ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart41h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104024.1| Zea mays PCO092230 mRNA sequence 303 3e-79
2ref|XM_478533.1| Oryza sativa (japonica cultivar-group), mRNA 204 2e-49
3dbj|AK067845.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 143 7e-31
5dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic D... 143 7e-31
6gb|BT013293.1| Lycopersicon esculentum clone 134908R, mRNA sequence 84 6e-13
7ref|NM_125455.2| Arabidopsis thaliana acyltransferase AT5G60620 ... 52 0.002
8gb|BT006033.1| Arabidopsis thaliana clone U51225 unknown protein... 52 0.002
9emb|BX830392.1|CNS09ZYY Arabidopsis thaliana Full-length cDNA Co... 52 0.002
10dbj|AK118869.1| Arabidopsis thaliana At5g60620 mRNA for unknown ... 52 0.002
11gb|AC159873.11| Medicago truncatula clone mth2-46p15, complete s... 48 0.033
12gb|AC135801.24| Medicago truncatula clone mth2-23o16, complete s... 48 0.033
13gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 44 0.51
14gb|AC102044.7| Mus musculus chromosome 9, clone RP23-303N8, comp... 44 0.51
15emb|V01464.1|XXMU02 Bacteriophage Mu genome left end encoding th... 44 0.51
16gb|AF083977.1| Bacteriophage Mu, complete genome 44 0.51
17gb|AY860420.1| Cloning vector MuNXKan, complete sequence 44 0.51
18gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 44 0.51
19gb|M15949.1|SYNPMUEND Synthetic Bacteriophage Mu left and right ... 44 0.51
20gb|M34919.1|PMUNE1 Bacteriophage mu genomic left end 44 0.51
21gb|M64097.1|PMULEFTEN Bacteriophage Mu left end 44 0.51
22gb|M10190.1|PMUBSL Bacteriophage Mu left end with Mu A protein b... 44 0.51
23ref|XM_513425.1| PREDICTED: Pan troglodytes similar to FLJ46354 ... 42 2.0
24gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 2.0
25gb|AC124818.7| Mus musculus chromosome 14, clone RP24-505E8, com... 42 2.0
26emb|AL157826.8| Human DNA sequence from clone RP11-176P17 on chr... 42 2.0
27dbj|AK091112.1| Homo sapiens cDNA FLJ33793 fis, clone CD34C20004... 42 2.0
28ref|XM_945383.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 2.0
29ref|XM_932901.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 2.0
30gb|AC099796.2| Homo sapiens chromosome 1 clone RP5-866L20, compl... 42 2.0
31gb|AF149238.1|CLSWS2OP1 Columba livia SWS2 opsin (sws2) gene, ex... 42 2.0
32emb|CR925743.18| Zebrafish DNA sequence from clone CH211-107N13 ... 42 2.0
33gb|AC154677.2| Mus musculus BAC clone RP24-299I4 from chromosome... 42 2.0
34gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 8.0
35gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 8.0
36emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 i... 40 8.0
37gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 8.0
38emb|AL357833.16| Human DNA sequence from clone RP11-482E14 on ch... 40 8.0
39emb|AL117380.28|HSJ749H19 Human DNA sequence from clone RP4-749H... 40 8.0
40gb|AF543849.1| Sesbania drummondii maturase-like protein (matK) ... 40 8.0
41emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom... 40 8.0
42emb|AJ720483.1| Gallus gallus mRNA for hypothetical protein, clo... 40 8.0
43ref|NM_001006163.1| Gallus gallus COP9 constitutive photomorphog... 40 8.0
44emb|BX005300.5| Zebrafish DNA sequence from clone CH211-87G21, c... 40 8.0
45gb|AC105925.5| Homo sapiens BAC clone RP11-753I4 from 4, complet... 40 8.0
46dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 8.0
47emb|BX004773.11| Zebrafish DNA sequence from clone DKEY-13D19, c... 40 8.0
48gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 8.0
49gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, comple... 40 8.0 
>gb|AY104024.1| Zea mays PCO092230 mRNA sequence
          Length = 1569

 Score =  303 bits (153), Expect = 3e-79
 Identities = 368/442 (83%)
 Strand = Plus / Plus

