ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart41g06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466155.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1654 Score = 434 bits (219), Expect = e-118 Identities = 450/527 (85%) Strand = Plus / Plus Query: 58 gcggtggcgcccgacggtgaacgagcgggagttcatcgagcaagccctccagtcggacct 117 |||||||| ||| |||||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct: 93 gcggtggcaccccacggtgaacgagcgcgagttcatcgagcgcgccctccagtccgacct 152 Query: 118 ccgcgtcgacggccgccgccccttcgacttccgcaagctcaaaatcgcattcggcaggga 177 |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 153 ccgcgtcgacggccgccgccccttcgacttccgccgcctcaagatcctcttcggcaggga 212 Query: 178 ggatggctcggcggaggtggagctcggcgaaacgcgtgtgatgggttatgtgactgccca 237 ||| ||||||||||||||| ||||||| || ||||| || ||||| || | || || || Sbjct: 213 ggacggctcggcggaggtgcagctcggggacacgcgcgtcatgggctacgccacggcgca 272 Query: 238 attggtccagccgtacaaggacaggcctaacgagggcacgctggccatcttcaccgagtt 297 |||| |||||||||||||||||||| |||||||| ||||| || || ||||||||||| Sbjct: 273 gctggtgcagccgtacaaggacaggcccaacgaggggacgctcgcgatattcaccgagtt 332 Query: 298 ctcgcccatggctgatcctgcctttgagccggggcgacctggggaagcagctattgagtt 357 |||||||||||| || || ||||| ||||||||||| || ||||| | || || ||| | Sbjct: 333 ctcgcccatggccgaccccgccttcgagccggggcggccaggggagtcggcgatcgagct 392 Query: 358 gggccgtgtcattgatcgtggcctaagggagagcagagccgtggatatggaatccctgtg 417 || || ||| | ||||| ||||||||||||||| ||||||| |||||||| |||||||| Sbjct: 393 cggtcgcgtcgtcgatcgcggcctaagggagagccgagccgtcgatatggagtccctgtg 452 Query: 418 tgttgttgcagggaagcatgtctggtcggtgcgtgttgaccttcacattctggacaatga 477 ||||||||| ||||||||||| ||||||||||| || |||||||| || |||| |||| Sbjct: 453 tgttgttgctgggaagcatgtttggtcggtgcgcgtcgaccttcatatcttggataatgg 512 Query: 478 ggggaatctcatcgatgcagctaacatcgctgcattggcagctttgtctacattccggag 537 ||||||||||| |||||||||||||| || || |||||||| ||||||| |||||||| Sbjct: 513 agggaatctcattgatgcagctaacattgccgcgctggcagctctgtctactttccggag 572 Query: 538 gcctgaatgcacggttggtggggatgatggtcagcaagttacagtac 584 ||||||||| ||||| || ||||| |||||||| || |||||||||| Sbjct: 573 gcctgaatgtacggtcggaggggaagatggtcaacaggttacagtac 619
>dbj|AK071257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083L07, full insert sequence Length = 1654 Score = 426 bits (215), Expect = e-116 Identities = 449/527 (85%) Strand = Plus / Plus Query: 58 gcggtggcgcccgacggtgaacgagcgggagttcatcgagcaagccctccagtcggacct 117 |||||||| ||| |||||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct: 93 gcggtggcaccccacggtgaacgagcgcgagttcatcgagcgcgccctccagtccgacct 152 Query: 118 ccgcgtcgacggccgccgccccttcgacttccgcaagctcaaaatcgcattcggcaggga 177 |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| Sbjct: 153 ccgcgtcgacggccgccgccccttcgacttccgccgcctcaagatcctcttcggcaggga 212 Query: 178 ggatggctcggcggaggtggagctcggcgaaacgcgtgtgatgggttatgtgactgccca 237 ||| ||||||||||||||| ||||||| || ||||| || ||||| | | || || || Sbjct: 213 ggacggctcggcggaggtgcagctcggggacacgcgcgtcatgggctgcgccacggcgca 272 Query: 238 attggtccagccgtacaaggacaggcctaacgagggcacgctggccatcttcaccgagtt 297 |||| |||||||||||||||||||| |||||||| ||||| || || ||||||||||| Sbjct: 273 gctggtgcagccgtacaaggacaggcccaacgaggggacgctcgcgatattcaccgagtt 332 Query: 298 