ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart41f04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.112 mRNA Length = 1006 Score = 50.1 bits (25), Expect = 0.008 Identities = 54/63 (85%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 260 ccacatcccgtggtgccggagacgccaaaggagcctgaagtgccacaccccgtggtgccg 319 ||||| ||||| ||||||||| ||||||| ||||| ||||||||||| ||||||||| Sbjct: 555 ccacaccccgtcgtgccggagttgccaaag---cctgaggtgccacaccctgtggtgccg 611 Query: 320 gag 322 ||| Sbjct: 612 gag 614 Score = 46.1 bits (23), Expect = 0.12 Identities = 61/73 (83%), Gaps = 3/73 (4%) Strand = Plus / Plus Query: 449 ccacaccccattgtgccggagacgccaaaggagcctgaagtgccacaccccatggtgccg 508 ||||||||| | ||||||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 555 ccacaccccgtcgtgccggagttgccaaag---cctgaggtgccacaccctgtggtgccg 611 Query: 509 gaggtgccaaagc 521 ||| |||| |||| Sbjct: 612 gagttgccgaagc 624 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 503 gtgccggaggtgccaaagcatgagctgccgccgcaccc 540 ||||||||| | || |||| |||||||||||||||||| Sbjct: 183 gtgccggagcttcccaagcctgagctgccgccgcaccc 220 Score = 42.1 bits (21), Expect = 1.9 Identities = 53/63 (84%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 302 ccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgccg 361 ||||||||||| ||||||||| ||||| ||||||| ||| ||||||| || |||||| Sbjct: 555 ccacaccccgtcgtgccggagttgccaa---agcctgaggtgccacaccctgtggtgccg 611 Query: 362 gag 364 ||| Sbjct: 612 gag 614 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ccggagctgccaaagcccga 189 |||||||||||||||||||| Sbjct: 366 ccggagctgccaaagcccga 385 Score = 40.1 bits (20), Expect = 7.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 200 caccctgccatgcccgagctgccgaagcctgaactaccgc 239 ||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 267 caccccgccgtgccggagcttccgaagcctgaactgccgc 306
>ref|XM_479031.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1005 Score = 50.1 bits (25), Expect = 0.008 Identities = 54/63 (85%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 260 ccacatcccgtggtgccggagacgccaaaggagcctgaagtgccacaccccgtggtgccg 319 ||||| ||||| ||||||||| ||||||| ||||| ||||||||||| ||||||||| Sbjct: 552 ccacaccccgtcgtgccggagttgccaaag---cctgaggtgccacaccctgtggtgccg 608 Query: 320 gag 322 ||| Sbjct: 609 gag 611 Score = 46.1 bits (23), Expect = 0.12 Identities = 61/73 (83%), Gaps = 3/73 (4%) Strand = Plus / Plus Query: 449 ccacaccccattgtgccggagacgccaaaggagcctgaagtgccacaccccatggtgccg 508 ||||||||| | ||||||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 552 ccacaccccgtcgtgccggagttgccaaag---cctgaggtgccacaccctgtggtgccg 608 Query: 509 gaggtgccaaagc 521 ||| |||| |||| Sbjct: 609 gagttgccgaagc 621 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 503 gtgccggaggtgccaaagcatgagctgccgccgcaccc 540 ||||||||| | || |||| |||||||||||||||||| Sbjct: 180 gtgccggagcttcccaagcctgagctgccgccgcaccc 217 Score = 42.1 bits (21), Expect = 1.9 Identities = 53/63 (84%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 302 ccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgccg 361 ||||||||||| ||||||||| ||||| ||||||| ||| ||||||| || |||||| Sbjct: 552 ccacaccccgtcgtgccggagttgccaa---agcctgaggtgccacaccctgtggtgccg 608 Query: 362 gag 364 ||| Sbjct: 609 gag 611 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ccggagctgccaaagcccga 189 |||||||||||||||||||| Sbjct: 363 ccggagctgccaaagcccga 382 Score = 40.1 bits (20), Expect = 7.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 200 caccctgccatgcccgagctgccgaagcctgaactaccgc 239 ||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 264 caccccgccgtgccggagcttccgaagcctgaactgccgc 303
