ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart41g06 |
|---|---|
| Clone Library Name | barley_pub |
>EXOS9_MOUSE (Q9JHI7) Exosome complex exonuclease RRP45 (EC 3.1.13.-) (Exosome| component 9) (Polymyositis/scleroderma autoantigen 1) (Autoantigen PM/Scl 1) (Polymyositis/scleroderma autoantigen 75 kDa) (PM/Scl-75) (P75 polymyositis-scleroderma overlap syn Length = 438 Score = 150 bits (378), Expect = 3e-36 Identities = 71/162 (43%), Positives = 106/162 (65%) Frame = +2 Query: 80 EREFIEQALQSDLRVDGRRPFDFRKLKIAFGREDGSAEVELGETRVMGYVTAQLVQPYKD 259 ER F+ +A++ R+DGR+ +D+R ++I+FG + G VELG+TRV+G V+ +LV P + Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLN 69 Query: 260 RPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHV 439 R EG L E S MA PAFEPGR + ++L R+++R LR S+ +D ESLCVVAG+ V Sbjct: 70 RATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV 129 Query: 440 WSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRPECTVGGDD 565 W +RVDLH+L+++G FRRP+ +V G++ Sbjct: 130 WQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEE 171
>RRP45_SCHPO (O74918) Putative exosome complex exonuclease RRP45 (EC 3.1.13.-)| (Ribosomal RNA-processing protein 45) Length = 291 Score = 144 bits (362), Expect = 2e-34 Identities = 66/165 (40%), Positives = 103/165 (62%) Frame = +2 Query: 71 TVNEREFIEQALQSDLRVDGRRPFDFRKLKIAFGREDGSAEVELGETRVMGYVTAQLVQP 250 ++N +EF+ +L+ LR+DGR+ DFR L+I FG+E G +V G TRVM +T ++ +P Sbjct: 8 SLNNKEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTEITKP 67 Query: 251 YKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAG 430 Y DRP +G +I TE +P+A AFE GR + I + R+I++ +R S A+D ESLC+++G Sbjct: 68 YTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISG 127 Query: 431 KHVWSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRPECTVGGDD 565 + W VR +H ++++G FRRPE TV G++ Sbjct: 128 QKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEE 172
>EXOS9_HUMAN (Q06265) Exosome complex exonuclease RRP45 (EC 3.1.13.-) (Exosome| component 9) (Polymyositis/scleroderma autoantigen 1) (Autoantigen PM/Scl 1) (Polymyositis/scleroderma autoantigen 75 kDa) (PM/Scl-75) (P75 polymyositis-scleroderma overlap syn Length = 423 Score = 143 bits (360), Expect = 4e-34 Identities = 68/149 (45%), Positives = 98/149 (65%) Frame = +2 Query: 119 RVDGRRPFDFRKLKIAFGREDGSAEVELGETRVMGYVTAQLVQPYKDRPNEGTLAIFTEF 298 R+DGR+ +D+R ++I+FG + G VELG+TRV+G V+ +LV P +R EG L E Sbjct: 7 RLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLEL 66 Query: 299 SPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHVWSVRVDLHILDNE 478 S MA PAFEPGR + ++L R+++R LR S+ +D ESLCVVAG+ VW +RVDLH+L+++ Sbjct: 67 SQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHD 126 Query: 479 GXXXXXXXXXXXXXXSTFRRPECTVGGDD 565 G FRRP+ +V GD+ Sbjct: 127 GNIIDAASIAAIVALCHFRRPDVSVQGDE 155
>ECX2_METKA (Q8TYC2) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 267 Score = 130 bits (328), Expect = 2e-30 Identities = 66/165 (40%), Positives = 99/165 (60%), Gaps = 3/165 (1%) Frame = +2 Query: 80 EREFIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQP 250 +R + A+++ R+DGR +FR +++ G + +GSA V LG T+++ V ++ +P Sbjct: 10 KRHEVLAAIRAGERIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRP 69 Query: 251 YKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAG 430 Y D PNEG LA+ E P+ADP+FEPG P E AIEL RV+DRG+RES +D+E LC+ G Sbjct: 70 YPDSPNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEG 129 Query: 431 KHVWSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRPECTVGGDD 565 +H W VD+H+LD++G S P+ V D+ Sbjct: 130 EHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDDE 174
>RRP45_YEAST (Q05636) Exosome complex exonuclease RRP45 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 45) Length = 305 Score = 130 bits (328), Expect = 2e-30 Identities = 66/165 (40%), Positives = 98/165 (59%), Gaps = 1/165 (0%) Frame = +2 Query: 71 TVNEREFIEQALQSDLRVDGRRPFDFRKLKIAFGREDGSAEVELGETRVMGYVTAQLVQP 250 + +E +FI +AL+ + R+DGR FR ++I FG+E G V++G T+V ++ Q+ QP Sbjct: 8 SASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRISCQIAQP 67 Query: 251 YKDRPNEGTLAIFTEFSPMADPAFEPGR-PGEAAIELGRVIDRGLRESRAVDMESLCVVA 427 Y+DRP EG I TE SPMA FE G GE + R+I++ +R S A+D+E LC+VA Sbjct: 68 YEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVA 127 Query: 428 GKHVWSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRPECTVGGD 562 G W+VR D+H LD +G F++P+ TV G+ Sbjct: 128 GSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE 172