ctcgcccatggctgatcctgcctttgagccggggcgacctggggaagcagctattgagtt 357 |||||||||||| || || ||||| ||||||||||| || ||||| | || || ||| | Sbjct: 333 ctcgcccatggccgaccccgccttcgagccggggcggccaggggagtcggcgatcgagct 392 Query: 358 gggccgtgtcattgatcgtggcctaagggagagcagagccgtggatatggaatccctgtg 417 || || ||| | ||||| ||||||||||||||| ||||||| |||||||| |||||||| Sbjct: 393 cggtcgcgtcgtcgatcgcggcctaagggagagccgagccgtcgatatggagtccctgtg 452 Query: 418 tgttgttgcagggaagcatgtctggtcggtgcgtgttgaccttcacattctggacaatga 477 ||||||||| ||||||||||| ||||||||||| || |||||||| || |||| |||| Sbjct: 453 tgttgttgctgggaagcatgtttggtcggtgcgcgtcgaccttcatatcttggataatgg 512 Query: 478 ggggaatctcatcgatgcagctaacatcgctgcattggcagctttgtctacattccggag 537 ||||||||||| |||||||||||||| || || |||||||| ||||||| |||||||| Sbjct: 513 agggaatctcattgatgcagctaacattgccgcgctggcagctctgtctactttccggag 572 Query: 538 gcctgaatgcacggttggtggggatgatggtcagcaagttacagtac 584 ||||||||| ||||| || ||||| |||||||| || |||||||||| Sbjct: 573 gcctgaatgtacggtcggaggggaagatggtcaacaggttacagtac 619
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 139 bits (70), Expect = 1e-29 Identities = 88/94 (93%) Strand = Plus / Minus Query: 58 gcggtggcgcccgacggtgaacgagcgggagttcatcgagcaagccctccagtcggacct 117 |||||||| ||| |||||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct: 20750943 gcggtggcaccccacggtgaacgagcgcgagttcatcgagcgcgccctccagtccgacct 20750884 Query: 118 ccgcgtcgacggccgccgccccttcgacttccgc 151 |||||||||||||||||||||||||||||||||| Sbjct: 20750883 ccgcgtcgacggccgccgccccttcgacttccgc 20750850 Score = 135 bits (68), Expect = 2e-28 Identities = 146/172 (84%) Strand = Plus / Minus Query: 171 gcagggaggatggctcggcggaggtggagctcggcgaaacgcgtgtgatgggttatgtga 230 |||||||||| ||||||||||||||| ||||||| || ||||| || ||||| || | | Sbjct: 20750731 gcagggaggacggctcggcggaggtgcagctcggggacacgcgcgtcatgggctacgcca 20750672 Query: 231 ctgcccaattggtccagccgtacaaggacaggcctaacgagggcacgctggccatcttca 290 | || || |||| |||||||||||||||||||| |||||||| ||||| || || |||| Sbjct: 20750671 cggcgcagctggtgcagccgtacaaggacaggcccaacgaggggacgctcgcgatattca 20750612 Query: 291 ccgagttctcgcccatggctgatcctgcctttgagccggggcgacctgggga 342 ||||||||||||||||||| || || ||||| ||||||||||| || ||||| Sbjct: 20750611 ccgagttctcgcccatggccgaccccgccttcgagccggggcggccagggga 20750560 Score = 105 bits (53), Expect = 2e-19 Identities = 92/105 (87%) Strand = Plus / Minus Query: 480 ggaatctcatcgatgcagctaacatcgctgcattggcagctttgtctacattccggaggc 539 |||||||||| |||||||||||||| || || |||||||| ||||||| |||||||||| Sbjct: 20750236 ggaatctcattgatgcagctaacattgccgcgctggcagctctgtctactttccggaggc 20750177 Query: 540 ctgaatgcacggttggtggggatgatggtcagcaagttacagtac 584 ||||||| ||||| || ||||| |||||||| || |||||||||| Sbjct: 20750176 ctgaatgtacggtcggaggggaagatggtcaacaggttacagtac 20750132 Score = 103 bits (52), Expect = 6e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 383 agggagagcagagccgtggatatggaatccctgtgtgttgttgcagggaagcatgtctgg 442 ||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||| ||| Sbjct: 20750427 agggagagccgagccgtcgatatggagtccctgtgtgttgttgctgggaagcatgtttgg 20750368 Query: 443 tcggtgcgtgttgaccttca 462 |||||||| || |||||||| Sbjct: 20750367 tcggtgcgcgtcgaccttca 20750348
