ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart41d08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U88090.1|HVU88090 Hordeum vulgare nonspecific lipid transfer protein (ltp-BR1) mRNA, complete cds Length = 681 Score = 1148 bits (579), Expect = 0.0 Identities = 585/587 (99%) Strand = Plus / Plus Query: 8 gccatacttgcagaggccactagctcactacgtacgagtcgatcaatctgttgtttcagc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gccatacttgcagaggccactagctcactacgtacgagtcgatcaatctgttgtttcagc 60 Query: 68 gagacaccatgaagtacttggcccagctggtggtggcgctcctggccttctcggcagtgg 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gagacaccatgaagtacttggcccagctggtggtggcgctcctggccttctcggcagtgg 120 Query: 128 tgctgatggtggcgccggcgggcgcggaggcggcgacctgcaacgcgctgcagctgaccc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgctgatggtggcgccggcgggcgcggaggcggcgacctgcaacgcgctgcagctgaccc 180 Query: 188 cgtgcgcgggggccatcatggggaacgcggcgcccacggcgtcgtgctgcagcaagatga 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cgtgcgcgggggccatcatggggaacgcggcgcccacggcgtcgtgctgcagcaagatga 240 Query: 248 gggagcagcagccttgcatgtgccagtacgcgcgcgaccccaacctcaagcagtacgtcg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gggagcagcagccttgcatgtgccagtacgcgcgcgaccccaacctcaagcagtacgtcg 300 Query: 308 actcccctaacggcaagaaggtcatggccgcctgcaaggtgcccgtgccctcctgctaga 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 actcccctaacggcaagaaggtcatggccgcctgcaaggtgcccgtgccctcctgctaga 360 Query: 368 tggacgcatatatgatcgatccatacgacagagcgcagcgcgcacgcgggcctctctgtc 427 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 361 tggacgcatatatgatcgatccatacgggagagcgcagcgcgcacgcgggcctctctgtc 420 Query: 428 ctctcgctgcatgtttcatgtgtgttcatgtgtcagtgtttcccaacacaatctagctac 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ctctcgctgcatgtttcatgtgtgttcatgtgtcagtgtttcccaacacaatctagctac 480 Query: 488 cctgacgatgtatgtggagttgtggaccgatgtgtatctaaatttctgaatatacgcaat 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cctgacgatgtatgtggagttgtggaccgatgtgtatctaaatttctgaatatacgcaat 540 Query: 548 aatggtgatgtatccagctatatgtaatttatatgtttcttcctgtg 594 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 aatggtgatgtatccagctatatgtaatttatatgtttcttcctgtg 587
>ref|XM_475853.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 285 Score = 186 bits (94), Expect = 6e-44 Identities = 189/220 (85%), Gaps = 3/220 (1%) Strand = Plus / Plus Query: 146 cgggcgcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatca 205 |||| |||||||||||| ||| |||||||||||||| | ||||||||| | || |||| Sbjct: 68 cgggggcggaggcggcg---tgcgacgcgctgcagctgtcgccgtgcgcgagcgcgatca 124 Query: 206 tggggaacgcggcgcccacggcgtcgtgctgcagcaagatgagggagcagcagccttgca 265 | ||||||||| |||| ||||||||||||||||| ||||| |||||||||||| ||| Sbjct: 125 tcgggaacgcgtcgccgtcggcgtcgtgctgcagccggatgaaggagcagcagccgtgcc 184 Query: 266 tgtgccagtacgcgcgcgaccccaacctcaagcagtacgtcgactcccctaacggcaaga 325 |||||||||||||||||||||| ||||| ||| |||||| ||||||| |||||||||| Sbjct: 185 tgtgccagtacgcgcgcgacccaaacctgcagcgctacgtcaactcccccaacggcaaga 244 Query: 326 aggtcatggccgcctgcaaggtgcccgtgccctcctgcta 365 ||||| ||||||||||| | || ||||| ||||||||||| Sbjct: 245 aggtcttggccgcctgccacgtccccgtcccctcctgcta 284
