>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4|
          Length = 489

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 382 PSLPAGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSR 489
           P++PA  R      S  RSRS++P+ + + +PSRSR
Sbjct: 447 PNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSR 482

>VE2_HPV49 (P36795) Regulatory protein E2|
          Length = 488

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 385 SLPAGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSRFMARRKQRRR 519
           S P     S   +S RRSRSRT T  +  + SRS+  +R + R R
Sbjct: 266 SSPTAASNSRKEVSRRRSRSRTRTRRREASTSRSQKASRSRSRSR 310

>RECQ4_HUMAN (O94761) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ|
           protein-like 4) (RecQ4) (RTS)
          Length = 1208

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 385 SLPAGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSR 489
           SLPA   ++P    W    +R  T +  PTP RSR
Sbjct: 64  SLPAAAEEAPEPRCWGPHLNRAATKSPQPTPGRSR 98

>YL116_MIMIV (Q5UPJ3) Hypothetical protein L116|
          Length = 563

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 373 SCPPSLPAGKRKSPGMLSWR---RSRSRTPTHAQTPTPSRSRFMARRKQRRR 519
           SC  S    + +SP    +R   RSR R+P  ++  +P RSR+ +  + R R
Sbjct: 127 SCELSSERSRYRSPERSRYRSPERSRYRSPERSRYRSPERSRYRSPERSRYR 178

>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 394 AGKRKSPGMLSWRRSRSRTPTHAQTPTPSRSRFMARRKQR 513
           + + +S   LS  RSRS T + + +P+PS+SR  +R + +
Sbjct: 476 SSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQ 515

>CY24A_MOUSE (Q61462) Cytochrome b-245 light chain (p22 phagocyte B-cytochrome)|
           (Neutrophil cytochrome b 22 kDa polypeptide) (p22-phox)
           (p22phox) (Cytochrome b(558) alpha chain) (Cytochrome
           b558 alpha subunit) (Superoxide-generating NADPH oxidase
           light ch
          Length = 191

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 447 DPDARPDTDAEQKPFHGEEEAAKA 518
           +P  RP  +  +KP  GEEEAA A
Sbjct: 153 NPPPRPPAEVRKKPSEGEEEAASA 176

>DNAE2_COREF (Q8FRX6) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1073

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +3

Query: 306 GISHHRGAFSGPGEVRDHPAFDVVPTELAR 395
           G   H G  SG   + D P  DVVPTE AR
Sbjct: 525 GQPRHLGIHSGGMVICDRPIADVVPTEWAR 554

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 400 KRKSPGMLSWR-RSRSRTPTHAQTPTPSRSRFMARRKQRRR 519
           +++SP     R RSRSR+P+H++     RSR   R   RRR
Sbjct: 276 RQRSPTRSKSRSRSRSRSPSHSRPRRRHRSRSRRRPSPRRR 316

>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)|
          Length = 657

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 190 TSAAASD*SSWVRRTALGGPWSSEVVSRTR 101
           T+AA  + ++ VRRTA G   +S+VVS TR
Sbjct: 386 TAAALDELTATVRRTAAGARQASDVVSTTR 415


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,808,765
Number of Sequences: 219361
Number of extensions: 719462
Number of successful extensions: 3402
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3219
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)