ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart42a06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 232 bits (117), Expect = 1e-57 Identities = 222/257 (86%) Strand = Plus / Plus Query: 324 aggcaagccaaacaagtccctctctgacctcctacgcgagtacaacctccctccgggcct 383 |||||| ||||||||||| |||||||| ||||| || ||||||||||| ||||| ||||| Sbjct: 5740151 aggcaaaccaaacaagtcactctctgatctcctgcgagagtacaaccttcctccaggcct 5740210 Query: 384 cttcccccggaacatcatctgctacgagtacgaccagacgagctcgaggctggtggtgca 443 |||||| ||||| |||||||||||||| || || || || ||||||| ||| || ||||| Sbjct: 5740211 cttccctcggaatatcatctgctacgaatatgatcaaacaagctcgaagcttgttgtgca 5740270 Query: 444 cctggccaagccctgcgaggtgagcttcaaggactcctccatgatacggtacgccacccg 503 |||| | |||||||| ||||||||||||||||| || ||| ||||||||||||| | || Sbjct: 5740271 cctgtctaagccctgtgaggtgagcttcaaggattcatccgtgatacggtacgcgcctcg 5740330 Query: 504 cgtgaaggcgaccctgtcccggggcaagctctcggcgatcgagggcatgaagaccaaggt 563 || |||| ||| ||||| || ||||||||||| |||||||| ||||||||||||||||| Sbjct: 5740331 tgtcaaggtgactctgtctcgaggcaagctctccgcgatcgaaggcatgaagaccaaggt 5740390 Query: 564 ggtggtgtgggtgaagg 580 ||| ||||||||||||| Sbjct: 5740391 ggttgtgtgggtgaagg 5740407 Score = 115 bits (58), Expect = 2e-22 Identities = 79/86 (91%) Strand = Plus / Plus Query: 184 atggagaaggccctcaccaagctcggcagcttcaccatcccccgcaaggcaaagcaggag 243 ||||||||||| ||||||||| ||||||||||||||||| |||| ||||| ||||||||| Sbjct: 5738371 atggagaaggcgctcaccaagatcggcagcttcaccatctcccggaaggccaagcaggag 5738430 Query: 244 ctctccgccatcggcggcgacatctc 269 ||||||||||| |||||||| ||||| Sbjct: 5738431 ctctccgccattggcggcgatatctc 5738456 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 275 tctcaagcaccgtggaggagaaggccaaatgggtcttcgagaagctcaaagg 326 |||| ||||| || ||||||||||| |||||||| ||||| ||||||||||| Sbjct: 5738972 tctcgagcactgttgaggagaaggcgaaatgggttttcgacaagctcaaagg 5739023
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0021B21, from chromosome 3, complete sequence Length = 166777 Score = 232 bits (117), Expect = 1e-57 Identities = 222/257 (86%) Strand = Plus / Minus Query: 324 aggcaagccaaacaagtccctctctgacctcctacgcgagtacaacctccctccgggcct 383 |||||| ||||||||||| |||||||| ||||| || ||||||||||| ||||| ||||| Sbjct: 91020 aggcaaaccaaacaagtcactctctgatctcctgcgagagtacaaccttcctccaggcct 90961 Query: 384 cttcccccggaacatcatctgctacgagtacgaccagacgagctcgaggctggtggtgca 443 |||||| ||||| |||||||||||||| || || || || ||||||| ||| || ||||| Sbjct: 90960 cttccctcggaatatcatctgctacgaatatgatcaaacaagctcgaagcttgttgtgca 90901 Query: 444 cctggccaagccctgcgaggtgagcttcaaggactcctccatgatacggtacgccacccg 503 |||| | |||||||| ||||||||||||||||| || ||| ||||||||||||| | || Sbjct: 90900 cctgtctaagccctgtgaggtgagcttcaaggattcatccgtgatacggtacgcgcctcg 90841 Query: 504 cgtgaaggcgaccctgtcccggggcaagctctcggcgatcgagggcatgaagaccaaggt 563 || |||| ||| ||||| || ||||||||||| |||||||| ||||||||||||||||| Sbjct: 90840 tgtcaaggtgactctgtctcgaggcaagctctccgcgatcgaaggcatgaagaccaaggt 90781 Query: 564 ggtggtgtgggtgaagg 580 ||| ||||||||||||| Sbjct: 90780 ggttgtgtgggtgaagg 90764 Score = 115 bits (58), Expect = 2e-22 Identities = 79/86 (91%) Strand = Plus / Minus Query: 184 atggagaaggccctcaccaagctcggcagcttcaccatcccccgcaaggcaaagcaggag 243 ||||||||||| ||||||||| ||||||||||||||||| |||| ||||| ||||||||| Sbjct: 92800 atggagaaggcgctcaccaagatcggcagcttcaccatctcccggaaggccaagcaggag 92741 Query: 244 ctctccgccatcggcggcgacatctc 269 ||||||||||| |||||||| ||||| Sbjct: 92740 ctctccgccattggcggcgatatctc 92715 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 275 tctcaagcaccgtggaggagaaggccaaatgggtcttcgagaagctcaaagg 326 |||| ||||| || ||||||||||| |||||||| ||||| ||||||||||| Sbjct: 92199 tctcgagcactgttgaggagaaggcgaaatgggttttcgacaagctcaaagg 92148