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 186 bits (94), Expect = 6e-44 Identities = 189/220 (85%), Gaps = 3/220 (1%) Strand = Plus / Plus Query: 146 cgggcgcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatca 205 |||| |||||||||||| ||| |||||||||||||| | ||||||||| | || |||| Sbjct: 41954 cgggggcggaggcggcg---tgcgacgcgctgcagctgtcgccgtgcgcgagcgcgatca 42010 Query: 206 tggggaacgcggcgcccacggcgtcgtgctgcagcaagatgagggagcagcagccttgca 265 | ||||||||| |||| ||||||||||||||||| ||||| |||||||||||| ||| Sbjct: 42011 tcgggaacgcgtcgccgtcggcgtcgtgctgcagccggatgaaggagcagcagccgtgcc 42070 Query: 266 tgtgccagtacgcgcgcgaccccaacctcaagcagtacgtcgactcccctaacggcaaga 325 |||||||||||||||||||||| ||||| ||| |||||| ||||||| |||||||||| Sbjct: 42071 tgtgccagtacgcgcgcgacccaaacctgcagcgctacgtcaactcccccaacggcaaga 42130 Query: 326 aggtcatggccgcctgcaaggtgcccgtgccctcctgcta 365 ||||| ||||||||||| | || ||||| ||||||||||| Sbjct: 42131 aggtcttggccgcctgccacgtccccgtcccctcctgcta 42170 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 299 agtacgtcgactcccctaacggcaagaaggtcatggccgcctgcaaggtgcccgtgccc 357 |||||||| |||| || ||||||||||||||| | ||| |||||||||| ||| ||||| Sbjct: 57093 agtacgtcaactcgcccaacggcaagaaggtcttcgccacctgcaaggttcccctgccc 57151 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 151 gcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatcatgggg 210 |||||||||||||| |||| || ||||||||| ||||||||| ||| ||| ||||| Sbjct: 56942 gcggaggcggcgacgtgcacgccgacgcagctgacgccgtgcgcgccggcgatcgtgggg 57001 Query: 211 aacgcggcgcccacggcgtcgtgctgc 237 ||| || |||| |||||| |||||||| Sbjct: 57002 aactcgccgccgacggcggcgtgctgc 57028
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05, complete sequence Length = 141715 Score = 186 bits (94), Expect = 6e-44 Identities = 189/220 (85%), Gaps = 3/220 (1%) Strand = Plus / Plus Query: 146 cgggcgcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatca 205 |||| |||||||||||| ||| |||||||||||||| | ||||||||| | || |||| Sbjct: 117139 cgggggcggaggcggcg---tgcgacgcgctgcagctgtcgccgtgcgcgagcgcgatca 117195 Query: 206 tggggaacgcggcgcccacggcgtcgtgctgcagcaagatgagggagcagcagccttgca 265 | ||||||||| |||| ||||||||||||||||| ||||| |||||||||||| ||| Sbjct: 117196 tcgggaacgcgtcgccgtcggcgtcgtgctgcagccggatgaaggagcagcagccgtgcc 117255 Query: 266 tgtgccagtacgcgcgcgaccccaacctcaagcagtacgtcgactcccctaacggcaaga 325 |||||||||||||||||||||| ||||| ||| |||||| ||||||| |||||||||| Sbjct: 117256 tgtgccagtacgcgcgcgacccaaacctgcagcgctacgtcaactcccccaacggcaaga 117315 Query: 326 aggtcatggccgcctgcaaggtgcccgtgccctcctgcta 365 ||||| ||||||||||| | || ||||| ||||||||||| Sbjct: 117316 aggtcttggccgcctgccacgtccccgtcccctcctgcta 117355 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 299 agtacgtcgactcccctaacggcaagaaggtcatggccgcctgcaaggtgcccgtgccc 357 |||||||| |||| || ||||||||||||||| | ||| |||||||||| ||| ||||| Sbjct: 132278 agtacgtcaactcgcccaacggcaagaaggtcttcgccacctgcaaggttcccctgccc 132336 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 151 gcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatcatgggg 210 |||||||||||||| |||| || ||||||||| ||||||||| ||| ||| ||||| Sbjct: 132127 gcggaggcggcgacgtgcacgccgacgcagctgacgccgtgcgcgccggcgatcgtgggg 132186 Query: 211 aacgcggcgcccacggcgtcgtgctgc 237 ||| || |||| |||||| |||||||| Sbjct: 132187 aactcgccgccgacggcggcgtgctgc 132213
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 186 bits (94), Expect = 6e-44 Identities = 189/220 (85%), Gaps = 3/220 (1%) Strand = Plus / Plus Query: 146 cgggcgcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatca 205 |||| |||||||||||| ||| |||||||||||||| | ||||||||| | || |||| Sbjct: 141642 cgggggcggaggcggcg---tgcgacgcgctgcagctgtcgccgtgcgcgagcgcgatca 141698 Query: 206 tggggaacgcggcgcccacggcgtcgtgctgcagcaagatgagggagcagcagccttgca 265 | ||||||||| |||| ||||||||||||||||| ||||| |||||||||||| ||| Sbjct: 141699 