>ECX2_METMA (Q8PTT7) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 266 Score = 120 bits (302), Expect = 2e-27 Identities = 60/137 (43%), Positives = 89/137 (64%), Gaps = 3/137 (2%) Frame = +2 Query: 80 EREFIEQALQSDLRVDGRRPFDFRKLKI---AFGREDGSAEVELGETRVMGYVTAQLVQP 250 ++++I + D R DGR DFR+LK+ + +GSA+V LG T+V+ V Q P Sbjct: 12 KKDYIYNLMIKDKRQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTP 71 Query: 251 YKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAG 430 + D +EG + E +P+A P FEPG P E AIE+ RV+DRG+RES A+D++ LC+ G Sbjct: 72 FPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVG 131 Query: 431 KHVWSVRVDLHILDNEG 481 + VW V +D+HIL+N+G Sbjct: 132 ESVWIVFIDVHILNNDG 148
>ECX2_SULTO (Q975G9) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 275 Score = 120 bits (302), Expect = 2e-27 Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%) Frame = +2 Query: 80 EREFIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQP 250 ++E I AL+ +R+DGR+ D+R + + + +GSA V+LG+T V+ V + +P Sbjct: 15 KKESILNALERGIRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEP 74 Query: 251 YKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAG 430 + D PN+G L + E P+A FEPG P E AIEL RV+DR LR+S+AVD+ L ++ G Sbjct: 75 FPDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKAVDLSKLVIIPG 134 Query: 431 KHVWSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRPECTVGGDD 565 K VW+ VD+++LD G + P+ + GD+ Sbjct: 135 KKVWTAWVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEGDN 179
>ECX2_ARCFU (O29756) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 259 Score = 119 bits (299), Expect = 5e-27 Identities = 60/137 (43%), Positives = 90/137 (65%), Gaps = 3/137 (2%) Frame = +2 Query: 80 EREFIEQALQSDLRVDGRRPFDFRKLKI---AFGREDGSAEVELGETRVMGYVTAQLVQP 250 +R+++ L+ + R+DGR +FRK++I + +GSA V+LG+T+V+ V Q +P Sbjct: 10 KRDYVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEP 69 Query: 251 YKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAG 430 Y D P+ G + + E P+A P FEPG P E +IEL RV+DRG+RES AVD+ L + G Sbjct: 70 YPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEG 129 Query: 431 KHVWSVRVDLHILDNEG 481 + VW V VD+H LD++G Sbjct: 130 EKVWIVFVDIHALDDDG 146
>ECX2_METTH (O26778) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 271 Score = 119 bits (298), Expect = 6e-27 Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 3/168 (1%) Frame = +2 Query: 83 REFIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQPY 253 R+ I + + R+DGR +FR + I G + +GS+ V+LG T+++ V Q+ +P+ Sbjct: 13 RKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPF 72 Query: 254 KDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGK 433 D P G + +E PMA P FEPG P E ++EL RV+DR +RESR +D+E LC++ G Sbjct: 73 PDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGS 132 Query: 434 HVWSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRPECTVGGDDGQQV 577 VW + +DLHI+D +G R P V +DG+ V Sbjct: 133 KVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV--EDGEVV 178
>ECX2_PYRKO (Q5JIR7) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 272 Score = 118 bits (296), Expect = 1e-26 Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 3/166 (1%) Frame = +2 Query: 83 REFIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQPY 253 R+ I + L+ R+DGR D+R L+I + +GSA V LG+T+V+ + A+L +P+ Sbjct: 12 RDHIIELLREGKRIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEPF 71 Query: 254 KDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGK 433 D P+ G + E P+A P FEPG P E AIEL RV+DRG+RES+AVD+E L +V GK Sbjct: 72 PDLPDRGVITTNVELVPLASPTFEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGK 131 Query: 434 HVWSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRPECTVGGDDGQ 571 V + +D+H+LD+ G + + P+ + G+ Sbjct: 132 LVRVIFIDVHVLDHGGNLLDASGIGAIAALLSTKLPKVNYNEETGE 177
>ECX2_PYRFU (Q8U0M0) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 277 Score = 115 bits (289), Expect = 7e-26 Identities = 59/136 (43%), Positives = 88/136 (64%), Gaps = 3/136 (2%) Frame = +2 Query: 83 REFIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQPY 253 R++I L+ R+D R D+R +++ G + +GSA V+LG T+V+ + A L +P+ Sbjct: 12 RDYILNLLKEKKRIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEPF 71 Query: 254 KDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGK 433 D PN G + E P+A P FEPG P E AIEL RVIDRG+RESRA+++E + + GK Sbjct: 72 PDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGK 131 Query: 434 HVWSVRVDLHILDNEG 481 V V +D+H+LD++G Sbjct: 132 IVRVVFIDVHVLDHDG 147