                                                                       
Query: 141 gctggacgcgcccaacctcgacgattacctccccgcggactcgctcccgcaggaaccccc 200
           |||||||  ||| ||||| || || ||||||||  | |||||||||||||||||  | ||
Sbjct: 125 gctggaccggccaaacctggaggactacctcccgcccgactcgctcccgcaggaggcgcc 184

                                                                       
Query: 201 caggactctcaccctgcgcgatcttccggacatctcgccagtgctcaccgaggcagcggg 260
           | ||| ||||   ||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct: 185 ccggaatctccatctgcgcgatctgctggacatctcgccggtgctcaccgaggcagcggg 244

                                                                       
Query: 261 tgccatcgtcgatgattcattcacacgttgcttcaagtcaaattctccggagccatggaa 320
           |||||| |||||||| || |||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 245 tgccattgtcgatgactccttcacacggtgctttaagtcaaattctccagagccatggaa 304

                                                                       
Query: 321 ctggaacatctacttgttcccattatggtgcttgggagtagtcataagatatggactgct 380
            |||||||| ||  ||||||| ||||||||||| || ||||| |||||||||||| | ||
Sbjct: 305 ttggaacatatatctgttccccttatggtgctttggtgtagtaataagatatggaatact 364

                                                                       
Query: 381 gtttccgctaaggttcttaacacttgtactaggatggatggccttctttacggcnnnnnn 440
            || || || |||| |||||| |||| | |||||||| | || || ||| | ||      
Sbjct: 365 cttcccactgaggtccttaacgcttgcaataggatggttagcattttttgctgccttttt 424

                                                                       
Query: 441 ncccgtgcatttcctaatgaacgggaaaaataagctaaaaagtaaaatagagagaaagct 500
            || || ||||||||| |||| ||| || | ||| | | ||||||||| ||||| ||| |
Sbjct: 425 tcctgtccatttcctattgaaagggcaagacaagttgagaagtaaaattgagaggaagtt 484

                                                                       
Query: 501 ggttgaaatgatgtgcagtgtttttgttgcttcttggactggagtgatcaagtaccatgg 560
           ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 485 ggttgaaatgatgtgcagtgtttttgttgcttcatggactggagttatcaagtatcatgg 544

                                 
Query: 561 accacgcccaagctcacgacct 582
           ||||||||||||| ||||||||
Sbjct: 545 accacgcccaagcacacgacct 566
to top
>ref|XM_478533.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1413

 Score =  204 bits (103), Expect = 2e-49
 Identities = 199/231 (86%)
 Strand = Plus / Plus

                                                                       
Query: 141 gctggacgcgcccaacctcgacgattacctccccgcggactcgctcccgcaggaaccccc 200
           |||||||  ||| ||||| || || ||||||||  | |||||||| ||||||||   |||
Sbjct: 77  gctggaccggccgaacctggaggactacctcccatccgactcgctgccgcaggagttccc 136

                                                                       
Query: 201 caggactctcaccctgcgcgatcttccggacatctcgccagtgctcaccgaggcagcggg 260
           ||||| ||||   ||||||||||| | |||||||||||| |||||||| || || |||||
Sbjct: 137 caggaatctccatctgcgcgatctgctggacatctcgccggtgctcactgaagcggcggg 196

                                                                       
Query: 261 tgccatcgtcgatgattcattcacacgttgcttcaagtcaaattctccggagccatggaa 320
            |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 197 cgccatcgtcgatgattcattcacacgttgctttaagtcaaattctccagagccatggaa 256

                                                              
Query: 321 ctggaacatctacttgttcccattatggtgcttgggagtagtcataagata 371
            |||||||| || || |||||||| ||||||||||||||||| ||||||||
Sbjct: 257 ttggaacatttatttattcccattgtggtgcttgggagtagtgataagata 307



 Score =  165 bits (83), Expect = 2e-37
 Identities = 95/99 (95%)
 Strand = Plus / Plus

                                                                       
Query: 480 aagtaaaatagagagaaagctggttgaaatgatgtgcagtgtttttgttgcttcttggac 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aagtaaaatagagagaaagctggttgaaatgatgtgcagtgtttttgttgcttcttggac 472