tcgggaacgcgtcgccgtcggcgtcgtgctgcagccggatgaaggagcagcagccgtgcc 141758 Query: 266 tgtgccagtacgcgcgcgaccccaacctcaagcagtacgtcgactcccctaacggcaaga 325 |||||||||||||||||||||| ||||| ||| |||||| ||||||| |||||||||| Sbjct: 141759 tgtgccagtacgcgcgcgacccaaacctgcagcgctacgtcaactcccccaacggcaaga 141818 Query: 326 aggtcatggccgcctgcaaggtgcccgtgccctcctgcta 365 ||||| ||||||||||| | || ||||| ||||||||||| Sbjct: 141819 aggtcttggccgcctgccacgtccccgtcccctcctgcta 141858 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 299 agtacgtcgactcccctaacggcaagaaggtcatggccgcctgcaaggtgcccgtgccc 357 |||||||| |||| || ||||||||||||||| | ||| |||||||||| ||| ||||| Sbjct: 156781 agtacgtcaactcgcccaacggcaagaaggtcttcgccacctgcaaggttcccctgccc 156839 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 151 gcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatcatgggg 210 |||||||||||||| |||| || ||||||||| ||||||||| ||| ||| ||||| Sbjct: 156630 gcggaggcggcgacgtgcacgccgacgcagctgacgccgtgcgcgccggcgatcgtgggg 156689 Query: 211 aacgcggcgcccacggcgtcgtgctgc 237 ||| || |||| |||||| |||||||| Sbjct: 156690 aactcgccgccgacggcggcgtgctgc 156716
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 186 bits (94), Expect = 6e-44 Identities = 189/220 (85%), Gaps = 3/220 (1%) Strand = Plus / Plus Query: 146 cgggcgcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatca 205 |||| |||||||||||| ||| |||||||||||||| | ||||||||| | || |||| Sbjct: 27110558 cgggggcggaggcggcg---tgcgacgcgctgcagctgtcgccgtgcgcgagcgcgatca 27110614 Query: 206 tggggaacgcggcgcccacggcgtcgtgctgcagcaagatgagggagcagcagccttgca 265 | ||||||||| |||| ||||||||||||||||| ||||| |||||||||||| ||| Sbjct: 27110615 tcgggaacgcgtcgccgtcggcgtcgtgctgcagccggatgaaggagcagcagccgtgcc 27110674 Query: 266 tgtgccagtacgcgcgcgaccccaacctcaagcagtacgtcgactcccctaacggcaaga 325 |||||||||||||||||||||| ||||| ||| |||||| ||||||| |||||||||| Sbjct: 27110675 tgtgccagtacgcgcgcgacccaaacctgcagcgctacgtcaactcccccaacggcaaga 27110734 Query: 326 aggtcatggccgcctgcaaggtgcccgtgccctcctgcta 365 ||||| ||||||||||| | || ||||| ||||||||||| Sbjct: 27110735 aggtcttggccgcctgccacgtccccgtcccctcctgcta 27110774 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 299 agtacgtcgactcccctaacggcaagaaggtcatggccgcctgcaaggtgcccgtgccc 357 |||||||| |||| || ||||||||||||||| | ||| |||||||||| ||| ||||| Sbjct: 27125697 agtacgtcaactcgcccaacggcaagaaggtcttcgccacctgcaaggttcccctgccc 27125755 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 151 gcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatcatgggg 210 |||||||||||||| |||| || ||||||||| ||||||||| ||| ||| ||||| Sbjct: 27125546 gcggaggcggcgacgtgcacgccgacgcagctgacgccgtgcgcgccggcgatcgtgggg 27125605 Query: 211 aacgcggcgcccacggcgtcgtgctgc 237 ||| || |||| |||||| |||||||| Sbjct: 27125606 aactcgccgccgacggcggcgtgctgc 27125632
>dbj|AK062463.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D11, full insert sequence Length = 625 Score = 186 bits (94), Expect = 6e-44 Identities = 189/220 (85%), Gaps = 3/220 (1%) Strand = Plus / Plus Query: 146 cgggcgcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatca 205 |||| |||||||||||| ||| |||||||||||||| | ||||||||| | || |||| Sbjct: 166 cgggggcggaggcggcg---tgcgacgcgctgcagctgtcgccgtgcgcgagcgcgatca 222 Query: 206 tggggaacgcggcgcccacggcgtcgtgctgcagcaagatgagggagcagcagccttgca 265 | ||||||||| |||| ||||||||||||||||| ||||| |||||||||||| ||| Sbjct: 223 tcgggaacgcgtcgccgtcggcgtcgtgctgcagccggatgaaggagcagcagccgtgcc 282 Query: 266 tgtgccagtacgcgcgcgaccccaacctcaagcagtacgtcgactcccctaacggcaaga 325 |||||||||||||||||||||| ||||| ||| |||||| ||||||| |||||||||| Sbjct: 283 tgtgccagtacgcgcgcgacccaaacctgcagcgctacgtcaactcccccaacggcaaga 342 Query: 326 aggtcatggccgcctgcaaggtgcccgtgccctcctgcta 365 ||||| ||||||||||| | || ||||| ||||||||||| Sbjct: 343 aggtcttggccgcctgccacgtccccgtcccctcctgcta 382