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.008 Identities = 54/63 (85%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 260 ccacatcccgtggtgccggagacgccaaaggagcctgaagtgccacaccccgtggtgccg 319 ||||| ||||| ||||||||| ||||||| ||||| ||||||||||| ||||||||| Sbjct: 24416981 ccacaccccgtcgtgccggagttgccaaag---cctgaggtgccacaccctgtggtgccg 24416925 Query: 320 gag 322 ||| Sbjct: 24416924 gag 24416922 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 287 aaggagcctgaagtgccacaccccgtggtgccgga 321 |||| ||||||| |||||||||||| ||||||||| Sbjct: 24428069 aaggtgcctgaactgccacaccccgaggtgccgga 24428035 Score = 46.1 bits (23), Expect = 0.12 Identities = 76/93 (81%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 301 gccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgcc 360 |||||||||||| ||||||||| ||||| |||| || ||| ||||| ||| ||||| Sbjct: 24419445 gccacaccccgtcgtgccggagctgccaa---agccggaggtgccacacgccgccgtgcc 24419389 Query: 361 ggaggtaccaaagcatgagctgccgccacaccc 393 |||| | || || | |||||||||||||||||| Sbjct: 24419388 ggagttgcccaaacctgagctgccgccacaccc 24419356 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Minus Query: 194 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 232 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 24419282 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 24419244 Score = 46.1 bits (23), Expect = 0.12 Identities = 61/73 (83%), Gaps = 3/73 (4%) Strand = Plus / Minus Query: 449 ccacaccccattgtgccggagacgccaaaggagcctgaagtgccacaccccatggtgccg 508 ||||||||| | ||||||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 24416981 ccacaccccgtcgtgccggagttgccaaag---cctgaggtgccacaccctgtggtgccg 24416925 Query: 509 gaggtgccaaagc 521 ||| |||| |||| Sbjct: 24416924 gagttgccgaagc 24416912 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Minus Query: 503 gtgccggaggtgccaaagcatgagctgccgccgcaccc 540 ||||||||| |||| ||||||||| |||||||||||| Sbjct: 24419780 gtgccggagctgcccaagcatgaggagccgccgcaccc 24419743 Score = 44.1 bits (22), Expect = 0.48 Identities = 49/58 (84%) Strand = Plus / Minus Query: 170 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 227 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 24419348 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 24419291 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Minus Query: 503 gtgccggaggtgccaaagcatgagctgccgccgcaccc 540 ||||||||| | || |||| |||||||||||||||||| Sbjct: 24417353 gtgccggagcttcccaagcctgagctgccgccgcaccc 24417316 Score = 42.1 bits (21), Expect = 1.9 Identities = 53/63 (84%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 302 ccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgccg 361 ||||||||||| ||||||||| ||||| ||||||| ||| ||||||| || |||||| Sbjct: 24416981 ccacaccccgtcgtgccggagttgccaa---agcctgaggtgccacaccctgtggtgccg 24416925 Query: 362 gag 364 ||| Sbjct: 24416924 gag 24416922 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 83 ctgctctcatgcagctccatgagcagtgcagc 114 ||||||||||| |||||||| ||||| ||||| Sbjct: 24428237 ctgctctcatggagctccatcagcagcgcagc 24428206 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ccggagctgccaaagcccga 189 |||||||||||||||||||| Sbjct: 24428123 ccggagctgccaaagcccga 24428104 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 389 caccctgctatgcccgagctcccgaagcctga 420 |||||||| |||| ||||||||||||||||| Sbjct: 24428009 caccctgcggtgccggagctcccgaagcctga 24427978 Score = 40.1 bits (20), Expect = 7.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 200 caccctgccatgcccgagctgccgaagcctgaactaccgc 239 ||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 24417269 caccccgccgtgccggagcttccgaagcctgaactgccgc 24417230 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ccggagctgccaaagcccga 189 |||||||||||||||||||| Sbjct: 24417170 ccggagctgccaaagcccga 24417151 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 513 tgccaaagcatgagctgccgccgcaccc 540 |||| |||| |||||||||||||||||| Sbjct: 24413475 tgcccaagcctgagctgccgccgcaccc 24413448