>ECX2_PYRAB (Q9V118) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 274 Score = 115 bits (287), Expect = 1e-25 Identities = 63/170 (37%), Positives = 95/170 (55%), Gaps = 3/170 (1%) Frame = +2 Query: 83 REFIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQPY 253 R+ I L+ R+D R D+R ++I G + +GSA V+LG T+V+ + L +P+ Sbjct: 12 RDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPF 71 Query: 254 KDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGK 433 D PN G + E P+A P FEPG P E AIEL RVIDRG+RES+A+++E + +V GK Sbjct: 72 PDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGK 131 Query: 434 HVWSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRPECTVGGDDGQQVTV 583 V V +D+H+LD++G R P+ + G+ T+ Sbjct: 132 IVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETL 181
>ECX2_METAC (Q8TGX5) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 266 Score = 114 bits (285), Expect = 2e-25 Identities = 57/137 (41%), Positives = 87/137 (63%), Gaps = 3/137 (2%) Frame = +2 Query: 80 EREFIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQP 250 ++++I + R DGR DFR LK+ + +GSA+V LG T+V+ V Q P Sbjct: 12 KKDYIYNLMIKGKRQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTP 71 Query: 251 YKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAG 430 + D +EG + E +P+A P FEPG P E AIE+ RV+DRG+RES A+D++ LC+ G Sbjct: 72 FPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVG 131 Query: 431 KHVWSVRVDLHILDNEG 481 + VW V +D+H+L+++G Sbjct: 132 ESVWIVFIDVHVLNDDG 148
>ECX2_AERPE (Q9YC05) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 276 Score = 114 bits (285), Expect = 2e-25 Identities = 69/158 (43%), Positives = 92/158 (58%), Gaps = 8/158 (5%) Frame = +2 Query: 92 IEQALQSDLRVDGRRPFDF-----RKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQ 247 + +A S LR G RP D R +KI G + +GSA V+LG+T+V+ V A + Sbjct: 15 VREAYLSLLR-KGWRPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGA 73 Query: 248 PYKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVA 427 P+KD PN+G L + EF P+A P FEPG P E AIEL RV+DR LRE AVD+ESL + Sbjct: 74 PFKDTPNQGVLTVHAEFVPLASPVFEPGPPDENAIELARVVDRSLREVGAVDLESLVIRP 133 Query: 428 GKHVWSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRP 541 G+ VW + VDL+I+D++G T R P Sbjct: 134 GEKVWVLWVDLYIIDHDGNLFDASMLATMAVLLTARLP 171
>ECX2_SULSO (Q9UXC0) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 275 Score = 113 bits (283), Expect = 4e-25 Identities = 58/137 (42%), Positives = 85/137 (62%), Gaps = 3/137 (2%) Frame = +2 Query: 80 EREFIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQP 250 ++E I + +R DGR+ D+R L I + DGSA V+LG T V+ ++ +P Sbjct: 15 KKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP 74 Query: 251 YKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAG 430 Y+D PN+G L + E P+A FEPG P E AIEL RV+DR LR+S+A+D+ L + G Sbjct: 75 YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPG 134 Query: 431 KHVWSVRVDLHILDNEG 481 K VW+V +D+++LD G Sbjct: 135 KSVWTVWLDVYVLDYGG 151
>ECX2_PYRHO (O59224) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 274 Score = 112 bits (281), Expect = 6e-25 Identities = 59/136 (43%), Positives = 86/136 (63%), Gaps = 3/136 (2%) Frame = +2 Query: 83 REFIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQPY 253 R+ I L+ R+D R D+R ++I G + +GSA V+LG T+V+ + L +P+ Sbjct: 12 RDHIINLLKEGKRIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGIKTTLGEPF 71 Query: 254 KDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGK 433 D PN G + E P+A P FEPG P E AIEL RV DRG+RESRA+++E + +V GK Sbjct: 72 PDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVTDRGIRESRALNLEKMVIVPGK 131 Query: 434 HVWSVRVDLHILDNEG 481 V V +D+H+LD++G Sbjct: 132 IVRVVFIDVHVLDHDG 147
>ECX2_THEAC (Q9HIP1) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 260 Score = 112 bits (281), Expect = 6e-25 Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 3/164 (1%) Frame = +2 Query: 83 REFIEQALQSDLRVDGRRPFDFRKLKIA---FGREDGSAEVELGETRVMGYVTAQLVQPY 253 + +I ++ R+DGR P +FR+L I R +GSA V LG TRV+ V + +P+ Sbjct: 14 KNYILSTMKGGKRIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEPF 73 Query: 254 KDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGK 433 D P++G L E P+A P+FE G P + AIE+ RV+DRG+RES+ + E L + GK Sbjct: 74 PDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGK 133 Query: 434 HVWSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRPECTVGGDD 565 VW V +D+++LD +G P GG+D Sbjct: 134 KVWIVFLDINVLDYDGNLIDASTIAAVAALRNAVVPASKEGGED 177
>ECX2_THEVO (Q97BZ4) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 260 Score = 109 bits (273), Expect = 5e-24 Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%) Frame = +2 Query: 83 REFIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQPY 253 + +I ++ R+DGR P +FR++ I R +GSA V LG+TRV+ V + +P+ Sbjct: 14 KNYILTTMKGGKRIDGRLPDEFREITIIENYVPRANGSAYVALGKTRVVAGVKIEAGEPF 73 Query: 254 KDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGK 433 D P++G L E P+A P+FE G P + AIE+ RV+DRG+RES+ + + L + GK Sbjct: 74 PDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPDKLVIEQGK 133 Query: 434 HVWSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRPECTVGGDD 565 VW V +D+++LD +G P GG+D Sbjct: 134 KVWIVFLDINVLDYDGNLIDACTIAAVSALRNAIVPASREGGED 177