>gb|AY105127.1| Zea mays PCO127262 mRNA sequence Length = 620 Score = 107 bits (54), Expect = 4e-20 Identities = 102/118 (86%) Strand = Plus / Plus Query: 249 ggagcagcagccttgcatgtgccagtacgcgcgcgaccccaacctcaagcagtacgtcga 308 |||||||||||| ||| ||||| |||||||||||||||||| || ||| |||||| | Sbjct: 229 ggagcagcagccgtgcctgtgcacgtacgcgcgcgaccccaatcttcagcgctacgtcaa 288 Query: 309 ctcccctaacggcaagaaggtcatggccgcctgcaaggtgcccgtgccctcctgctag 366 ||| || ||||||||||||| ||||||||| ||||||||||||||||| || |||||| Sbjct: 289 ctcgcccaacggcaagaaggccatggccgcgtgcaaggtgcccgtgccgtcgtgctag 346
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 252 gcagcagccttgcatgtgccagtacgcgcgcgaccc 287 ||||||||| ||| |||||||||||||||||||||| Sbjct: 29292197 gcagcagccgtgcctgtgccagtacgcgcgcgaccc 29292232
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 252 gcagcagccttgcatgtgccagtacgcgcgcgaccc 287 ||||||||| ||| |||||||||||||||||||||| Sbjct: 3078 gcagcagccgtgcctgtgccagtacgcgcgcgaccc 3113
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 252 gcagcagccttgcatgtgccagtacgcgcgcgaccc 287 ||||||||| ||| |||||||||||||||||||||| Sbjct: 54995 gcagcagccgtgcctgtgccagtacgcgcgcgaccc 55030
>dbj|AK062667.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F12, full insert sequence Length = 626 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 252 gcagcagccttgcatgtgccagtacgcgcgcgaccc 287 ||||||||| ||| |||||||||||||||||||||| Sbjct: 275 gcagcagccgtgcctgtgccagtacgcgcgcgaccc 310
>ref|XM_475855.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 291 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 299 agtacgtcgactcccctaacggcaagaaggtcatggccgcctgcaaggtgcccgtgccc 357 |||||||| |||| || ||||||||||||||| | ||| |||||||||| ||| ||||| Sbjct: 224 agtacgtcaactcgcccaacggcaagaaggtcttcgccacctgcaaggttcccctgccc 282 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 151 gcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatcatgggg 210 |||||||||||||| |||| || ||||||||| ||||||||| ||| ||| ||||| Sbjct: 73 gcggaggcggcgacgtgcacgccgacgcagctgacgccgtgcgcgccggcgatcgtgggg 132 Query: 211 aacgcggcgcccacggcgtcgtgctgc 237 ||| || |||| |||||| |||||||| Sbjct: 133 aactcgccgccgacggcggcgtgctgc 159
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 299 agtacgtcgactcccctaacggcaagaaggtcatggccgcctgcaaggtgcccgtgccc 357 |||||||| |||| || ||||||||||||||| | ||| |||||||||| ||| ||||| Sbjct: 665 agtacgtcaactcgcccaacggcaagaaggtcttcgccacctgcaaggttcccctgccc 723 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 151 gcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatcatgggg 210 |||||||||||||| |||| || ||||||||| ||||||||| ||| ||| ||||| Sbjct: 514 gcggaggcggcgacgtgcacgccgacgcagctgacgccgtgcgcgccggcgatcgtgggg 573 Query: 211 aacgcggcgcccacggcgtcgtgctgc 237 ||| || |||| |||||| |||||||| Sbjct: 574 aactcgccgccgacggcggcgtgctgc 600
>dbj|AK119689.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-B03, full insert sequence Length = 579 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 299 agtacgtcgactcccctaacggcaagaaggtcatggccgcctgcaaggtgcccgtgccc 357 |||||||| |||| || ||||||||||||||| | ||| |||||||||| ||| ||||| Sbjct: 307 agtacgtcaactcgcccaacggcaagaaggtcttcgccacctgcaaggttcccctgccc 365 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 151 gcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatcatgggg 210 |||||||||||||| |||| || ||||||||| ||||||||| ||| ||| ||||| Sbjct: 156 gcggaggcggcgacgtgcacgccgacgcagctgacgccgtgcgcgccggcgatcgtgggg 215 Query: 211 aacgcggcgcccacggcgtcgtgctgc 237 ||| || |||| |||||| |||||||| Sbjct: 216 aactcgccgccgacggcggcgtgctgc 242