>dbj|AP004775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0451A10 Length = 137046 Score = 139 bits (70), Expect = 1e-29 Identities = 88/94 (93%) Strand = Plus / Minus Query: 58 gcggtggcgcccgacggtgaacgagcgggagttcatcgagcaagccctccagtcggacct 117 |||||||| ||| |||||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct: 102049 gcggtggcaccccacggtgaacgagcgcgagttcatcgagcgcgccctccagtccgacct 101990 Query: 118 ccgcgtcgacggccgccgccccttcgacttccgc 151 |||||||||||||||||||||||||||||||||| Sbjct: 101989 ccgcgtcgacggccgccgccccttcgacttccgc 101956 Score = 135 bits (68), Expect = 2e-28 Identities = 146/172 (84%) Strand = Plus / Minus Query: 171 gcagggaggatggctcggcggaggtggagctcggcgaaacgcgtgtgatgggttatgtga 230 |||||||||| ||||||||||||||| ||||||| || ||||| || ||||| || | | Sbjct: 101837 gcagggaggacggctcggcggaggtgcagctcggggacacgcgcgtcatgggctacgcca 101778 Query: 231 ctgcccaattggtccagccgtacaaggacaggcctaacgagggcacgctggccatcttca 290 | || || |||| |||||||||||||||||||| |||||||| ||||| || || |||| Sbjct: 101777 cggcgcagctggtgcagccgtacaaggacaggcccaacgaggggacgctcgcgatattca 101718 Query: 291 ccgagttctcgcccatggctgatcctgcctttgagccggggcgacctgggga 342 ||||||||||||||||||| || || ||||| ||||||||||| || ||||| Sbjct: 101717 ccgagttctcgcccatggccgaccccgccttcgagccggggcggccagggga 101666 Score = 105 bits (53), Expect = 2e-19 Identities = 92/105 (87%) Strand = Plus / Minus Query: 480 ggaatctcatcgatgcagctaacatcgctgcattggcagctttgtctacattccggaggc 539 |||||||||| |||||||||||||| || || |||||||| ||||||| |||||||||| Sbjct: 101342 ggaatctcattgatgcagctaacattgccgcgctggcagctctgtctactttccggaggc 101283 Query: 540 ctgaatgcacggttggtggggatgatggtcagcaagttacagtac 584 ||||||| ||||| || ||||| |||||||| || |||||||||| Sbjct: 101282 ctgaatgtacggtcggaggggaagatggtcaacaggttacagtac 101238 Score = 103 bits (52), Expect = 6e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 383 agggagagcagagccgtggatatggaatccctgtgtgttgttgcagggaagcatgtctgg 442 ||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||| ||| Sbjct: 101533 agggagagccgagccgtcgatatggagtccctgtgtgttgttgctgggaagcatgtttgg 101474 Query: 443 tcggtgcgtgttgaccttca 462 |||||||| || |||||||| Sbjct: 101473 tcggtgcgcgtcgaccttca 101454
>dbj|AP007293.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34C12, TM0361, complete sequence Length = 108947 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 284 atcttcaccgagttctcgcccatggctgatcctgcctttgagcc 327 |||||||| |||||||| ||||||||||||||| |||| ||||| Sbjct: 6367 atcttcactgagttctctcccatggctgatccttccttcgagcc 6410
>gb|BT017852.1| Zea mays clone EL01N0511C01.c mRNA sequence Length = 1274 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 117 tccgcgtcgacggccgccgcccc 139 ||||||||||||||||||||||| Sbjct: 83 tccgcgtcgacggccgccgcccc 105
>gb|AC110576.12| Mus musculus chromosome 8, clone RP23-329K17, complete sequence Length = 224141 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 541 tgaatgcacggttggtggggatg 563 ||||||||||||||||||||||| Sbjct: 122514 tgaatgcacggttggtggggatg 122536
>emb|AL080275.20|HSDJ149L1 Human DNA sequence from clone RP1-149L1 on chromosome 6q12-13 Contains the 5' end of the COL9A1 gene for collagen IX alpha 1 and a CpG island, complete sequence Length = 113983 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 297 tctcgcccatggctgatcctgccttt 322 ||||||||||| |||||||||||||| Sbjct: 40152 tctcgcccatgtctgatcctgccttt 40177