>ECX2_PYRAE (Q8ZVN0) Probable exosome complex exonuclease 2 (EC 3.1.13.-)| Length = 274 Score = 101 bits (251), Expect = 2e-21 Identities = 59/136 (43%), Positives = 81/136 (59%), Gaps = 3/136 (2%) Frame = +2 Query: 83 REFIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQPY 253 RE I + L + RVDGR P R ++I G DGSAEV+LG+T V+ V L QP+ Sbjct: 17 REQIRRLLATKYRVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQPF 76 Query: 254 KDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGK 433 D P+EG L + E P A P E G P E AIEL RV+DRG+R VD + L V GK Sbjct: 77 PDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGK 136 Query: 434 HVWSVRVDLHILDNEG 481 + + +DL++++++G Sbjct: 137 -AYVLWIDLYVINDDG 151
>EXOS7_HUMAN (Q15024) Exosome complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 42) (Exosome component 7) (p8) Length = 291 Score = 80.9 bits (198), Expect = 3e-15 Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 3/137 (2%) Frame = +2 Query: 80 EREFIEQALQSDLRVDGRRPFDFRKLKI---AFGREDGSAEVELGETRVMGYVTAQLVQP 250 E+ +I +Q DLRVDGR D+R +++ GSA V+LG T ++ V A++ P Sbjct: 10 EKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTP 69 Query: 251 YKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAG 430 ++PNEG L F + S A P FE + E+ + R +VD+++LC+ Sbjct: 70 KLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPR 129 Query: 431 KHVWSVRVDLHILDNEG 481 +H W + VD+ +L+ G Sbjct: 130 EHCWVLYVDVLLLECGG 146
>RRP43_SCHPO (Q10205) Putative exosome complex exonuclease RRP43 (EC 3.1.13.-)| (Ribosomal RNA-processing protein 43) Length = 270 Score = 80.1 bits (196), Expect = 4e-15 Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 3/159 (1%) Frame = +2 Query: 74 VNEREFIEQALQSDLRVDGRRPFDFRKLKI---AFGREDGSAEVELGETRVMGYVTAQLV 244 + +++ L D+R DGR +FR++ I +GSA + GE + + A++ Sbjct: 20 ITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIA 79 Query: 245 QPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVV 424 +P+++ PNEG + E SP+ F+PG P + A + + + + L++S ++++SLC+ Sbjct: 80 EPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIF 139 Query: 425 AGKHVWSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRP 541 K W + D+ L+ +G T + P Sbjct: 140 EKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLP 178
>EXOS8_HUMAN (Q96B26) Exosome complex exonuclease RRP43 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 43) (Exosome component 8) (p9) (Opa-interacting protein 2) Length = 276 Score = 79.7 bits (195), Expect = 6e-15 Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 3/164 (1%) Frame = +2 Query: 71 TVNEREFIEQALQSDLRVDGRRPFDFRKLKIAFGR---EDGSAEVELGETRVMGYVTAQL 241 TV E+ + L+ + R DGR +FR + G DGSA V+LG T V+ V A+ Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66 Query: 242 VQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCV 421 P D P++G + + P+ F G PGE A + I + S+ + E LC+ Sbjct: 67 AAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126 Query: 422 VAGKHVWSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRPECTV 553 GK VW + DL LD +G + PE T+ Sbjct: 127 SPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTI 170
>EXOS8_MOUSE (Q9D753) Exosome complex exonuclease RRP43 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 43) (Exosome component 8) Length = 276 Score = 75.9 bits (185), Expect = 8e-14 Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 3/164 (1%) Frame = +2 Query: 71 TVNEREFIEQALQSDLRVDGRRPFDFRKLKIAFGR---EDGSAEVELGETRVMGYVTAQL 241 TV E+ + L+ + R DGR +FR + G DGSA V+LG T V+ V A+ Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEF 66 Query: 242 VQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCV 421 P D P+ G + + P+ F G PGE A + I + S+ + E LC+ Sbjct: 67 AAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCI 126 Query: 422 VAGKHVWSVRVDLHILDNEGXXXXXXXXXXXXXXSTFRRPECTV 553 GK W + DL LD +G + PE T+ Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTI 170
>EXOS7_MOUSE (Q9D0M0) Exosome complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 42) (Exosome component 7) Length = 291 Score = 72.0 bits (175), Expect = 1e-12 Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 7/141 (4%) Frame = +2 Query: 80 EREFIEQALQSDLRVDGRRPFDFRKLKI---AFGREDGSAEVELGETRVMGYVTAQLVQP 250 E+ +I +Q DLRVDGR +R +++ GSA V+LG T ++ V A++ P Sbjct: 10 EKVYIVHGVQEDLRVDGRGCEVYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTP 69 Query: 251 YKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVI---DRGLRESR-AVDMESLC 418 ++PNEG L F + S A P FE GR G+ +LG + G+ ++ +VD+ SLC Sbjct: 70 KLEKPNEGYLEFFVDCSANATPEFE-GRGGD---DLGTEMLTPSTGIFNNKSSVDLRSLC 125 Query: 419 VVAGKHVWSVRVDLHILDNEG 481 + +H W + VD+ +L+ G Sbjct: 126 ISPREHCWVLYVDVLLLECGG 146