                                                  
Query: 540 tggagtgatcaagtaccatggaccacgcccaagctcacg 578
           ||||||||||||||| ||||| || ||||||||| ||||
Sbjct: 473 tggagtgatcaagtatcatgggcctcgcccaagcacacg 511
to top
>dbj|AK067845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124G01, full
           insert sequence
          Length = 1413

 Score =  204 bits (103), Expect = 2e-49
 Identities = 199/231 (86%)
 Strand = Plus / Plus

                                                                       
Query: 141 gctggacgcgcccaacctcgacgattacctccccgcggactcgctcccgcaggaaccccc 200
           |||||||  ||| ||||| || || ||||||||  | |||||||| ||||||||   |||
Sbjct: 77  gctggaccggccgaacctggaggactacctcccatccgactcgctgccgcaggagttccc 136

                                                                       
Query: 201 caggactctcaccctgcgcgatcttccggacatctcgccagtgctcaccgaggcagcggg 260
           ||||| ||||   ||||||||||| | |||||||||||| |||||||| || || |||||
Sbjct: 137 caggaatctccatctgcgcgatctgctggacatctcgccggtgctcactgaagcggcggg 196

                                                                       
Query: 261 tgccatcgtcgatgattcattcacacgttgcttcaagtcaaattctccggagccatggaa 320
            |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 197 cgccatcgtcgatgattcattcacacgttgctttaagtcaaattctccagagccatggaa 256

                                                              
Query: 321 ctggaacatctacttgttcccattatggtgcttgggagtagtcataagata 371
            |||||||| || || |||||||| ||||||||||||||||| ||||||||
Sbjct: 257 ttggaacatttatttattcccattgtggtgcttgggagtagtgataagata 307



 Score =  165 bits (83), Expect = 2e-37
 Identities = 95/99 (95%)
 Strand = Plus / Plus

                                                                       
Query: 480 aagtaaaatagagagaaagctggttgaaatgatgtgcagtgtttttgttgcttcttggac 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aagtaaaatagagagaaagctggttgaaatgatgtgcagtgtttttgttgcttcttggac 472

                                                  
Query: 540 tggagtgatcaagtaccatggaccacgcccaagctcacg 578
           ||||||||||||||| ||||| || ||||||||| ||||
Sbjct: 473 tggagtgatcaagtatcatgggcctcgcccaagcacacg 511
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  143 bits (72), Expect = 7e-31
 Identities = 84/88 (95%)
 Strand = Plus / Minus

                                                                            
Query: 491      agagaaagctggttgaaatgatgtgcagtgtttttgttgcttcttggactggagtgatca 550
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20756894 agagaaagctggttgaaatgatgtgcagtgtttttgttgcttcttggactggagtgatca 20756835

                                            
Query: 551      agtaccatggaccacgcccaagctcacg 578
                |||| ||||| || ||||||||| ||||
Sbjct: 20756834 agtatcatgggcctcgcccaagcacacg 20756807



 Score =  131 bits (66), Expect = 3e-27
 Identities = 90/98 (91%)
 Strand = Plus / Minus

                                                                            
Query: 274      gattcattcacacgttgcttcaagtcaaattctccggagccatggaactggaacatctac 333
                |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| || 
Sbjct: 20757689 gattcattcacacgttgctttaagtcaaattctccagagccatggaattggaacatttat 20757630

                                                      
Query: 334      ttgttcccattatggtgcttgggagtagtcataagata 371
                || |||||||| ||||||||||||||||| ||||||||
Sbjct: 20757629 ttattcccattgtggtgcttgggagtagtgataagata 20757592



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 216      gcgcgatcttccggacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatg 274
                ||||||||| | |||||||||||| |||||||| || || ||||| |||||||||||||
Sbjct: 20758616 gcgcgatctgctggacatctcgccggtgctcactgaagcggcgggcgccatcgtcgatg 20758558
to top
>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0681F05
          Length = 144741

 Score =  143 bits (72), Expect = 7e-31
 Identities = 84/88 (95%)
 Strand = Plus / Minus

                                                                          
Query: 491    agagaaagctggttgaaatgatgtgcagtgtttttgttgcttcttggactggagtgatca 550
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109644 agagaaagctggttgaaatgatgtgcagtgtttttgttgcttcttggactggagtgatca 109585