>dbj|AK063729.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-E03, full insert sequence Length = 540 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 299 agtacgtcgactcccctaacggcaagaaggtcatggccgcctgcaaggtgcccgtgccc 357 |||||||| |||| || ||||||||||||||| | ||| |||||||||| ||| ||||| Sbjct: 317 agtacgtcaactcgcccaacggcaagaaggtcttcgccacctgcaaggttcccctgccc 375 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 151 gcggaggcggcgacctgcaacgcgctgcagctgaccccgtgcgcgggggccatcatgggg 210 |||||||||||||| |||| || ||||||||| ||||||||| ||| ||| ||||| Sbjct: 166 gcggaggcggcgacgtgcacgccgacgcagctgacgccgtgcgcgccggcgatcgtgggg 225 Query: 211 aacgcggcgcccacggcgtcgtgctgc 237 ||| || |||| |||||| |||||||| Sbjct: 226 aactcgccgccgacggcggcgtgctgc 252
>ref|NM_184889.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1062 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 140 cgccggcgggcgcggaggcggcga 163 |||||||||||||||||||||||| Sbjct: 218 cgccggcgggcgcggaggcggcga 241
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 140 cgccggcgggcgcggaggcggcga 163 |||||||||||||||||||||||| Sbjct: 31682996 cgccggcgggcgcggaggcggcga 31683019
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 140 cgccggcgggcgcggaggcggcga 163 |||||||||||||||||||||||| Sbjct: 8222 cgccggcgggcgcggaggcggcga 8245
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 140 cgccggcgggcgcggaggcggcga 163 |||||||||||||||||||||||| Sbjct: 31773512 cgccggcgggcgcggaggcggcga 31773535
>emb|AL670413.19| Mouse DNA sequence from clone RP23-298E4 on chromosome 4, complete sequence Length = 243792 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 437 catgtttcatgtgtgttcatgtgt 460 |||||||||||||||||||||||| Sbjct: 7060 catgtttcatgtgtgttcatgtgt 7083
>emb|AL662905.7| Human DNA sequence from clone RP13-358O4 on chromosome X, complete sequence Length = 99284 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 566 tatatgtaatttatatgtttctt 588 ||||||||||||||||||||||| Sbjct: 67339 tatatgtaatttatatgtttctt 67361
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Plus Query: 381 gatcgatccatacgacagagcgcagcgcgc 410 |||||||| ||||||| ||||||||||||| Sbjct: 203743 gatcgatcgatacgaccgagcgcagcgcgc 203772
>gb|BT016516.1| Zea mays clone Contig349 mRNA sequence Length = 818 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 316 aacggcaagaaggtcatggccg 337 |||||||||||||||||||||| Sbjct: 291 aacggcaagaaggtcatggccg 312
>ref|NG_004620.1| Rattus norvegicus tenascin X pseudogene (Tnx) on chromosome 20 Length = 44507 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 446 tgtgtgttcatgtgtcagtgtt 467 |||||||||||||||||||||| Sbjct: 19383 tgtgtgttcatgtgtcagtgtt 19362
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 318 cggcaagaaggtcatggccgcc 339 |||||||||||||||||||||| Sbjct: 1724288 cggcaagaaggtcatggccgcc 1724267
>gb|AE009245.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 15 of 187 of the complete sequence Length = 12796 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 318 cggcaagaaggtcatggccgcc 339 |||||||||||||||||||||| Sbjct: 5998 cggcaagaaggtcatggccgcc 5977
>gb|AE008368.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 172 of 187 of the complete sequence Length = 13928 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 318 cggcaagaaggtcatggccgcc 339 |||||||||||||||||||||| Sbjct: 7931 cggcaagaaggtcatggccgcc 7952