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 232 bits (117), Expect = 1e-57 Identities = 222/257 (86%) Strand = Plus / Plus Query: 324 aggcaagccaaacaagtccctctctgacctcctacgcgagtacaacctccctccgggcct 383 |||||| ||||||||||| |||||||| ||||| || ||||||||||| ||||| ||||| Sbjct: 5739364 aggcaaaccaaacaagtcactctctgatctcctgcgagagtacaaccttcctccaggcct 5739423 Query: 384 cttcccccggaacatcatctgctacgagtacgaccagacgagctcgaggctggtggtgca 443 |||||| ||||| |||||||||||||| || || || || ||||||| ||| || ||||| Sbjct: 5739424 cttccctcggaatatcatctgctacgaatatgatcaaacaagctcgaagcttgttgtgca 5739483 Query: 444 cctggccaagccctgcgaggtgagcttcaaggactcctccatgatacggtacgccacccg 503 |||| | |||||||| ||||||||||||||||| || ||| ||||||||||||| | || Sbjct: 5739484 cctgtctaagccctgtgaggtgagcttcaaggattcatccgtgatacggtacgcgcctcg 5739543 Query: 504 cgtgaaggcgaccctgtcccggggcaagctctcggcgatcgagggcatgaagaccaaggt 563 || |||| ||| ||||| || ||||||||||| |||||||| ||||||||||||||||| Sbjct: 5739544 tgtcaaggtgactctgtctcgaggcaagctctccgcgatcgaaggcatgaagaccaaggt 5739603 Query: 564 ggtggtgtgggtgaagg 580 ||| ||||||||||||| Sbjct: 5739604 ggttgtgtgggtgaagg 5739620 Score = 115 bits (58), Expect = 2e-22 Identities = 79/86 (91%) Strand = Plus / Plus Query: 184 atggagaaggccctcaccaagctcggcagcttcaccatcccccgcaaggcaaagcaggag 243 ||||||||||| ||||||||| ||||||||||||||||| |||| ||||| ||||||||| Sbjct: 5737584 atggagaaggcgctcaccaagatcggcagcttcaccatctcccggaaggccaagcaggag 5737643 Query: 244 ctctccgccatcggcggcgacatctc 269 ||||||||||| |||||||| ||||| Sbjct: 5737644 ctctccgccattggcggcgatatctc 5737669 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 275 tctcaagcaccgtggaggagaaggccaaatgggtcttcgagaagctcaaagg 326 |||| ||||| || ||||||||||| |||||||| ||||| ||||||||||| Sbjct: 5738185 tctcgagcactgttgaggagaaggcgaaatgggttttcgacaagctcaaagg 5738236
>dbj|AK058684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A07, full insert sequence Length = 463 Score = 149 bits (75), Expect = 1e-32 Identities = 156/183 (85%) Strand = Plus / Plus Query: 398 tcatctgctacgagtacgaccagacgagctcgaggctggtggtgcacctggccaagccct 457 |||||||||||| || || || || ||||||| ||| || ||||||||| | ||||||| Sbjct: 1 tcatctgctacggatatgatcaaacaagctcgaagcttgttgtgcacctgtctaagccct 60 Query: 458 gcgaggtgagcttcaaggactcctccatgatacggtacgccacccgcgtgaaggcgaccc 517 | ||||||||||||||||| || ||| ||||||||||||| | || || |||| ||| | Sbjct: 61 gtgaggtgagcttcaaggattcatccgtgatacggtacgcgcctcgtgtcaaggtgactc 120 Query: 518 tgtcccggggcaagctctcggcgatcgagggcatgaagaccaaggtggtggtgtgggtga 577 |||| || ||||||||||| |||||||| |||||||||||||||||||| |||||||||| Sbjct: 121 tgtctcgaggcaagctctccgcgatcgaaggcatgaagaccaaggtggttgtgtgggtga 180 Query: 578 agg 580 ||| Sbjct: 181 agg 183
>gb|AC146554.5| Medicago truncatula clone mth2-9l7, complete sequence Length = 135334 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 544 gagggcatgaagaccaaggtggtggtgtgggtgaa 578 ||||| ||||||||||| ||| ||||||||||||| Sbjct: 1650 gagggtatgaagaccaaagtgttggtgtgggtgaa 1684