>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_B10 Length = 100294 Score = 50.1 bits (25), Expect = 0.008 Identities = 54/63 (85%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 260 ccacatcccgtggtgccggagacgccaaaggagcctgaagtgccacaccccgtggtgccg 319 ||||| ||||| ||||||||| ||||||| ||||| ||||||||||| ||||||||| Sbjct: 42848 ccacaccccgtcgtgccggagttgccaaag---cctgaggtgccacaccctgtggtgccg 42792 Query: 320 gag 322 ||| Sbjct: 42791 gag 42789 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 287 aaggagcctgaagtgccacaccccgtggtgccgga 321 |||| ||||||| |||||||||||| ||||||||| Sbjct: 53936 aaggtgcctgaactgccacaccccgaggtgccgga 53902 Score = 46.1 bits (23), Expect = 0.12 Identities = 76/93 (81%), Gaps = 3/93 (3%) Strand = Plus / Minus Query: 301 gccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgcc 360 |||||||||||| ||||||||| ||||| |||| || ||| ||||| ||| ||||| Sbjct: 45312 gccacaccccgtcgtgccggagctgccaa---agccggaggtgccacacgccgccgtgcc 45256 Query: 361 ggaggtaccaaagcatgagctgccgccacaccc 393 |||| | || || | |||||||||||||||||| Sbjct: 45255 ggagttgcccaaacctgagctgccgccacaccc 45223 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Minus Query: 194 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 232 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 45149 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 45111 Score = 46.1 bits (23), Expect = 0.12 Identities = 61/73 (83%), Gaps = 3/73 (4%) Strand = Plus / Minus Query: 449 ccacaccccattgtgccggagacgccaaaggagcctgaagtgccacaccccatggtgccg 508 ||||||||| | ||||||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 42848 ccacaccccgtcgtgccggagttgccaaag---cctgaggtgccacaccctgtggtgccg 42792 Query: 509 gaggtgccaaagc 521 ||| |||| |||| Sbjct: 42791 gagttgccgaagc 42779 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Minus Query: 503 gtgccggaggtgccaaagcatgagctgccgccgcaccc 540 ||||||||| |||| ||||||||| |||||||||||| Sbjct: 45647 gtgccggagctgcccaagcatgaggagccgccgcaccc 45610 Score = 44.1 bits (22), Expect = 0.48 Identities = 49/58 (84%) Strand = Plus / Minus Query: 170 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 227 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 45215 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 45158 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Minus Query: 503 gtgccggaggtgccaaagcatgagctgccgccgcaccc 540 ||||||||| | || |||| |||||||||||||||||| Sbjct: 43220 gtgccggagcttcccaagcctgagctgccgccgcaccc 43183 Score = 42.1 bits (21), Expect = 1.9 Identities = 53/63 (84%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 302 ccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgccg 361 ||||||||||| ||||||||| ||||| ||||||| ||| ||||||| || |||||| Sbjct: 42848 ccacaccccgtcgtgccggagttgccaa---agcctgaggtgccacaccctgtggtgccg 42792 Query: 362 gag 364 ||| Sbjct: 42791 gag 42789 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 83 ctgctctcatgcagctccatgagcagtgcagc 114 ||||||||||| |||||||| ||||| ||||| Sbjct: 54104 ctgctctcatggagctccatcagcagcgcagc 54073 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ccggagctgccaaagcccga 189 |||||||||||||||||||| Sbjct: 53990 ccggagctgccaaagcccga 53971 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 389 caccctgctatgcccgagctcccgaagcctga 420 |||||||| |||| ||||||||||||||||| Sbjct: 53876 caccctgcggtgccggagctcccgaagcctga 53845 Score = 40.1 bits (20), Expect = 7.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 200 caccctgccatgcccgagctgccgaagcctgaactaccgc 239 ||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 43136 caccccgccgtgccggagcttccgaagcctgaactgccgc 43097 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ccggagctgccaaagcccga 189 |||||||||||||||||||| Sbjct: 43037 ccggagctgccaaagcccga 43018 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 513 tgccaaagcatgagctgccgccgcaccc 540 |||| |||| |||||||||||||||||| Sbjct: 39342 tgcccaagcctgagctgccgccgcaccc 39315
>dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B01, full insert sequence Length = 1005 Score = 50.1 bits (25), Expect = 0.008 Identities = 54/63 (85%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 260 ccacatcccgtggtgccggagacgccaaaggagcctgaagtgccacaccccgtggtgccg 319 ||||| ||||| ||||||||| ||||||| ||||| ||||||||||| ||||||||| Sbjct: 552 ccacaccccgtcgtgccggagttgccaaag---cctgaggtgccacaccctgtggtgccg 608 Query: 320 gag 322 ||| Sbjct: 609 gag 611 Score = 46.1 bits (23), Expect = 0.12 Identities = 61/73 (83%), Gaps = 3/73 (4%) Strand = Plus / Plus Query: 449 ccacaccccattgtgccggagacgccaaaggagcctgaagtgccacaccccatggtgccg 508 ||||||||| | ||||||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 552 ccacaccccgtcgtgccggagttgccaaag---cctgaggtgccacaccctgtggtgccg 608 Query: 509 gaggtgccaaagc 521 ||| |||| |||| Sbjct: 609 gagttgccgaagc 621 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 503 gtgccggaggtgccaaagcatgagctgccgccgcaccc 540 ||||||||| | || |||| |||||||||||||||||| Sbjct: 180 gtgccggagcttcccaagcctgagctgccgccgcaccc 217 Score = 42.1 bits (21), Expect = 1.9 Identities = 53/63 (84%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 302 ccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgccg 361 ||||||||||| ||||||||| ||||| ||||||| ||| ||||||| || |||||| Sbjct: 552 ccacaccccgtcgtgccggagttgccaa---agcctgaggtgccacaccctgtggtgccg 608 Query: 362 gag 364 ||| Sbjct: 609 gag 611 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ccggagctgccaaagcccga 189 |||||||||||||||||||| Sbjct: 363 ccggagctgccaaagcccga 382 Score = 40.1 bits (20), Expect = 7.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 200 caccctgccatgcccgagctgccgaagcctgaactaccgc 239 ||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 264 caccccgccgtgccggagcttccgaagcctgaactgccgc 303
>dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162L16, full insert sequence Length = 1006 Score = 50.1 bits (25), Expect = 0.008 Identities = 54/63 (85%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 260 ccacatcccgtggtgccggagacgccaaaggagcctgaagtgccacaccccgtggtgccg 319 ||||| ||||| ||||||||| ||||||| ||||| ||||||||||| ||||||||| Sbjct: 555 ccacaccccgtcgtgccggagttgccaaag---cctgaggtgccacaccctgtggtgccg 611 Query: 320 gag 322 ||| Sbjct: 612 gag 614 Score = 46.1 bits (23), Expect = 0.12 Identities = 61/73 (83%), Gaps = 3/73 (4%) Strand = Plus / Plus Query: 449 ccacaccccattgtgccggagacgccaaaggagcctgaagtgccacaccccatggtgccg 508 ||||||||| | ||||||||| ||||||| ||||| ||||||||||| |||||||| Sbjct: 555 ccacaccccgtcgtgccggagttgccaaag---cctgaggtgccacaccctgtggtgccg 611 Query: 509 gaggtgccaaagc 521 ||| |||| |||| Sbjct: 612 gagttgccgaagc 624 Score = 42.1 bits (21), Expect = 1.9 Identities = 53/63 (84%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 302 ccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgccg 361 ||||||||||| ||||||||| ||||| ||||||| ||| ||||||| || |||||| Sbjct: 555 ccacaccccgtcgtgccggagttgccaa---agcctgaggtgccacaccctgtggtgccg 611 Query: 362 gag 364 ||| Sbjct: 612 gag 614 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 504 tgccggaggtgccaaagcatgagctgccgccgcaccc 540 |||||||| | || |||| |||||||||||||||||| Sbjct: 184 tgccggagcttcccaagcctgagctgccgccgcaccc 220 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ccggagctgccaaagcccga 189 |||||||||||||||||||| Sbjct: 366 ccggagctgccaaagcccga 385 Score = 40.1 bits (20), Expect = 7.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 200 caccctgccatgcccgagctgccgaagcctgaactaccgc 239 ||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 267 caccccgccgtgccggagcttccgaagcctgaactgccgc 306
