ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart41h03 |
|---|---|
| Clone Library Name | barley_pub |
>PLCF_PONPY (Q5R6J7) 1-acyl-sn-glycerol-3-phosphate acyltransferase zeta| precursor (EC 2.3.1.51) (1-AGP acyltransferase 6) (1-AGPAT 6) (Lysophosphatidic acid acyltransferase-zeta) (LPAAT-zeta) Length = 456 Score = 41.6 bits (96), Expect = 0.002 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 12/125 (9%) Frame = +1 Query: 220 DLPDISPVLTEAAGAIVDDSFTRCFKSNSPEPWNW-----------NIYLFPLWCLGVVI 366 +L DI + I+DD T+ F + E WN ++ L LW LGV+I Sbjct: 111 ELSDIFYFCRKGMETIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRLTVLWGLGVLI 170 Query: 367 RYGXXXXXXXXXXXXGWMAFFTAFFPVHFLMNGKNKLKSKIERKLVEMMC-SVFVASWTG 543 RY G V +L NG+ K + K V +MC + V + T Sbjct: 171 RYCFLLPLRIALAFTGISLLVVGTTVVGYLPNGRFK---EFMSKHVHLMCYRICVRALTA 227 Query: 544 VIKYH 558 +I YH Sbjct: 228 IITYH 232
>PLCF_HUMAN (Q86UL3) 1-acyl-sn-glycerol-3-phosphate acyltransferase zeta| precursor (EC 2.3.1.51) (1-AGP acyltransferase 6) (1-AGPAT 6) (Lysophosphatidic acid acyltransferase-zeta) (LPAAT-zeta) Length = 456 Score = 41.6 bits (96), Expect = 0.002 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 12/125 (9%) Frame = +1 Query: 220 DLPDISPVLTEAAGAIVDDSFTRCFKSNSPEPWNW-----------NIYLFPLWCLGVVI 366 +L DI + I+DD T+ F + E WN ++ L LW LGV+I Sbjct: 111 ELSDIFYFCRKGMETIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRLTVLWGLGVLI 170 Query: 367 RYGXXXXXXXXXXXXGWMAFFTAFFPVHFLMNGKNKLKSKIERKLVEMMC-SVFVASWTG 543 RY G V +L NG+ K + K V +MC + V + T Sbjct: 171 RYCFLLPLRIALAFTGISLLVVGTTVVGYLPNGRFK---EFMSKHVHLMCYRICVRALTA 227 Query: 544 VIKYH 558 +I YH Sbjct: 228 IITYH 232
>PLCF_MOUSE (Q8K2C8) 1-acyl-sn-glycerol-3-phosphate acyltransferase zeta| precursor (EC 2.3.1.51) (1-AGP acyltransferase 6) (1-AGPAT 6) (Lysophosphatidic acid acyltransferase-zeta) (LPAAT-zeta) Length = 456 Score = 40.4 bits (93), Expect = 0.004 Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 12/132 (9%) Frame = +1 Query: 220 DLPDISPVLTEAAGAIVDDSFTRCFKSNSPEPWNW-----------NIYLFPLWCLGVVI 366 +L DI + I+DD T+ F + E WN ++ L LW LGV+I Sbjct: 111 ELSDIFYFCRKGMETIMDDEVTKRFSAEELESWNLLSRTNYNFQYISLRLTILWGLGVLI 170 Query: 367 RYGXXXXXXXXXXXXGWMAFFTAFFPVHFLMNGKNKLKSKIERKLVEMMC-SVFVASWTG 543 RY G V +L NG+ K + K V +MC + V + T Sbjct: 171 RYCFLLPLRIALAFTGIGLLVVGTTMVGYLPNGRFK---EFLSKHVHLMCYRICVRALTA 227 Query: 544 VIKYHGPRPSSR 579 +I YH + R Sbjct: 228 IITYHNRKNRPR 239
>APBA3_MOUSE (O88888) Amyloid beta A4 precursor protein-binding family A member| 3 (Neuron-specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma) Length = 571 Score = 34.7 bits (78), Expect = 0.21 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Frame = +1 Query: 172 PADSLPQEP----PRTLTLRDLPDISPVLTEAAGAIVDDSFTRCFKSNSPEPW 318 PA S+PQ+P PR L + PD P E A A DS + S+SPEPW Sbjct: 123 PAQSVPQDPAQTAPRLLQPPEDPDGDPGWMEGASAEPADSRS---SSSSPEPW 172
>LCNCL_LACLA (Q9CJB8) Lactococcin transport/processing ATP-binding protein| lcnC-like (EC 3.4.22.-) Length = 715 Score = 31.2 bits (69), Expect = 2.3 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Frame = +1 Query: 439 FPVHFLMNGKNKLKSKIER-----KLVEMMCSVFVASWTGVIKYHGPRPSSRP 582 +P ++++ G NK I K+ ++ VF++ WTG+ + P PS +P Sbjct: 94 YPHYYVITGANKNSVFIADPDPTVKMTKLSKEVFLSEWTGISLFLSPTPSYQP 146
>YCR6_YEAST (P25353) Hypothetical protein YCR026C| Length = 742 Score = 30.8 bits (68), Expect = 3.0 Identities = 20/69 (28%), Positives = 33/69 (47%) Frame = +1 Query: 121 WEKMASALDAPNLDDYLPADSLPQEPPRTLTLRDLPDISPVLTEAAGAIVDDSFTRCFKS 300 WE + LD DY+ L + P ++L+D +I+ V +I +D +T Sbjct: 430 WEDL---LDEKLRKDYVSHAYL-EGPMMAISLKDSGNINEVYHNLKTSIDEDKYTVYVNG 485 Query: 301 NSPEPWNWN 327 N P+ WN+N Sbjct: 486 NFPKEWNFN 494
>PIGR_RABIT (P01832) Polymeric-immunoglobulin receptor precursor (Poly-Ig| receptor) (PIGR) [Contains: Secretory component] Length = 773 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -1 Query: 271 RRWHPLPR*ALARCPEDRAG*ESWGVPAGASPRGGNR 161 R+W+PL R CPE R E V + P G+R Sbjct: 595 RQWYPLSRKLRTSCPEPRLLAEEVAVQSAEDPASGSR 631
>RL17_BUCAI (P57565) 50S ribosomal protein L17| Length = 130 Score = 29.3 bits (64), Expect = 8.7 Identities = 22/79 (27%), Positives = 37/79 (46%) Frame = +3 Query: 219 RSSGHLASAHRGSGCHRR*FIHTLLQVKFSGAMELEHLLVPIMVLGSSHKIWTAVSAKVL 398 RSS HL S + C F H +++ S A EL ++ PI+ L KI T +++ Sbjct: 12 RSSTHLNSMLKNMACSL--FTHEVIKTTLSKAKELRRIVEPIITLS---KIDTVSRRRLV 66 Query: 399 NTCTRMDGLLYGFFSRAFP 455 + R + ++ F + P Sbjct: 67 FSRIRDNAIVAKLFKKLGP 85
>SYFB_BARQU (Q6G0Y3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 804 Score = 29.3 bits (64), Expect = 8.7 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 267 DGTRCLGEHWRDVRKIAQGESP 202 D + CLG WR+VR I G SP Sbjct: 212 DASLCLGFAWREVRNIQNGVSP 233 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,686,204 Number of Sequences: 219361 Number of extensions: 1389877 Number of successful extensions: 3874 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3725 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3867 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