                                          
Query: 551    agtaccatggaccacgcccaagctcacg 578
              |||| ||||| || ||||||||| ||||
Sbjct: 109584 agtatcatgggcctcgcccaagcacacg 109557



 Score =  131 bits (66), Expect = 3e-27
 Identities = 90/98 (91%)
 Strand = Plus / Minus

                                                                          
Query: 274    gattcattcacacgttgcttcaagtcaaattctccggagccatggaactggaacatctac 333
              |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| || 
Sbjct: 110439 gattcattcacacgttgctttaagtcaaattctccagagccatggaattggaacatttat 110380

                                                    
Query: 334    ttgttcccattatggtgcttgggagtagtcataagata 371
              || |||||||| ||||||||||||||||| ||||||||
Sbjct: 110379 ttattcccattgtggtgcttgggagtagtgataagata 110342



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                         
Query: 216    gcgcgatcttccggacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatg 274
              ||||||||| | |||||||||||| |||||||| || || ||||| |||||||||||||
Sbjct: 111366 gcgcgatctgctggacatctcgccggtgctcactgaagcggcgggcgccatcgtcgatg 111308
to top
>gb|BT013293.1| Lycopersicon esculentum clone 134908R, mRNA sequence
          Length = 1444

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                       
Query: 274 gattcattcacacgttgcttcaagtcaaattctccggagccatggaactggaacatctac 333
           ||||| ||||| || ||||||||||||||| | || || || ||||||||||||||||| 
Sbjct: 265 gattctttcacccgatgcttcaagtcaaatccaccagaaccttggaactggaacatctat 324

                                     
Query: 334 ttgttcccattatggtgcttgggagt 359
           ||||| || |||||||||||||||||
Sbjct: 325 ttgtttcctttatggtgcttgggagt 350



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 509 tgatgtgcagtgtttttgttgcttcttggactggagtgatcaagtaccatggaccacg 566
           |||| |||||| | |||||||| ||||||||||| ||  |||| |||||||| |||||
Sbjct: 500 tgatatgcagtttctttgttgcatcttggactggggttgtcaaataccatggcccacg 557
to top
>ref|NM_125455.2| Arabidopsis thaliana acyltransferase AT5G60620 mRNA, complete cds
          Length = 1323

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 92/114 (80%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatgattcattcacacgt 288
           |||||||| |||  |||||| || || || |||||||| || ||||| || |||||| | 
Sbjct: 186 gacatctctccaacgctcactgaagctgctggtgccattgttgatgactcgttcacaaga 245

                                                                 
Query: 289 tgcttcaagtcaaattctccggagccatggaactggaacatctacttgttccca 342
           || ||||| |||||| |||| || || ||||||||||| || ||||| ||||||
Sbjct: 246 tgtttcaaatcaaatcctccagaaccttggaactggaatatttacttattccca 299
to top
>gb|BT006033.1| Arabidopsis thaliana clone U51225 unknown protein (At5g60620) mRNA,
           complete cds
          Length = 1162

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 92/114 (80%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatgattcattcacacgt 288
           |||||||| |||  |||||| || || || |||||||| || ||||| || |||||| | 
Sbjct: 136 gacatctctccaacgctcactgaagctgctggtgccattgttgatgactcgttcacaaga 195

                                                                 
Query: 289 tgcttcaagtcaaattctccggagccatggaactggaacatctacttgttccca 342
           || ||||| |||||| |||| || || ||||||||||| || ||||| ||||||
Sbjct: 196 tgtttcaaatcaaatcctccagaaccttggaactggaatatttacttattccca 249
to top
>emb|BX830392.1|CNS09ZYY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB77ZH03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1276

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 92/114 (80%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatgattcattcacacgt 288
           |||||||| |||  |||||| || || || |||||||| || ||||| || |||||| | 
Sbjct: 176 gacatctctccaacgctcactgaagctgctggtgccattgttgatgactcgttcacaaga 235

                                                                 
Query: 289 tgcttcaagtcaaattctccggagccatggaactggaacatctacttgttccca 342
           || ||||| |||||| |||| || || ||||||||||| || ||||| ||||||
Sbjct: 236 tgtttcaaatcaaatcctccagaaccttggaactggaatatttacttattccca 289
to top
>dbj|AK118869.1| Arabidopsis thaliana At5g60620 mRNA for unknown protein, complete
           cds, clone: RAFL21-19-N13
          Length = 1324