>ref|XM_479036.1| Oryza sativa (japonica cultivar-group), mRNA Length = 678 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 287 aaggagcctgaagtgccacaccccgtggtgccgga 321 |||| ||||||| |||||||||||| ||||||||| Sbjct: 289 aaggtgcctgaactgccacaccccgaggtgccgga 323 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 389 caccctgctatgcccgagctcccgaagcctga 420 |||||||| |||| ||||||||||||||||| Sbjct: 349 caccctgcggtgccggagctcccgaagcctga 380 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ccggagctgccaaagcccga 189 |||||||||||||||||||| Sbjct: 235 ccggagctgccaaagcccga 254 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 83 ctgctctcatgcagctccatgagcagtgcagc 114 ||||||||||| |||||||| ||||| ||||| Sbjct: 121 ctgctctcatggagctccatcagcagcgcagc 152
>ref|XM_479032.1| Oryza sativa (japonica cultivar-group), mRNA Length = 994 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 194 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 232 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 719 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 757 Score = 46.1 bits (23), Expect = 0.12 Identities = 76/93 (81%), Gaps = 3/93 (3%) Strand = Plus / Plus Query: 301 gccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgcc 360 |||||||||||| ||||||||| ||||| |||| || ||| ||||| ||| ||||| Sbjct: 556 gccacaccccgtcgtgccggagctgccaa---agccggaggtgccacacgccgccgtgcc 612 Query: 361 ggaggtaccaaagcatgagctgccgccacaccc 393 |||| | || || | |||||||||||||||||| Sbjct: 613 ggagttgcccaaacctgagctgccgccacaccc 645 Score = 44.1 bits (22), Expect = 0.48 Identities = 49/58 (84%) Strand = Plus / Plus Query: 170 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 227 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 653 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 710 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 503 gtgccggaggtgccaaagcatgagctgccgccgcaccc 540 ||||||||| |||| ||||||||| |||||||||||| Sbjct: 221 gtgccggagctgcccaagcatgaggagccgccgcaccc 258
>ref|XM_507388.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.113 mRNA Length = 1071 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 194 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 232 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 718 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 756 Score = 46.1 bits (23), Expect = 0.12 Identities = 76/93 (81%), Gaps = 3/93 (3%) Strand = Plus / Plus Query: 301 gccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgcc 360 |||||||||||| ||||||||| ||||| |||| || ||| ||||| ||| ||||| Sbjct: 555 gccacaccccgtcgtgccggagctgccaa---agccggaggtgccacacgccgccgtgcc 611 Query: 361 ggaggtaccaaagcatgagctgccgccacaccc 393 |||| | || || | |||||||||||||||||| Sbjct: 612 ggagttgcccaaacctgagctgccgccacaccc 644 Score = 44.1 bits (22), Expect = 0.48 Identities = 49/58 (84%) Strand = Plus / Plus Query: 170 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 227 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 503 gtgccggaggtgccaaagcatgagctgccgccgcaccc 540 ||||||||| |||| ||||||||| |||||||||||| Sbjct: 220 gtgccggagctgcccaagcatgaggagccgccgcaccc 257