>ECX1_SULTO (Q975G8) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 247 Score = 47.4 bits (111), Expect = 3e-05 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Frame = +2 Query: 104 LQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMG--YVTAQLVQPYKDRPN 268 L + LR+DGR+P + R +KI G DGSA E+G T+V+ Y ++ + P+ Sbjct: 15 LDNGLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPD 74 Query: 269 EGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDM 406 L + +P + + P IEL +VI L + V++ Sbjct: 75 RAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVEL 120
>ECX1_METKA (Q8TYC1) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 239 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 6/98 (6%) Frame = +2 Query: 107 QSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMG--YVTAQLVQPYKDRPNE 271 + LR+DGR+P + R LKI G R DGSA +ELG +++ Y +L +K +P+ Sbjct: 11 EDGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDR 70 Query: 272 GTLAIFTEFSPMA-DPAFEPGRPGEAAIELGRVIDRGL 382 + +P + D PG P +IE+ ++ L Sbjct: 71 AVVRFRYNMAPFSVDERKRPG-PDRRSIEISKLSKEAL 107
>ECX1_SULSO (Q9UXC2) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 248 Score = 43.9 bits (102), Expect = 3e-04 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 5/106 (4%) Frame = +2 Query: 104 LQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMG--YVTAQLVQPYKDRPN 268 L R DGR+P + R +KI G DGSA E+G T+ + Y ++ + P+ Sbjct: 14 LDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPD 73 Query: 269 EGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDM 406 L + +P + + P IEL +VI L + V++ Sbjct: 74 RAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVEL 119
>ECX1_SULAC (Q4JB27) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 243 Score = 43.1 bits (100), Expect = 6e-04 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 5/101 (4%) Frame = +2 Query: 104 LQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMG--YVTAQLVQPYKDRPN 268 L++ LR DGR+ + R +KI G DGSA E+G T+V+ Y ++ + P+ Sbjct: 11 LENGLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPD 70 Query: 269 EGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRES 391 + +L + +P + + P IEL +VI L + Sbjct: 71 KASLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALEST 111
>RNPH_THETN (Q8RC30) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 261 Score = 42.4 bits (98), Expect = 0.001 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 9/130 (6%) Frame = +2 Query: 119 RVDGRRPFDFRKLKIA--FGR-EDGSAEVELGETRVMGYVTAQ-LVQPYKDRPNEGTLAI 286 R+DGR + R +KI F + +GS +E+GET+V+ + + V P++ +G + Sbjct: 3 RIDGREFNELRPIKITRNFNKFAEGSVLIEMGETKVICTASIEDKVPPFQKGTGKGWITS 62 Query: 287 FTEFSPMADPAFEP-----GRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHVWSVR 451 P A P GRP +E+ R+I R LR VD+E+L + +W Sbjct: 63 EYGMLPRATEVRNPREVTKGRPSGRTMEIQRLIGRSLR--AVVDLEAL---GERTIW--- 114 Query: 452 VDLHILDNEG 481 +D ++ +G Sbjct: 115 IDCDVIQADG 124
>ECX1_PYRKO (Q5JIR6) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 249 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 5/101 (4%) Frame = +2 Query: 119 RVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMG--YVTAQLVQPYKDRPNEGTLA 283 R+DGR+ ++ R +K+ G DGSA VE G+ +V+ Y ++ + RP+ L Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILR 76 Query: 284 IFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDM 406 + +P + + P ++E+ +VI L + + M Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALLLHM 117
>ECX1_PYRHO (O59223) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 249 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 5/101 (4%) Frame = +2 Query: 119 RVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMG--YVTAQLVQPYKDRPNEGTLA 283 R+DGR+ ++ R +K+ G +GSA +E G +++ Y +L + RP+ L Sbjct: 17 RIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILR 76 Query: 284 IFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDM 406 + +P + + P +IE+ +VI L + ++M Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEM 117
>ECX1_PYRAB (Q9V119) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 249 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 5/101 (4%) Frame = +2 Query: 119 RVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMG--YVTAQLVQPYKDRPNEGTLA 283 R+DGR+ ++ R +K+ G +GSA +E G+ +++ Y +L + RP+ L Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76 Query: 284 IFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDM 406 + +P + + P +IE+ +VI L + ++M Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEM 117