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 92/114 (80%)
 Strand = Plus / Plus

                                                                       
Query: 229 gacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatgattcattcacacgt 288
           |||||||| |||  |||||| || || || |||||||| || ||||| || |||||| | 
Sbjct: 186 gacatctctccaacgctcactgaagctgctggtgccattgttgatgactcgttcacaaga 245

                                                                 
Query: 289 tgcttcaagtcaaattctccggagccatggaactggaacatctacttgttccca 342
           || ||||| |||||| |||| || || ||||||||||| || ||||| ||||||
Sbjct: 246 tgtttcaaatcaaatcctccagaaccttggaactggaatatttacttattccca 299
to top
>gb|AC159873.11| Medicago truncatula clone mth2-46p15, complete sequence
          Length = 129948

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                        
Query: 292  ttcaagtcaaattctccggagccatggaactggaacatctacttgttcccattatggtgc 351
            |||||||||||| |||| || |||||||| |||||||| || ||||| || || ||||| 
Sbjct: 1187 ttcaagtcaaatcctccagaaccatggaattggaacatttatttgtttcctttgtggtgt 1246

                    
Query: 352  ttgggagt 359
            || |||||
Sbjct: 1247 ttcggagt 1254
to top
>gb|AC135801.24| Medicago truncatula clone mth2-23o16, complete sequence
          Length = 115452

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                          
Query: 292    ttcaagtcaaattctccggagccatggaactggaacatctacttgttcccattatggtgc 351
              |||||||||||| |||| || |||||||| |||||||| || ||||| || || ||||| 
Sbjct: 113456 ttcaagtcaaatcctccagaaccatggaattggaacatttatttgtttcctttgtggtgt 113515

                      
Query: 352    ttgggagt 359
              || |||||
Sbjct: 113516 ttcggagt 113523
to top
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 503     ttgaaatgatgtgcagtgtttttgtt 528
               |||||||||| |||||||||||||||
Sbjct: 1465316 ttgaaatgatttgcagtgtttttgtt 1465291
to top
>gb|AC102044.7| Mus musculus chromosome 9, clone RP23-303N8, complete sequence
          Length = 210347

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 479    aaagtaaaatagagagaaagct 500
              ||||||||||||||||||||||
Sbjct: 201929 aaagtaaaatagagagaaagct 201950
to top
>emb|V01464.1|XXMU02 Bacteriophage Mu genome left end encoding the genes CI, CII (ner)
           and the beginning of gene A
          Length = 1592

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 503 ttgaaatgatgtgcagtgtttttgtt 528
           |||||||||| |||||||||||||||
Sbjct: 197 ttgaaatgatttgcagtgtttttgtt 172
to top
>gb|AF083977.1| Bacteriophage Mu, complete genome
          Length = 36717

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 503 ttgaaatgatgtgcagtgtttttgtt 528
           |||||||||| |||||||||||||||
Sbjct: 197 ttgaaatgatttgcagtgtttttgtt 172
to top
>gb|AY860420.1| Cloning vector MuNXKan, complete sequence
          Length = 37199

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 503 ttgaaatgatgtgcagtgtttttgtt 528
           |||||||||| |||||||||||||||
Sbjct: 197 ttgaaatgatttgcagtgtttttgtt 172
to top
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 503     ttgaaatgatgtgcagtgtttttgtt 528
               |||||||||| |||||||||||||||
Sbjct: 1502247 ttgaaatgatttgcagtgtttttgtt 1502222
to top
>gb|M15949.1|SYNPMUEND Synthetic Bacteriophage Mu left and right end DNA
          Length = 324

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 503 ttgaaatgatgtgcagtgtttttgtt 528
           |||||||||| |||||||||||||||
Sbjct: 201 ttgaaatgatttgcagtgtttttgtt 176
to top
>gb|M34919.1|PMUNE1 Bacteriophage mu genomic left end
          Length = 220

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 503 ttgaaatgatgtgcagtgtttttgtt 528
           |||||||||| |||||||||||||||
Sbjct: 197 ttgaaatgatttgcagtgtttttgtt 172
to top
>gb|M64097.1|PMULEFTEN Bacteriophage Mu left end
          Length = 10661