>ref|XM_506448.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.113 mRNA Length = 1071 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 194 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 232 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 718 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 756 Score = 46.1 bits (23), Expect = 0.12 Identities = 76/93 (81%), Gaps = 3/93 (3%) Strand = Plus / Plus Query: 301 gccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgcc 360 |||||||||||| ||||||||| ||||| |||| || ||| ||||| ||| ||||| Sbjct: 555 gccacaccccgtcgtgccggagctgccaa---agccggaggtgccacacgccgccgtgcc 611 Query: 361 ggaggtaccaaagcatgagctgccgccacaccc 393 |||| | || || | |||||||||||||||||| Sbjct: 612 ggagttgcccaaacctgagctgccgccacaccc 644 Score = 44.1 bits (22), Expect = 0.48 Identities = 49/58 (84%) Strand = Plus / Plus Query: 170 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 227 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 503 gtgccggaggtgccaaagcatgagctgccgccgcaccc 540 ||||||||| |||| ||||||||| |||||||||||| Sbjct: 220 gtgccggagctgcccaagcatgaggagccgccgcaccc 257
>dbj|AK106214.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G11, full insert sequence Length = 1071 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 194 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 232 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 718 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 756 Score = 46.1 bits (23), Expect = 0.12 Identities = 76/93 (81%), Gaps = 3/93 (3%) Strand = Plus / Plus Query: 301 gccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgcc 360 |||||||||||| ||||||||| ||||| |||| || ||| ||||| ||| ||||| Sbjct: 555 gccacaccccgtcgtgccggagctgccaa---agccggaggtgccacacgccgccgtgcc 611 Query: 361 ggaggtaccaaagcatgagctgccgccacaccc 393 |||| | || || | |||||||||||||||||| Sbjct: 612 ggagttgcccaaacctgagctgccgccacaccc 644 Score = 44.1 bits (22), Expect = 0.48 Identities = 49/58 (84%) Strand = Plus / Plus Query: 170 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 227 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 503 gtgccggaggtgccaaagcatgagctgccgccgcaccc 540 ||||||||| |||| ||||||||| |||||||||||| Sbjct: 220 gtgccggagctgcccaagcatgaggagccgccgcaccc 257
>dbj|AK105918.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H12, full insert sequence Length = 1071 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 194 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 232 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 718 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 756 Score = 46.1 bits (23), Expect = 0.12 Identities = 76/93 (81%), Gaps = 3/93 (3%) Strand = Plus / Plus Query: 301 gccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgcc 360 |||||||||||| ||||||||| ||||| |||| || ||| ||||| ||| ||||| Sbjct: 555 gccacaccccgtcgtgccggagctgccaa---agccggaggtgccacacgccgccgtgcc 611 Query: 361 ggaggtaccaaagcatgagctgccgccacaccc 393 |||| | || || | |||||||||||||||||| Sbjct: 612 ggagttgcccaaacctgagctgccgccacaccc 644 Score = 44.1 bits (22), Expect = 0.48 Identities = 49/58 (84%) Strand = Plus / Plus Query: 170 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 227 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 503 gtgccggaggtgccaaagcatgagctgccgccgcaccc 540 ||||||||| |||| ||||||||| |||||||||||| Sbjct: 220 gtgccggagctgcccaagcatgaggagccgccgcaccc 257
>dbj|AK070771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069L14, full insert sequence Length = 988 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 194 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 232 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 713 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 751 Score = 46.1 bits (23), Expect = 0.12 Identities = 76/93 (81%), Gaps = 3/93 (3%) Strand = Plus / Plus Query: 301 gccacaccccgtggtgccggagacgccaaaggagcctgaagtgtcacaccccgttgtgcc 360 |||||||||||| ||||||||| ||||| |||| || ||| ||||| ||| ||||| Sbjct: 551 gccacaccccgtcgtgccggagctgccaa---agccggaggtgccacacgccgccgtgcc 607 Query: 361 ggaggtaccaaagcatgagctgccgccacaccc 393 |||| | || || | |||||||||||||||||| Sbjct: 608 ggagttgcccaaacctgagctgccgccacaccc 640 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 503 gtgccggaggtgccaaagcatgagctgccgccgcaccc 540 ||||||||| |||| ||||||||| |||||||||||| Sbjct: 221 gtgccggagctgcccaagcatgaggagccgccgcaccc 258