>ECX1_AERPE (Q9YC03) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 246 Score = 41.2 bits (95), Expect = 0.002 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%) Frame = +2 Query: 98 QALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMG--YVTAQLVQPYKDR 262 + ++ R DGR P D R +++ G DGSA VE G TRV+ Y + Q + Sbjct: 10 ELIRDGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVL 69 Query: 263 PNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGL 382 P+ L + +P + + P IEL +V+ L Sbjct: 70 PDRAALRVRYHMAPFSTDERKSPAPSRREIELSKVVREAL 109
>ECX1_PYRFU (Q8U0L9) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 250 Score = 40.0 bits (92), Expect = 0.005 Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 5/101 (4%) Frame = +2 Query: 119 RVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMG--YVTAQLVQPYKDRPNEGTLA 283 R+DGR+ ++ R +K+ G +GSA +E G+ +++ Y ++ + RP+ L Sbjct: 17 RLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILR 76 Query: 284 IFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRAVDM 406 + +P + + P +IE+ +VI L + ++M Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEM 117
>ECX1_PYRAE (Q8ZVM9) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 246 Score = 39.3 bits (90), Expect = 0.008 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 7/100 (7%) Frame = +2 Query: 104 LQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMG--YVTAQLVQPYKDRPN 268 LQ+ +R DGR P R++KIA G DGSA V G T + Y ++ + P+ Sbjct: 9 LQNGVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPD 68 Query: 269 EGTLAIFTEFSPMA--DPAFEPGRPGEAAIELGRVIDRGL 382 G + + +P + D P P IE+ +++ L Sbjct: 69 RGVMRVRYHMAPFSTKDERKSP-TPSRREIEISKILREAL 107
>EXOS4_HUMAN (Q9NPD3) Exosome complex exonuclease RRP41 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 41) (Exosome component 4) (p12A) Length = 244 Score = 33.5 bits (75), Expect = 0.46 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Frame = +2 Query: 119 RVDGRRPFDFRKLKI---AFGREDGSAEVELGETRVMGYV 229 RVDGRR + RK++ F + DGSA +E G T+ + V Sbjct: 12 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV 51
>EXOS4_MOUSE (Q921I9) Exosome complex exonuclease RRP41 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 41) (Exosome component 4) Length = 244 Score = 33.1 bits (74), Expect = 0.60 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Frame = +2 Query: 119 RVDGRRPFDFRKLKI---AFGREDGSAEVELGETRVMGYV 229 R+DGRR + RK++ F + DGSA +E G T+ + V Sbjct: 12 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV 51
>ECX1_METMA (Q8PTT8) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 493 Score = 32.7 bits (73), Expect = 0.79 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +2 Query: 77 NEREFIEQALQSDLRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVM 220 N+ E + LR+DGRR + R +KI G R DGS +E G +++ Sbjct: 3 NKPENLTLITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKIL 53
>RNPH_METCA (Q602N9) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 243 Score = 32.3 bits (72), Expect = 1.0 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 9/109 (8%) Frame = +2 Query: 116 LRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTA-QLVQPYKDRPNEGTLA 283 +R GRRP R++ +GS VE G+TRV+ + + V P+ G + Sbjct: 1 MRPSGRRPDQLRRIAFTCNYTKHAEGSVLVEFGDTRVICTASVEERVPPFLKGKGSGWIT 60 Query: 284 IFTEFSPMA-----DPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESL 415 P A G+ G +E+ R+I R LR A+++E+L Sbjct: 61 AEYGMLPRATHERTGREAARGKQGGRTMEIQRLIGRSLR--AALNLEAL 107
>RNPH_BIFLO (Q8G7I0) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 248 Score = 32.3 bits (72), Expect = 1.0 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 10/132 (7%) Frame = +2 Query: 116 LRVDGRRPFDFRKLKIAFGRED---GSAEVELGETRVMGYVTAQLVQPYKDRPNEGTLAI 286 +R DGR+ + R ++I D GS +E G TRVM T P + R + G + Sbjct: 8 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVP-RWRKDSGLGWV 66 Query: 287 FTEFSPM-------ADPAFEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHVWS 445 E+S + D G+ G E+ R+I R LR +DM++L G++ Sbjct: 67 TAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLR--GVIDMKAL----GEN--Q 118 Query: 446 VRVDLHILDNEG 481 +++D +L +G Sbjct: 119 IQLDCDVLQADG 130
>ECX1_ARCFU (O29757) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 258 Score = 32.3 bits (72), Expect = 1.0 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 5/96 (5%) Frame = +2 Query: 95 EQALQSDLRVDGRRPFDFRKLKI---AFGREDGSAEVELGETRVMGYVTA-QLVQP-YKD 259 E+ + LR+DGR+ + R +KI R DGS +E+G+ +V+ V + V P + Sbjct: 9 EKLIVDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQ 68 Query: 260 RPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRV 367 P++ + +P + + P +IE+ +V Sbjct: 69 DPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEISKV 104