>gb|AC108724.4| Homo sapiens 3 BAC RP11-413E6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186773 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 178 gaaaggatggagaaggccctca 199 |||||||||||||||||||||| Sbjct: 77145 gaaaggatggagaaggccctca 77166
>gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, complete sequence Length = 191144 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 178 gaaaggatggagaaggccctca 199 |||||||||||||||||||||| Sbjct: 158632 gaaaggatggagaaggccctca 158653
>dbj|AK098258.1| Homo sapiens cDNA FLJ40939 fis, clone UTERU2008077 Length = 2127 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 178 gaaaggatggagaaggccctca 199 |||||||||||||||||||||| Sbjct: 1923 gaaaggatggagaaggccctca 1902
>emb|AL592170.21| Human DNA sequence from clone RP11-298A19 on chromosome 22, complete sequence Length = 186861 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 178 gaaaggatggagaaggccctca 199 |||||||||||||||||||||| Sbjct: 77190 gaaaggatggagaaggccctca 77211
>dbj|AB021312.1| Dunaliella salina CAO mRNA for chlorophyll b synthase, complete cds Length = 1869 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 559 aaggtggtggtgtgggtgaagg 580 |||||||||||||||||||||| Sbjct: 890 aaggtggtggtgtgggtgaagg 869
>gb|BT018200.1| Zea mays clone EL01N0559D08.c mRNA sequence Length = 1076 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 541 atcgagggcatgaagaccaaggtggtggt 569 |||||||||||||||||||| ||| |||| Sbjct: 573 atcgagggcatgaagaccaaagtgctggt 601
>ref|XM_322430.1| Neurospora crassa OR74A hypothetical protein (NCU00345.1) partial mRNA Length = 3378 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 gagaagctcaaaggcaagcca 333 ||||||||||||||||||||| Sbjct: 1635 gagaagctcaaaggcaagcca 1615
>ref|XM_952723.1| Neurospora crassa OR74A hypothetical protein (NCU00345.1) partial mRNA Length = 3378 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 gagaagctcaaaggcaagcca 333 ||||||||||||||||||||| Sbjct: 1635 gagaagctcaaaggcaagcca 1615
>emb|AL356257.14| Human DNA sequence from clone RP11-789G22 on chromosome 13 Contains the 5' end of the ABCC4 gene for ATP-binding cassette, sub-family C (CFTR/MRP), member4, a novel gene and a CpG island, complete sequence Length = 193483 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 ccctggttccatatccactcc 55 ||||||||||||||||||||| Sbjct: 75916 ccctggttccatatccactcc 75896
>gb|AC020658.6|AC020658 Homo sapiens chromosome 15 clone RP11-133K1 map 15q14, complete sequence Length = 159007 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 ccagagtcccagcgagtccag 116 ||||||||||||||||||||| Sbjct: 65926 ccagagtcccagcgagtccag 65946
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 ccgccatcggcggcgacatct 268 ||||||||||||||||||||| Sbjct: 815334 ccgccatcggcggcgacatct 815354
>gb|AY105465.1| Zea mays PCO139210 mRNA sequence Length = 790 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 541 atcgagggcatgaagaccaaggtggtggt 569 |||||||||||||||||||| ||| |||| Sbjct: 761 atcgagggcatgaagaccaaagtgctggt 789
>gb|AY706111.1| Philautus sp. FB-3 12S ribosomal RNA gene, partial sequence; mitochondrial Length = 369 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 cacccacacccccagtgccagagt 102 ||||||||||||||| |||||||| Sbjct: 16 cacccacacccccagcgccagagt 39