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 503 ttgaaatgatgtgcagtgtttttgtt 528
           |||||||||| |||||||||||||||
Sbjct: 197 ttgaaatgatttgcagtgtttttgtt 172
to top
>gb|M10190.1|PMUBSL Bacteriophage Mu left end with Mu A protein binding sites L1 and L2
          Length = 200

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 503 ttgaaatgatgtgcagtgtttttgtt 528
           |||||||||| |||||||||||||||
Sbjct: 197 ttgaaatgatttgcagtgtttttgtt 172
to top
>ref|XM_513425.1| PREDICTED: Pan troglodytes similar to FLJ46354 protein (LOC456875),
           mRNA
          Length = 4908

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 168 cctccccgcggactcgctccc 188
           |||||||||||||||||||||
Sbjct: 644 cctccccgcggactcgctccc 664
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 79      cggcgtcatcgacgtcgccatcgtc 103
               ||||||||||| |||||||||||||
Sbjct: 2566904 cggcgtcatcgtcgtcgccatcgtc 2566928
to top
>gb|AC124818.7| Mus musculus chromosome 14, clone RP24-505E8, complete sequence
          Length = 159170

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 474    gctaaaaagtaaaatagagag 494
              |||||||||||||||||||||
Sbjct: 132582 gctaaaaagtaaaatagagag 132602
to top
>emb|AL157826.8| Human DNA sequence from clone RP11-176P17 on chromosome 9p22.3-24.1
            Contains part of a variant of the PTPRD gene for protein
            tyrosine phosphatase, receptor type, D (HPTP, PTPD,
            HPTPD), complete sequence
          Length = 149087

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 469  aataagctaaaaagtaaaatagagagaaa 497
            |||||||| | ||||||||||||||||||
Sbjct: 9357 aataagctgagaagtaaaatagagagaaa 9329
to top
>dbj|AK091112.1| Homo sapiens cDNA FLJ33793 fis, clone CD34C2000443, weakly similar
           to Acyl-CoA hydrolase
          Length = 2875

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 168 cctccccgcggactcgctccc 188
           |||||||||||||||||||||
Sbjct: 91  cctccccgcggactcgctccc 111
to top
>ref|XM_945383.1| PREDICTED: Homo sapiens hypothetical protein LOC652284 (LOC652284),
           mRNA
          Length = 375

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 168 cctccccgcggactcgctccc 188
           |||||||||||||||||||||
Sbjct: 84  cctccccgcggactcgctccc 64
to top
>ref|XM_932901.1| PREDICTED: Homo sapiens hypothetical protein LOC645442 (LOC645442),
           mRNA
          Length = 375

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 168 cctccccgcggactcgctccc 188
           |||||||||||||||||||||
Sbjct: 84  cctccccgcggactcgctccc 64
to top
>gb|AC099796.2| Homo sapiens chromosome 1 clone RP5-866L20, complete sequence
          Length = 132033

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   cctccccgcggactcgctccc 188
             |||||||||||||||||||||
Sbjct: 76734 cctccccgcggactcgctccc 76754
to top
>gb|AF149238.1|CLSWS2OP1 Columba livia SWS2 opsin (sws2) gene, exon 1
          Length = 452

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 138 ggcgctggacgcgcccaacct 158
           |||||||||||||||||||||
Sbjct: 102 ggcgctggacgcgcccaacct 122
to top
>emb|CR925743.18| Zebrafish DNA sequence from clone CH211-107N13 in linkage group 20,
             complete sequence
          Length = 161957

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 468   aaataagctaaaaagtaaaat 488
             |||||||||||||||||||||
Sbjct: 10451 aaataagctaaaaagtaaaat 10431
to top
>gb|AC154677.2| Mus musculus BAC clone RP24-299I4 from chromosome 14, complete sequence
          Length = 149259

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 474    gctaaaaagtaaaatagagag 494
              |||||||||||||||||||||
Sbjct: 128467 gctaaaaagtaaaatagagag 128447
to top
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 210     caccctgcgcgatcttccgg 229
               ||||||||||||||||||||
Sbjct: 3159686 caccctgcgcgatcttccgg 3159705
to top
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    atcgtctcgccggcgtcggc 117
             ||||||||||||||||||||
Sbjct: 12201 atcgtctcgccggcgtcggc 12182
to top
>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24,
             complete sequence
          Length = 143425