>SOX8_HUMAN (P57073) Transcription factor SOX-8| Length = 446 Score = 32.3 bits (72), Expect = 1.0 Identities = 29/97 (29%), Positives = 43/97 (44%) Frame = +2 Query: 56 PRWRPTVNEREFIEQALQSDLRVDGRRPFDFRKLKIAFGREDGSAEVELGETRVMGYVTA 235 P PT + E + + +L+++GRRP D + I F D S EL + VMG + A Sbjct: 224 PPTPPTTPKTELQQAGAKPELKLEGRRPVDSGRQNIDFSNVDIS---EL-SSEVMGTMDA 279 Query: 236 QLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGEA 346 V F ++ P+ PA P PG+A Sbjct: 280 FDVHE------------FDQYLPLGGPA--PPEPGQA 302
>RNPH_NOCFA (Q5Z0V1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 257 Score = 32.0 bits (71), Expect = 1.3 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 11/132 (8%) Frame = +2 Query: 119 RVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQPYKDRPNEGTLAIF 289 R DGR + R+++I G GS VE G+TRVM TA + + + L Sbjct: 4 RADGRADDELREVRITRGFTTHPAGSVLVEFGQTRVM--CTASVTEGVPAWRRDSGLGWL 61 Query: 290 TEFSPMADPAFE--------PGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHVWS 445 T M A GR G E+ R++ R LR +D+ ++ G++ + Sbjct: 62 TAEYAMLPAATHTRSGRESVKGRVGGRTQEISRLVGRSLR--ACIDLAAI----GEN--T 113 Query: 446 VRVDLHILDNEG 481 + +D +L +G Sbjct: 114 IAIDCDVLQADG 125
>RPOA_CLOAB (Q97EK6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 315 Score = 32.0 bits (71), Expect = 1.3 Identities = 22/66 (33%), Positives = 34/66 (51%) Frame = +2 Query: 110 SDLRVDGRRPFDFRKLKIAFGREDGSAEVELGETRVMGYVTAQLVQPYKDRPNEGTLAIF 289 +D+R DG + L IA EDG +E+ R GYVT + +D GT+A+ Sbjct: 110 ADIRTDGSVEVINKDLHIATLDEDGKLYMEIEVNRGRGYVTQN--KNKRDDMPIGTIAVD 167 Query: 290 TEFSPM 307 + +SP+ Sbjct: 168 SIYSPI 173
>CDN1A_FELCA (O19002) Cyclin-dependent kinase inhibitor 1 (p21) (CDK-interacting| protein 1) Length = 163 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = -3 Query: 447 TDQTCFPATTHRDSISTAL-LSLRPRSMTRPNSIAASPGRPGSKAGSAMGENSV 289 T T P T D + +L +L P S RP ASPG PG+ G + S+ Sbjct: 96 TSSTLLPGTAREDHLDLSLSCTLMPHSPERPE---ASPGAPGTSQGRKRRQTSM 146
>CT075_MOUSE (P59383) Protein C20orf75 homolog precursor| Length = 733 Score = 30.4 bits (67), Expect = 3.9 Identities = 26/61 (42%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = -2 Query: 355 LNSCFPRSPR-LKGRISHGRELGEDGQRALVRPVLVRLDQLGSHITHHTRFAELHLRRAI 179 L SC PR+ R L G SH RAL PVL RL +L HH R + LH R Sbjct: 76 LPSCLPRTLRSLDG--SHNL------LRALSEPVLGRLPELRVLTLHHNRISVLHWGRDT 127 Query: 178 L 176 L Sbjct: 128 L 128
>HEM3_METAC (Q8TT56) Probable porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 317 Score = 30.4 bits (67), Expect = 3.9 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Frame = +2 Query: 65 RPTVNEREFIEQALQSDLRVDGRRPFDFRKLKIAFGREDGSAEVELGETRVMGYVTAQLV 244 R T R + + +LR + D R K+ G+ DG + G R+ + +++ Sbjct: 125 RRTAQIRRYRPDLITQELRGN----IDTRLRKLKEGQYDGILLAKAGLERMGWEIDGEIL 180 Query: 245 QP--YKDRPNEGTLAIFTEFSPMADPA 319 P + PN+GT+A+ T P + A Sbjct: 181 SPDFFCPSPNQGTVAVVTRADPEIEAA 207
>MUTS_STRT2 (Q5M6I1) DNA mismatch repair protein mutS| Length = 852 Score = 30.4 bits (67), Expect = 3.9 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 16/125 (12%) Frame = +2 Query: 65 RPTVNEREFIEQAL-----------QSDLRVDGRRPFDFRKL--KIAFGREDGSAEVELG 205 RP VN+ IE+ +SDL + +D +L +++FG+ + ++LG Sbjct: 297 RPLVNQASIIERQNIIQVFLDNFFERSDLTESLKGVYDIERLASRVSFGKANPKDLIQLG 356 Query: 206 ETRVMGYVTAQLVQPYKDRPNEGTLA---IFTEFSPMADPAFEPGRPGEAAIELGRVIDR 376 T V +++ + D G L E + A +P P A I G +I Sbjct: 357 HTLAQVPVIKAILESFNDDALSGLLQELDALPELESLIRSAIDPDAP--ATITEGGIIRD 414 Query: 377 GLRES 391 G E+ Sbjct: 415 GFDET 419
>MUTS_STRT1 (Q5M1Z0) DNA mismatch repair protein mutS| Length = 852 Score = 30.4 bits (67), Expect = 3.9 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 16/125 (12%) Frame = +2 Query: 65 RPTVNEREFIEQAL-----------QSDLRVDGRRPFDFRKL--KIAFGREDGSAEVELG 205 RP VN+ IE+ +SDL + +D +L +++FG+ + ++LG Sbjct: 297 RPLVNQASIIERQNIIQVFLDNFFERSDLAESLKGVYDIERLASRVSFGKANPKDLIQLG 356 Query: 206 ETRVMGYVTAQLVQPYKDRPNEGTLA---IFTEFSPMADPAFEPGRPGEAAIELGRVIDR 376 T V +++ + D G L E + A +P P A I G +I Sbjct: 357 HTLAQVPVIKAILESFNDDALSGLLQELDALPELESLIRSAIDPDAP--ATITEGGIIRD 414 Query: 377 GLRES 391 G E+ Sbjct: 415 GFDET 419
>SEM5B_MOUSE (Q60519) Semaphorin-5B precursor (Semaphorin G) (Sema G)| Length = 1093 Score = 25.0 bits (53), Expect(2) = 4.8 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%) Frame = +3 Query: 396 PWI-WNPCVLLQGSMSGRCV 452 PW W PC L G SG C+ Sbjct: 556 PWSPWKPCEHLDGDNSGSCL 575 Score = 23.5 bits (49), Expect(2) = 4.8 Identities = 9/28 (32%), Positives = 14/28 (50%) Frame = +1 Query: 490 RCS*HRCIGSFVYIPEA*MHGWWG*WSA 573 RC C+G ++I +G W WS+ Sbjct: 587 RCGGLECLGPSIHIANCSRNGAWTAWSS 614