>ref|XM_361856.1| Magnaporthe grisea 70-15 hypothetical protein (MG04330.4) partial mRNA Length = 2202 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 catctcgcgcatctcaagca 283 |||||||||||||||||||| Sbjct: 2172 catctcgcgcatctcaagca 2191
>gb|AC131716.2| Mus musculus BAC clone RP23-183O3 from 5, complete sequence Length = 223812 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gaggaaggaaaggatggaga 190 |||||||||||||||||||| Sbjct: 88119 gaggaaggaaaggatggaga 88138
>gb|DP000038.2| Colobus guereza target 106 genomic scaffold Length = 481828 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gaggaaggaaaggatggaga 190 |||||||||||||||||||| Sbjct: 118272 gaggaaggaaaggatggaga 118291
>gb|AC114268.2| Homo sapiens chromosome 19 clone LLNLR-244A1, complete sequence Length = 25329 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 gtggtgcacctggccaagcc 455 |||||||||||||||||||| Sbjct: 14361 gtggtgcacctggccaagcc 14380
>gb|AF419985.1| Closterium spinosporum var. malaysiense internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 1879 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ctccctccgggcctcttccc 389 |||||||||||||||||||| Sbjct: 1470 ctccctccgggcctcttccc 1451
>emb|AL121721.20|HS1096J16 Human DNA sequence from clone RP5-1096J16 on chromosome 20 Contains part of the C20orf26 gene, complete sequence Length = 55114 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 agggcatgaagaccaaggtg 564 |||||||||||||||||||| Sbjct: 34197 agggcatgaagaccaaggtg 34178
>emb|AL031591.19|HS353E16 Human DNA sequence from clone RP3-353E16 on chromosome 22q11.22-12.3, complete sequence Length = 189765 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 ggttccatatccactccactgtct 62 |||||||| ||||||||||||||| Sbjct: 55007 ggttccatctccactccactgtct 55030
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cggcggcgacatctcgcgca 274 |||||||||||||||||||| Sbjct: 2180098 cggcggcgacatctcgcgca 2180117
>gb|DP000036.1| Papio anubis target 106 genomic scaffold Length = 492848 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gaggaaggaaaggatggaga 190 |||||||||||||||||||| Sbjct: 7275 gaggaaggaaaggatggaga 7294
>gb|DP000043.1| Macaca mulatta target 106 genomic scaffold Length = 373358 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gaggaaggaaaggatggaga 190 |||||||||||||||||||| Sbjct: 5579 gaggaaggaaaggatggaga 5598
>gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold Length = 583711 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gaggaaggaaaggatggaga 190 |||||||||||||||||||| Sbjct: 134733 gaggaaggaaaggatggaga 134752
>gb|AC000105.41| Homo sapiens Chromosome 22q11.2 MDR Region, complete sequence Length = 90223 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 ggttccatatccactccactgtct 62 |||||||| ||||||||||||||| Sbjct: 78861 ggttccatctccactccactgtct 78884
>gb|AC004032.7| Homo sapiens Chromosome 22q11.2 BAC Clone b437g10 In BCRL2-GGT Region, complete sequence Length = 200685 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 ggttccatatccactccactgtct 62 |||||||| ||||||||||||||| Sbjct: 168969 ggttccatctccactccactgtct 168992
>gb|AC022116.5|AC022116 Homo sapiens chromosome 5 clone CTC-502J4, complete sequence Length = 171829 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 ccaaacaagtccctctctgacctc 354 ||||| |||||||||||||||||| Sbjct: 131110 ccaaagaagtccctctctgacctc 131087
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 ctccgccatcggcggcgacatctc 269 |||||||| ||||||||||||||| Sbjct: 25622745 ctccgccaccggcggcgacatctc 25622768