>gb|AF036113.1|HSCOL9AC04 Homo sapiens collagen type IX alpha 1 chain (COL9A1) gene, exons 8, 9 and 10 Length = 1104 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 297 tctcgcccatggctgatcctgccttt 322 ||||||||||| |||||||||||||| Sbjct: 502 tctcgcccatgtctgatcctgccttt 477
>ref|NM_112136.3| Arabidopsis thaliana 3'-5'-exoribonuclease/ RNA binding AT3G12990 transcript variant AT3G12990.1 mRNA, complete cds Length = 1155 Score = 42.1 bits (21), Expect = 2.0 Identities = 42/49 (85%) Strand = Plus / Plus Query: 284 atcttcaccgagttctcgcccatggctgatcctgcctttgagccggggc 332 |||||||||||||| || || ||||||||||| | |||||||| |||| Sbjct: 356 atcttcaccgagttttctccaatggctgatccatcgtttgagccagggc 404
>ref|NM_001035607.1| Arabidopsis thaliana 3'-5'-exoribonuclease/ RNA binding AT3G12990 transcript variant AT3G12990.2 mRNA, complete cds Length = 1062 Score = 42.1 bits (21), Expect = 2.0 Identities = 42/49 (85%) Strand = Plus / Plus Query: 284 atcttcaccgagttctcgcccatggctgatcctgcctttgagccggggc 332 |||||||||||||| || || ||||||||||| | |||||||| |||| Sbjct: 279 atcttcaccgagttttctccaatggctgatccatcgtttgagccagggc 327
>gb|AC104540.9| Mus musculus chromosome 5, clone RP23-301P15, complete sequence Length = 221681 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 414 tgtgtgttgttgcagggaagc 434 ||||||||||||||||||||| Sbjct: 66850 tgtgtgttgttgcagggaagc 66870
>emb|AL136123.19| Human DNA sequence from clone RP11-236M15 on chromosome 13 Contains a meningioma expressed antigen 6 (coiled-coil proline-rich) (MGEA6) pseudogene, the C13orf1 gene for chromosome 13 open reading frame 1 and a CpG island, complete sequence Length = 178151 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 tggaatccctgtgtgttgttg 425 ||||||||||||||||||||| Sbjct: 73079 tggaatccctgtgtgttgttg 73059
>emb|BX826020.1|CNS0A54T Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL7ZC01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1127 Score = 42.1 bits (21), Expect = 2.0 Identities = 42/49 (85%) Strand = Plus / Plus Query: 284 atcttcaccgagttctcgcccatggctgatcctgcctttgagccggggc 332 |||||||||||||| || || ||||||||||| | |||||||| |||| Sbjct: 356 atcttcaccgagttttctccaatggctgatccatcgtttgagccagggc 404
>gb|AY084328.1| Arabidopsis thaliana clone 104182 mRNA, complete sequence Length = 1143 Score = 42.1 bits (21), Expect = 2.0 Identities = 42/49 (85%) Strand = Plus / Plus Query: 284 atcttcaccgagttctcgcccatggctgatcctgcctttgagccggggc 332 |||||||||||||| || || ||||||||||| | |||||||| |||| Sbjct: 343 atcttcaccgagttttctccaatggctgatccatcgtttgagccagggc 391
>gb|BT003077.1| Arabidopsis thaliana At3g12990 gene, complete cds Length = 924 Score = 42.1 bits (21), Expect = 2.0 Identities = 42/49 (85%) Strand = Plus / Plus Query: 284 atcttcaccgagttctcgcccatggctgatcctgcctttgagccggggc 332 |||||||||||||| || || ||||||||||| | |||||||| |||| Sbjct: 247 atcttcaccgagttttctccaatggctgatccatcgtttgagccagggc 295
>dbj|AB026645.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6 Length = 81020 Score = 42.1 bits (21), Expect = 2.0 Identities = 42/49 (85%) Strand = Plus / Plus Query: 284 atcttcaccgagttctcgcccatggctgatcctgcctttgagccggggc 332 |||||||||||||| || || ||||||||||| | |||||||| |||| Sbjct: 47103 atcttcaccgagttttctccaatggctgatccatcgtttgagccagggc 47151