>RRP41_SCHPO (O42872) Putative exosome complex exonuclease RRP41 (EC 3.1.13.-)| (Ribosomal RNA-processing protein 41) Length = 242 Score = 30.0 bits (66), Expect = 5.1 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 3/38 (7%) Frame = +2 Query: 116 LRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVM 220 LR DGRR + R + G E+GSA +ELG T+V+ Sbjct: 12 LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVL 49
>ZCHC8_MOUSE (Q9CYA6) Zinc finger CCHC domain-containing protein 8| Length = 709 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/17 (76%), Positives = 13/17 (76%) Frame = -1 Query: 62 TAGPSSRCSPAAGARVL 12 TAGP CSPAAGA VL Sbjct: 593 TAGPEPSCSPAAGAAVL 609
>RPOA_PROAC (Q6A6R1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 338 Score = 29.6 bits (65), Expect = 6.7 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Frame = +2 Query: 152 KLKIAFGREDGSAEVELGETRVMGYVTAQLVQPYKDRPNE--GTLAIFTEFSPMADPAFE 325 +L IA +DG E+EL R GYV++ L D PN G +A+ + +SP+ ++ Sbjct: 122 ELHIATLNDDGRFEMELIVERGRGYVSSAL----NDDPNAEIGRIAVDSIYSPVLKVTYK 177 Query: 326 PGRPGEAAIELGRVIDRGLRESRAVDMES 412 +E RV R + VD+E+ Sbjct: 178 --------VEATRVEQRTDFDKLVVDVET 198
>JHD2B_HUMAN (Q7LBC6) JmjC domain-containing histone demethylation protein 2B| (EC 1.14.11.-) (Jumonji domain-containing protein 1B) (Nuclear protein 5qNCA) Length = 1761 Score = 29.6 bits (65), Expect = 6.7 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = -3 Query: 453 TRTDQTCFPATTHRDSISTALLSLRPRSMTRPNSIAASPGRPGSKAGSAMGENSVKMASV 274 T ++ ++ RDS +L SL + + S+ + +PGSKAGS++ + V S+ Sbjct: 541 TTVSESLADDSSSRDSFKQSLESLSS-GLCKGRSVLGTDTKPGSKAGSSV-DRKVPAESM 598 Query: 273 PSL 265 P+L Sbjct: 599 PTL 601
>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor| Length = 1093 Score = 25.0 bits (53), Expect(2) = 7.9 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%) Frame = +3 Query: 396 PWI-WNPCVLLQGSMSGRCV 452 PW W PC L G SG C+ Sbjct: 556 PWSPWQPCEHLDGDNSGSCL 575 Score = 22.7 bits (47), Expect(2) = 7.9 Identities = 9/28 (32%), Positives = 14/28 (50%) Frame = +1 Query: 490 RCS*HRCIGSFVYIPEA*MHGWWG*WSA 573 RC C+G ++I +G W WS+ Sbjct: 587 RCGGLDCLGPAIHIANCSRNGAWTPWSS 614
>EXOS4_CAEEL (Q17533) Putative exosome complex exonuclease RRP41 (EC 3.1.13.-)| (Ribosomal RNA-processing protein 41) Length = 240 Score = 29.3 bits (64), Expect = 8.7 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Frame = +2 Query: 119 RVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQPYKDRPN---EGTL 280 R+DGRRP R + G +GS +E G T+V+ + PY+ + + E Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVL----CAVYGPYEGKSSKRIEDKC 65 Query: 281 AIFTEFS 301 AI ++S Sbjct: 66 AIVCQYS 72
>ALS_RAT (P35859) Insulin-like growth factor-binding protein complex acid| labile chain precursor (ALS) Length = 603 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Frame = -2 Query: 535 PECRQSCQCSDVSCIDEIPLIVQNVKVNTHRPDMLPCNNTQGFHIHG---SALP*ATIND 365 P+C +C CS DE+ + + K TH PD +P +T+ + G S++P A + Sbjct: 39 PQCPVACTCSHDDYTDELSVFCSS-KNLTHLPDDIPV-STRALWLDGNNLSSIPSAAFQN 96 Query: 364 TAQLN 350 + L+ Sbjct: 97 LSSLD 101
>RNPH_IDILO (Q5QYL5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 237 Score = 29.3 bits (64), Expect = 8.7 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 9/131 (6%) Frame = +2 Query: 116 LRVDGRRPFDFRKLKIAFG---REDGSAEVELGETRVMGYVTAQLVQP-YKDRPNEGTLA 283 +R GR R + I +GS +E GET+V+ + + P + +G + Sbjct: 1 MRPSGRTAQQIRPVTITRNFTKHAEGSVLIEFGETKVLCNASVERGVPRFLKGKGQGWVT 60 Query: 284 IFTEFSPMADPA-----FEPGRPGEAAIELGRVIDRGLRESRAVDMESLCVVAGKHVWSV 448 P A G+ G +E+ R+I R LR +DM +L G+H ++ Sbjct: 61 AEYSMLPRATHTRSAREASRGKQGGRTLEIQRLIGRSLR--TCIDMSAL----GEH--TI 112 Query: 449 RVDLHILDNEG 481 +D ++ +G Sbjct: 113 TIDCDVIQADG 123
>MMP11_HUMAN (P24347) Stromelysin-3 precursor (EC 3.4.24.-) (ST3) (SL-3) (Matrix| metalloproteinase-11) (MMP-11) Length = 488 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/24 (58%), Positives = 15/24 (62%) Frame = -2 Query: 100 LLDELPLVHRRAPPRVHHLVARRR 29 LL PL+ R PP VHHL A RR Sbjct: 23 LLQPPPLLARALPPDVHHLHAERR 46 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,561,029 Number of Sequences: 219361 Number of extensions: 1595464 Number of successful extensions: 5227 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 4855 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5199 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