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   acatctacttgttcccatta 345
             ||||||||||||||||||||
Sbjct: 57632 acatctacttgttcccatta 57651
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 79      cggcgtcatcgacgtcgcca 98
               ||||||||||||||||||||
Sbjct: 2507573 cggcgtcatcgacgtcgcca 2507554



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      tcatcgacgtcgccatcgtc 103
               ||||||||||||||||||||
Sbjct: 2019602 tcatcgacgtcgccatcgtc 2019583
to top
>emb|AL357833.16| Human DNA sequence from clone RP11-482E14 on chromosome 10 Contains two
             novel genes and a CpG island, complete sequence
          Length = 178563

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   cgctgggagaagatggcgtc 137
             ||||||||||||||||||||
Sbjct: 78200 cgctgggagaagatggcgtc 78181
to top
>emb|AL117380.28|HSJ749H19 Human DNA sequence from clone RP4-749H19 on chromosome 20q13.11-13.33
             Contains ESTs, STSs, GSSs and a CpG island, complete
             sequence
          Length = 178473

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   ccccccaggactctcaccct 215
             ||||||||||||||||||||
Sbjct: 18604 ccccccaggactctcaccct 18623
to top
>gb|AF543849.1| Sesbania drummondii maturase-like protein (matK) gene, complete cds;
            chloroplast gene for chloroplast product
          Length = 1536

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 466  aaaaataagctaaaaagtaaaata 489
            |||||||| |||||||||||||||
Sbjct: 1018 aaaaataacctaaaaagtaaaata 995
to top
>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    cggcgtcatcgacgtcgcca 98
             ||||||||||||||||||||
Sbjct: 13279 cggcgtcatcgacgtcgcca 13260
to top
>emb|AJ720483.1| Gallus gallus mRNA for hypothetical protein, clone 18l12
          Length = 1613

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 127 aagatggcgtcggcgctgga 146
           ||||||||||||||||||||
Sbjct: 43  aagatggcgtcggcgctgga 62
to top
>ref|NM_001006163.1| Gallus gallus COP9 constitutive photomorphogenic homolog subunit 3
           (Arabidopsis) (COPS3), mRNA
          Length = 1613

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 127 aagatggcgtcggcgctgga 146
           ||||||||||||||||||||
Sbjct: 43  aagatggcgtcggcgctgga 62
to top
>emb|BX005300.5| Zebrafish DNA sequence from clone CH211-87G21, complete sequence
          Length = 110022

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   taaaaagtaaaatagagaga 495
             ||||||||||||||||||||
Sbjct: 31702 taaaaagtaaaatagagaga 31683
to top
>gb|AC105925.5| Homo sapiens BAC clone RP11-753I4 from 4, complete sequence
          Length = 136197

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 466    aaaaataagctaaaaagtaaaata 489
              |||||||| |||||||||||||||
Sbjct: 132495 aaaaataaactaaaaagtaaaata 132518
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 126     gaagatggcgtcggcgctgg 145
               ||||||||||||||||||||
Sbjct: 2805714 gaagatggcgtcggcgctgg 2805733
to top
>emb|BX004773.11| Zebrafish DNA sequence from clone DKEY-13D19, complete sequence
          Length = 245924

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    taaaaagtaaaatagagaga 495
              ||||||||||||||||||||
Sbjct: 167389 taaaaagtaaaatagagaga 167408
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 75      tccgcggcgtcatcgacgtcgcca 98
               ||||||||||||||||| ||||||
Sbjct: 3898982 tccgcggcgtcatcgacttcgcca 3899005
to top
>gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, complete sequence
          Length = 210088

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 392    ggttcttaacacttgtacta 411
              ||||||||||||||||||||
Sbjct: 128612 ggttcttaacacttgtacta 128631


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,258,584
Number of Sequences: 3902068
Number of extensions: 4258584
Number of successful extensions: 85977
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85384
Number of HSP's gapped (non-prelim): 592
length of query: 586
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 563
effective length of database: 17,143,297,704
effective search space: 9651676607352
effective search space used: 9651676607352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top