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 266 aacgagggcacgctggccatc 286 ||||||||||||||||||||| Sbjct: 1016010 aacgagggcacgctggccatc 1015990
>ref|XM_525067.1| PREDICTED: Pan troglodytes LOC469683 (LOC469683), mRNA Length = 3030 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ccgacggtgaacgagcggga 87 |||||||||||||||||||| Sbjct: 22 ccgacggtgaacgagcggga 41
>gb|AC159614.7| Mus musculus chromosome 1, clone RP24-305O23, complete sequence Length = 156924 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gttgaccttcacattctgga 471 |||||||||||||||||||| Sbjct: 74052 gttgaccttcacattctgga 74033
>ref|XM_953884.1| Neurospora crassa OR74A hypothetical protein (NCU09030.1) partial mRNA Length = 3081 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 cggcgagcaacgagatgatg 52 |||||||||||||||||||| Sbjct: 2670 cggcgagcaacgagatgatg 2689
>ref|XM_331421.1| Neurospora crassa OR74A hypothetical protein (NCU09030.1) partial mRNA Length = 3081 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 cggcgagcaacgagatgatg 52 |||||||||||||||||||| Sbjct: 2670 cggcgagcaacgagatgatg 2689
>gb|BC068608.1| Homo sapiens cDNA clone IMAGE:5296989, with apparent retained intron Length = 2765 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ccgacggtgaacgagcggga 87 |||||||||||||||||||| Sbjct: 662 ccgacggtgaacgagcggga 681
>ref|NM_010552.2| Mus musculus interleukin 17A (Il17a), mRNA Length = 1172 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gttgaccttcacattctgga 471 |||||||||||||||||||| Sbjct: 208 gttgaccttcacattctgga 189
>emb|CR354398.17| Zebrafish DNA sequence from clone CH211-142C14 in linkage group 7, complete sequence Length = 180088 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 acaatgaggggaatctcatc 490 |||||||||||||||||||| Sbjct: 160913 acaatgaggggaatctcatc 160894
>gb|BC113869.1| Homo sapiens MAP/microtubule affinity-regulating kinase 1, mRNA (cDNA clone MGC:126513 IMAGE:40036731), complete cds Length = 3951 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ccgacggtgaacgagcggga 87 |||||||||||||||||||| Sbjct: 198 ccgacggtgaacgagcggga 217
>gb|BC114478.1| Homo sapiens MAP/microtubule affinity-regulating kinase 1, mRNA (cDNA clone MGC:126512 IMAGE:40036730), complete cds Length = 3951 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ccgacggtgaacgagcggga 87 |||||||||||||||||||| Sbjct: 198 ccgacggtgaacgagcggga 217
>emb|AL845544.11| Zebrafish DNA sequence from clone BUSM1-133F4 in linkage group 7 Contains three CpG islands, complete sequence Length = 110786 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 acaatgaggggaatctcatc 490 |||||||||||||||||||| Sbjct: 107735 acaatgaggggaatctcatc 107754
>gb|AC096640.2| Homo sapiens chromosome 1 clone RP11-332J14, complete sequence Length = 167346 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ccgacggtgaacgagcggga 87 |||||||||||||||||||| Sbjct: 70129 ccgacggtgaacgagcggga 70148
>ref|NM_018650.2| Homo sapiens MAP/microtubule affinity-regulating kinase 1 (MARK1), mRNA Length = 4638 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ccgacggtgaacgagcggga 87 |||||||||||||||||||| Sbjct: 619 ccgacggtgaacgagcggga 638
