ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart41g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BSL1_ARATH (Q8L7U5) Serine/threonine-protein phosphatase BSL1 (E... 36 0.071
2KLH17_RAT (Q8K430) Kelch-like protein 17 (Actinfilin) 32 1.0
3KLH17_MOUSE (Q6TDP3) Kelch-like protein 17 (Actinfilin) 32 1.0
4KLH17_HUMAN (Q6TDP4) Kelch-like protein 17 (Actinfilin) 32 1.0
5DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular car... 32 1.3
6PTPA1_ASPOR (Q2UN27) Serine/threonine-protein phosphatase 2A act... 32 1.3
7AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPO... 31 2.3
8CHS1_EXODE (P30600) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP ... 30 3.0
9BSL2_ARATH (Q9SJF0) Serine/threonine-protein phosphatase BSL2 (E... 30 3.0
10KLD7B_HUMAN (Q96G42) Kelch domain-containing protein 7B 29 6.7
11RECF_SYNJB (Q2JIB8) DNA replication and repair protein recF 29 8.7

>BSL1_ARATH (Q8L7U5) Serine/threonine-protein phosphatase BSL1 (EC 3.1.3.16)|
           (BSU1-like protein 1)
          Length = 881

 Score = 35.8 bits (81), Expect = 0.071
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +1

Query: 319 YGVAVYNVTTGEWHRESSAPPVPMFAQCAA-VGTRLAVMGGW--DPKTFEPVADVNVLDA 489
           YG+ ++     EW       P P +   A  VG RL V GG     +  +  A V VLD 
Sbjct: 235 YGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVSGGVLRGGRVIDAEASVAVLDT 294

Query: 490 ATGVW 504
           A GVW
Sbjct: 295 AAGVW 299



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>KLH17_RAT (Q8K430) Kelch-like protein 17 (Actinfilin)|
          Length = 640

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 334 YNVTTGEWHRESSAPPVPMFAQCAAVGTRLAVMGGWDPKTFEPVADVNVLDAATGVW 504
           Y+  T  WH  +S          AAVG RL  +GG+D  +   +A V   D  T  W
Sbjct: 360 YDTRTDRWHVVASMSTRRARVGVAAVGNRLYAVGGYDGTS--DLATVESYDPVTNTW 414



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>KLH17_MOUSE (Q6TDP3) Kelch-like protein 17 (Actinfilin)|
          Length = 640

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 334 YNVTTGEWHRESSAPPVPMFAQCAAVGTRLAVMGGWDPKTFEPVADVNVLDAATGVW 504
           Y+  T  WH  +S          AAVG RL  +GG+D  +   +A V   D  T  W
Sbjct: 360 YDTRTDRWHVVASMSTRRARVGVAAVGNRLYAVGGYDGTS--DLATVESYDPVTNTW 414



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>KLH17_HUMAN (Q6TDP4) Kelch-like protein 17 (Actinfilin)|
          Length = 642

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 334 YNVTTGEWHRESSAPPVPMFAQCAAVGTRLAVMGGWDPKTFEPVADVNVLDAATGVW 504
           Y+  T  WH  +S          AAVG RL  +GG+D  +   +A V   D  T  W
Sbjct: 362 YDTRTDRWHVVASMSTRRARVGVAAVGNRLYAVGGYDGTS--DLATVESYDPVTNTW 416



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>DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular carcinoma novel|
           gene 3 protein)
          Length = 836

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 152 DPCGTRARQSTATSSGIPGMRSTWSASHPWT--RLFGFIIA 36
           D CG     +  T S +P   S WSASHP +  ++ G+I++
Sbjct: 304 DICGGSELDAVKTDSSLPSPSSLWSASHPSSSKKMDGYILS 344



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>PTPA1_ASPOR (Q2UN27) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 478

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 446 PRPSSPWRTSTCWTPPPASGTAA 514
           P   +PW T++  TPPP++GTAA
Sbjct: 392 PGTKAPWATASQSTPPPSTGTAA 414



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>AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPONSE)|
          Length = 372

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 91  LIPGMPDDVAVDCLARVPHGSYRSMRRVCRGW 186
           LI G+P+D+A  CL R+P+  +   R V   W
Sbjct: 28  LISGLPNDIAELCLLRLPYPYHALYRSVSSSW 59



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>CHS1_EXODE (P30600) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase 1) (Class-II chitin
           synthase 1)
          Length = 988

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 449 RPSSPWRTSTCWTPPPASGTA 511
           RPS+P R ST WT PPA   A
Sbjct: 58  RPSTPSRVSTDWTRPPAPSVA 78



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>BSL2_ARATH (Q9SJF0) Serine/threonine-protein phosphatase BSL2 (EC 3.1.3.16)|
           (BSU1-like protein 2)
          Length = 1088

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +1

Query: 319 YGVAVYNVTTGEWHRESSAPPVPMFAQCAA-VGTRLAVMGG--WDPKTFEPVADVNVLDA 489
           YG+A +     EW       P   +   A  V  RL V GG     +  E  + V VLD 
Sbjct: 316 YGLAKHRDGRWEWAIAPGVSPSSRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDT 375

Query: 490 ATGVW 504
           A GVW
Sbjct: 376 AAGVW 380



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>KLD7B_HUMAN (Q96G42) Kelch domain-containing protein 7B|
          Length = 495

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +1

Query: 322 GVAV--YNVTTGEWHRESSAP-PVPMFAQCAAVGTRLAVMGGWDPKTF 456
           G AV  YN  TG W R +S P P P    C  +G  +  +      TF
Sbjct: 406 GAAVMRYNTVTGSWSRAASLPLPAPAPLHCTTLGNTIYCLNPQVTATF 453



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>RECF_SYNJB (Q2JIB8) DNA replication and repair protein recF|
          Length = 380

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 461 GSKVLGSQPPITARRVPTAAHWANIGTGGAE-LSRCHSPVVTL 336
           GS+++  +  +  R  P AAHW  + +GG E L+  + P V L
Sbjct: 190 GSRIMRRRARLLQRLEPLAAHWHRVISGGRETLTLTYRPQVPL 232


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,059,486
Number of Sequences: 219361
Number of extensions: 582857
Number of successful extensions: 2389
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2389
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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