAN (Q96K62) Zinc finger protein 499| Length = 511 Score = 29.6 bits (65), Expect = 6.5 Identities = 33/114 (28%), Positives = 38/114 (33%), Gaps = 24/114 (21%) Frame = +3 Query: 309 LREAQRQAKQVPL*PPTRVQPPSGPLPPEH---HLLRVRPDELEAGGAPG--------QA 455 + A+ P PT V PP P H HLL RP G PG Q Sbjct: 122 IARARAPGTSAPTPLPTPVPPPLAPAQLRHRLRHLLAARPP-----GHPGAAHSRKQRQP 176 Query: 456 LRGELQGLLHDTVRHPREGDPVPGQALGDRGHED-------------QGGGVGE 578 R +L + DP A DRG ED +GGG GE Sbjct: 177 ARLQLPAPPTPAKAEGPDADPSLSAAPDDRGDEDDEESDDETDGEDGEGGGPGE 230
>TAT2_YEAST (P38967) Tryptophan permease (Tryptophan amino acid transporter)| Length = 592 Score = 29.6 bits (65), Expect = 6.5 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = -3 Query: 212 LPSLVRAFSILSFLGVGRRCVWTREQTXXXXXXXXXXLWHWG 87 LPS+V A ++S L VG C++ +T W +G Sbjct: 356 LPSIVNAVILISVLSVGNSCIFASSRTLCSMAHQGLIPWWFG 397
>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2| Length = 1514 Score = 29.6 bits (65), Expect = 6.5 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 10/43 (23%) Frame = +3 Query: 357 TRVQPPSGPLPP-------EHHLLR---VRPDELEAGGAPGQA 455 T++ PP GP P E++L + ++P+E EA G+P +A Sbjct: 423 TKISPPPGPCPDPDPNQPSEYYLFQKPDIQPEEQEAVGSPAEA 465
>DNAK_PORGI (Q9ZAD3) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 640 Score = 29.6 bits (65), Expect = 6.5 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Frame = +1 Query: 292 EKAKWVFEKLKGK-PNKSLSDLLREYNLPPGLFPRNIICY----EYDQTSSRLVVHLAKP 456 ++ K EK K + + S +++ Y +P P++++ +++Q + RL+ P Sbjct: 254 QRLKEAAEKAKIELSSTSSTEINLPYIMPVNGIPKHLVMTLTRAKFEQLADRLIQACVAP 313 Query: 457 CEVSFKDSSMIR 492 CE + KD+ M R Sbjct: 314 CETALKDAGMSR 325
>OTU6A_MOUSE (Q6IE21) OTU domain-containing protein 6A (Hin-6 protease)| Length = 290 Score = 29.3 bits (64), Expect = 8.5 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Frame = +1 Query: 172 RKERMEKALTKLGSFTIPRKAKQELSAIGGDISRISSTVEEKAKWVFEKLKGKPNKSLSD 351 R++R +A + ++P+ K + DISR+ + +E++ K EK P+ S+ Sbjct: 17 REKRELQAHIQTLKASVPKNDKGRRKQMLADISRLEAEMEQRHKQELEKFGENPDSSVDS 76 Query: 352 LLREY------NLPP 378 + + N+PP Sbjct: 77 VTADLEKMNLENMPP 91
>MURD_PSEU2 (Q4ZNY8) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 448 Score = 29.3 bits (64), Expect = 8.5 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Frame = -3 Query: 335 FGLPLSFSKTHLAFS-STVLEMREMSPPMAESSCFALRGM-----VKLPSLVRAFSILSF 174 FGL + +LAF ++ +RE+ A + AL + V LP S+ F Sbjct: 244 FGLREENGEKYLAFQFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREF 303 Query: 173 LGVGRRCVWTRE 138 G+ RC W RE Sbjct: 304 TGLEHRCQWLRE 315
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 29.3 bits (64), Expect = 8.5 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 12/81 (14%) Frame = +3 Query: 351 PPTRVQPPSGPLPP---------EHHLLRVR---PDELEAGGAPGQALRGELQGLLHDTV 494 PP PPS P PP HLL R PD+ E G+ GEL+ + V Sbjct: 17 PPPSPPPPSTPSPPPCSPDGRAATPHLLHHRLPLPDDRE----DGELEEGELEDDGAEEV 72 Query: 495 RHPREGDPVPGQALGDRGHED 557 + P G + G++ H D Sbjct: 73 QDPPGGQERSRKEKGEKHHSD 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,855,640 Number of Sequences: 219361 Number of extensions: 1481362 Number of successful extensions: 7563 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 6698 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7505 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