>dbj|AK098103.1| Homo sapiens cDNA FLJ40784 fis, clone TRACH2006331, moderately similar to Homo sapiens MARK (MARK) mRNA Length = 2311 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ccgacggtgaacgagcggga 87 |||||||||||||||||||| Sbjct: 252 ccgacggtgaacgagcggga 271
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 cgctgcattggcagctttgt 524 |||||||||||||||||||| Sbjct: 432637 cgctgcattggcagctttgt 432618
>gb|U43088.1|MMU43088 Mus Musculus IL-17 (CTLA-8) mRNA, complete cds Length = 1115 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gttgaccttcacattctgga 471 |||||||||||||||||||| Sbjct: 194 gttgaccttcacattctgga 175
>dbj|AK040420.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430092O03 product:interleukin 17, full insert sequence Length = 1172 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gttgaccttcacattctgga 471 |||||||||||||||||||| Sbjct: 208 gttgaccttcacattctgga 189
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aaccctagctcccgccgccg 34 |||||||||||||||||||| Sbjct: 2371077 aaccctagctcccgccgccg 2371058
>gb|AF154845.1|AF154845 Homo sapiens MARK (MARK) mRNA, complete cds Length = 2965 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ccgacggtgaacgagcggga 87 |||||||||||||||||||| Sbjct: 288 ccgacggtgaacgagcggga 307
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caagctcaaaatcgcattcg 170 |||||||||||||||||||| Sbjct: 1971035 caagctcaaaatcgcattcg 1971016
>dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0036F10 Length = 149415 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aaccctagctcccgccgccg 34 |||||||||||||||||||| Sbjct: 2535 aaccctagctcccgccgccg 2516
>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20 Length = 147363 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aaccctagctcccgccgccg 34 |||||||||||||||||||| Sbjct: 92878 aaccctagctcccgccgccg 92859
>dbj|AK103630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133P12, full insert sequence Length = 2407 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aaccctagctcccgccgccg 34 |||||||||||||||||||| Sbjct: 8 aaccctagctcccgccgccg 27
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 gcgtcgacggccgccgcccc 139 |||||||||||||||||||| Sbjct: 3193951 gcgtcgacggccgccgcccc 3193970
>gb|U35108.1|MMU35108 Mus musculus CTLA8 gene, complete cds Length = 2946 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gttgaccttcacattctgga 471 |||||||||||||||||||| Sbjct: 673 gttgaccttcacattctgga 654
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 gccgccccttcgacttccgcaagc 155 ||||| |||||||||||||||||| Sbjct: 1855209 gccgctccttcgacttccgcaagc 1855232
>dbj|AB040910.1| Homo sapiens mRNA for KIAA1477 protein, partial cds Length = 4638 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ccgacggtgaacgagcggga 87 |||||||||||||||||||| Sbjct: 619 ccgacggtgaacgagcggga 638 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,836,769 Number of Sequences: 3902068 Number of extensions: 3836769 Number of successful extensions: 78731 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78309 Number of HSP's gapped (non-prelim): 417 length of query: 584 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 561 effective length of database: 17,143,297,704 effective search space: 9617390011944 effective search space used: 9617390011944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