>dbj|AK062673.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G06, full insert sequence Length = 678 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 287 aaggagcctgaagtgccacaccccgtggtgccgga 321 |||| ||||||| |||||||||||| ||||||||| Sbjct: 289 aaggtgcctgaactgccacaccccgaggtgccgga 323 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 389 caccctgctatgcccgagctcccgaagcctga 420 |||||||| |||| ||||||||||||||||| Sbjct: 349 caccctgcggtgccggagctcccgaagcctga 380 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ccggagctgccaaagcccga 189 |||||||||||||||||||| Sbjct: 235 ccggagctgccaaagcccga 254 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 83 ctgctctcatgcagctccatgagcagtgcagc 114 ||||||||||| |||||||| ||||| ||||| Sbjct: 121 ctgctctcatggagctccatcagcagcgcagc 152
>gb|AY112347.1| Zea mays CL32321_1 mRNA sequence Length = 636 Score = 46.1 bits (23), Expect = 0.12 Identities = 55/65 (84%), Gaps = 3/65 (4%) Strand = Plus / Minus Query: 170 ccggagctgccaaagcccgaaatcccgccgcaccctgc---catgcccgagctgccgaag 226 ||||||||||| |||||||| | | ||||||||| || | ||||||||||||||||| Sbjct: 596 ccggagctgcccaagcccgagctgcagccgcacccggcggccgtgcccgagctgccgaag 537 Query: 227 cctga 231 ||||| Sbjct: 536 cctga 532 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 506 ccggaggtgccaaagcatgagctgccgcc 534 |||||||||||||| || ||||||||||| Sbjct: 287 ccggaggtgccaaaccacgagctgccgcc 259
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 161 ccgatcatcccggagctgccaaagc 185 |||||||||||||||||||| |||| Sbjct: 98966 ccgatcatcccggagctgccgaagc 98942
>ref|XM_479030.1| Oryza sativa (japonica cultivar-group), mRNA Length = 680 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 513 tgccaaagcatgagctgccgccgcaccc 540 |||| |||| |||||||||||||||||| Sbjct: 331 tgcccaagcctgagctgccgccgcaccc 358
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ggttgtgccgaagaaggagt 149 |||||||||||||||||||| Sbjct: 2419917 ggttgtgccgaagaaggagt 2419898
>gb|AC026232.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-396K2, complete sequence Length = 74340 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 gtgccacaccccatggtgcc 507 |||||||||||||||||||| Sbjct: 44584 gtgccacaccccatggtgcc 44565
>dbj|AK107490.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D01, full insert sequence Length = 680 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 513 tgccaaagcatgagctgccgccgcaccc 540 |||| |||| |||||||||||||||||| Sbjct: 331 tgcccaagcctgagctgccgccgcaccc 358
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 catgcccgagctgccgaagc 227 |||||||||||||||||||| Sbjct: 1025909 catgcccgagctgccgaagc 1025928
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 gagcctgaagtgtcacaccc 351 |||||||||||||||||||| Sbjct: 235701 gagcctgaagtgtcacaccc 235682
>dbj|AP000344.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1269D1 Length = 186421 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 accccatggtgccggaggtg 514 |||||||||||||||||||| Sbjct: 37654 accccatggtgccggaggtg 37673 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,566,434 Number of Sequences: 3902068 Number of extensions: 3566434 Number of successful extensions: 72175 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71693 Number of HSP's gapped (non-prelim): 473 length of query: 557 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 534 effective length of database: 17,143,297,704 effective search space: 9154520973936 effective search space used: 9154520973936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
