ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart41h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC092229.2| Drosophila melanogaster clone BACR23I04, complete... 40 0.67
2emb|BX908797.10| Zebrafish DNA sequence from clone DKEY-43P13 in... 40 0.67
3gb|AC092247.1|AC092247 Drosophila melanogaster, chromosome 2L, r... 40 0.67
4gb|AE003647.3| Drosophila melanogaster chromosome 2L, section 56... 40 0.67
5gb|AC002436.1|AC002436 Drosophila melanogaster (P1 DS01362 (D105... 40 0.67
6emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 38 2.6
7emb|AL110855.1|CNS018VK Botrytis cinerea strain T4 cDNA library 38 2.6
8gb|AC069070.19| Homo sapiens 3 BAC RP11-575H20 (Roswell Park Can... 38 2.6
9dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 38 2.6
10dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 38 2.6
11dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 38 2.6
12dbj|AP002091.2| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 38 2.6

>gb|AC092229.2| Drosophila melanogaster clone BACR23I04, complete sequence
          Length = 202042

 Score = 40.1 bits (20), Expect = 0.67
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    cagcgtttccctttcacttt 36
             ||||||||||||||||||||
Sbjct: 23368 cagcgtttccctttcacttt 23387



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>emb|BX908797.10| Zebrafish DNA sequence from clone DKEY-43P13 in linkage group 3, complete
              sequence
          Length = 222385

 Score = 40.1 bits (20), Expect = 0.67
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 9      caggacatcagcgtttccctttcacttt 36
              |||||| |||||| ||||||||||||||
Sbjct: 164547 caggacgtcagcgcttccctttcacttt 164520



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>gb|AC092247.1|AC092247 Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone
              BACR36B06, complete sequence
          Length = 183436

 Score = 40.1 bits (20), Expect = 0.67
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     cagcgtttccctttcacttt 36
              ||||||||||||||||||||
Sbjct: 159975 cagcgtttccctttcacttt 159994



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>gb|AE003647.3| Drosophila melanogaster chromosome 2L, section 56 of 83 of the complete
             sequence
          Length = 261949

 Score = 40.1 bits (20), Expect = 0.67
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    cagcgtttccctttcacttt 36
             ||||||||||||||||||||
Sbjct: 92609 cagcgtttccctttcacttt 92628



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>gb|AC002436.1|AC002436 Drosophila melanogaster (P1 DS01362 (D105)) DNA sequence, complete
             sequence
          Length = 27146

 Score = 40.1 bits (20), Expect = 0.67
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    cagcgtttccctttcacttt 36
             ||||||||||||||||||||
Sbjct: 19049 cagcgtttccctttcacttt 19030



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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 22      tttccctttcactttgctg 40
               |||||||||||||||||||
Sbjct: 4092680 tttccctttcactttgctg 4092662



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>emb|AL110855.1|CNS018VK Botrytis cinerea strain T4 cDNA library
          Length = 816

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 22  tttccctttcactttgctg 40
           |||||||||||||||||||
Sbjct: 589 tttccctttcactttgctg 607



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>gb|AC069070.19| Homo sapiens 3 BAC RP11-575H20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 154828

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    ttccctttcactttgctgg 41
             |||||||||||||||||||
Sbjct: 65730 ttccctttcactttgctgg 65712



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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 22      tttccctttcactttgctg 40
               |||||||||||||||||||
Sbjct: 4182004 tttccctttcactttgctg 4181986



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 18      agcgtttccctttcacttt 36
               |||||||||||||||||||
Sbjct: 3118467 agcgtttccctttcacttt 3118449



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>dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1750A9
          Length = 220495

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 34    tttgctggctagctgctcc 52
             |||||||||||||||||||
Sbjct: 36653 tttgctggctagctgctcc 36671



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>dbj|AP002091.2| Homo sapiens genomic DNA, chromosome 6q25.2, clone: CITD-2058I12,
             complete sequence
          Length = 106763

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 34    tttgctggctagctgctcc 52
             |||||||||||||||||||
Sbjct: 89867 tttgctggctagctgctcc 89885


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 483,370
Number of Sequences: 3902068
Number of extensions: 483370
Number of successful extensions: 40273
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40238
Number of HSP's gapped (non-prelim): 35
length of query: 68
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 47
effective length of database: 17,151,101,840
effective search space: 806101786480
effective search space used: 806101786480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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