>gb|AC007083.11|AC007083 Drosophila melanogaster, chromosome 2L, region 33A-, BAC clone BACR43K24, complete sequence Length = 188067 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 gttccatatccactccactg 59 |||||||||||||||||||| Sbjct: 62774 gttccatatccactccactg 62793
>gb|AC011491.7| Homo sapiens chromosome 19 clone CTB-180A7, complete sequence Length = 118820 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 gtggtgcacctggccaagcc 455 |||||||||||||||||||| Sbjct: 51 gtggtgcacctggccaagcc 70
>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0594D10 Length = 143200 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 ctccgccatcggcggcgacatctc 269 |||||||| ||||||||||||||| Sbjct: 76718 ctccgccaccggcggcgacatctc 76741
>emb|AL671898.7| Mouse DNA sequence from clone RP23-194K1 on chromosome X, complete sequence Length = 212406 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gaaggaaaggatggagaagg 193 |||||||||||||||||||| Sbjct: 135278 gaaggaaaggatggagaagg 135259
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 ctccgccatcggcggcgaca 265 |||||||||||||||||||| Sbjct: 1170831 ctccgccatcggcggcgaca 1170850
>gb|AF146191.1|AF146191 Homo sapiens FRG1 (FRG1) gene, complete cds; 5S ribosomal RNA gene, complete sequence; TUB4q and TIG2 pseudogenes, complete sequence Length = 133974 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gaaaggatggagaaggccct 197 |||||||||||||||||||| Sbjct: 104057 gaaaggatggagaaggccct 104076
>gb|AE003632.4| Drosophila melanogaster chromosome 2L, section 41 of 83 of the complete sequence Length = 244231 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 gttccatatccactccactg 59 |||||||||||||||||||| Sbjct: 10692 gttccatatccactccactg 10711
>gb|AC174471.2| Mus musculus BAC clone RP23-360P3 from chromosome 17, complete sequence Length = 218275 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 gaggaaggaaaggatggagaaggc 194 |||||||||||||| ||||||||| Sbjct: 24835 gaggaaggaaaggagggagaaggc 24812
>gb|AC147644.3| Gallus gallus BAC clone CH261-77K20 from chromosome unknown, complete sequence Length = 191888 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 aggaaggaaaggatggagaa 191 |||||||||||||||||||| Sbjct: 132052 aggaaggaaaggatggagaa 132033
>emb|AL808106.7| Mouse DNA sequence from clone RP23-281P6 on chromosome 2, complete sequence Length = 201419 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 aaggcaaagcaggagctctc 248 |||||||||||||||||||| Sbjct: 84685 aaggcaaagcaggagctctc 84666
>emb|AL606933.4| Mouse DNA sequence from clone RP23-168M5 on chromosome 4, complete sequence Length = 197552 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 caagtccctctctgacctcc 355 |||||||||||||||||||| Sbjct: 103937 caagtccctctctgacctcc 103956 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,838,358 Number of Sequences: 3902068 Number of extensions: 4838358 Number of successful extensions: 89519 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89262 Number of HSP's gapped (non-prelim): 257 length of query: 580 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 557 effective length of database: 17,143,297,704 effective search space: 9548816821128 effective search space used: 9548816821128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