>emb|BX883044.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 3/11 Length = 340493 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 446 tgtgtgttcatgtgtcagtgtt 467 |||||||||||||||||||||| Sbjct: 303653 tgtgtgttcatgtgtcagtgtt 303632
>dbj|AK062493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-H09, full insert sequence Length = 437 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 266 tgtgccagtacgcgcgcgaccc 287 |||||||||||||||||||||| Sbjct: 157 tgtgccagtacgcgcgcgaccc 178
>gb|AC161050.2| Mus musculus BAC clone RP23-477C12 from chromosome 12, complete sequence Length = 197084 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 tgcagaggccactagctcact 36 ||||||||||||||||||||| Sbjct: 9213 tgcagaggccactagctcact 9193
>gb|AC150871.4| Bos taurus BAC CH240-316E7 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 167244 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 tgtgtgttcatgtgtcagtgt 466 ||||||||||||||||||||| Sbjct: 97344 tgtgtgttcatgtgtcagtgt 97364
>gb|AC102435.6| Mus musculus chromosome 12, clone RP24-123B22, complete sequence Length = 155483 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 tgcagaggccactagctcact 36 ||||||||||||||||||||| Sbjct: 15785 tgcagaggccactagctcact 15805
>gb|AC134870.4| Mus musculus BAC clone RP23-166E8 from chromosome 7, complete sequence Length = 165349 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 tgtgtgttcatgtgtcagtgt 466 ||||||||||||||||||||| Sbjct: 70782 tgtgtgttcatgtgtcagtgt 70802
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 118 tcggcagtggtgctgatggtggcgccggc 146 ||||| |||||| |||||||||||||||| Sbjct: 3530423 tcggcggtggtggtgatggtggcgccggc 3530451
>gb|AY330485.1| Saccharopolyspora erythraea amino acid permease gene, partial cds; transport protein, helix-turn-helix regulator (pkeRI), P450 monooxygenase (pkePI), P450 monooxygenase (pkePII), P450 monooxygenase (pkePIII), type I PKS (pkeAI), type I PKS (pkeAII), and type I PKS (pkeAIII) genes, complete cds; pkeAIV gene, complete sequence; type I PKS, monooxygenases, transporter, ketoacyl-ACP synthase (typeII), acyl carrier protien, amino transferase, and DNA-binding protein genes, complete cds; and unknown genes Length = 68451 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 cggcgggcgcggaggcggcga 163 ||||||||||||||||||||| Sbjct: 40334 cggcgggcgcggaggcggcga 40354
>gb|AC133000.5| Rattus Norvegicus Strain CH230-62B6 BAC, BN/SsNHsd/MCW, complete sequence Length = 245581 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 tgtgtgttcatgtgtcagtgt 466 ||||||||||||||||||||| Sbjct: 103333 tgtgtgttcatgtgtcagtgt 103353
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 ggcgctcctggccttctcggc 122 ||||||||||||||||||||| Sbjct: 15908 ggcgctcctggccttctcggc 15928
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 138 ggcgccggcgggcgcggaggcggcg 162 ||||| ||||||||||||||||||| Sbjct: 157390 ggcgcaggcgggcgcggaggcggcg 157414
>dbj|D90155.1|STMAFSR Streptomyces coelicolor A3(2) afsR gene, complete cds Length = 3570 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 ggcgctcctggccttctcggc 122 ||||||||||||||||||||| Sbjct: 658 ggcgctcctggccttctcggc 638
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 gtggtgctgatggtggcgccggcgg 148 |||| |||||||||||||||||||| Sbjct: 974756 gtggcgctgatggtggcgccggcgg 974780
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 118 tcggcagtggtgctgatggtggcgccggc 146 ||||| |||||| |||||||||||||||| Sbjct: 1298568 tcggcggtggtggtgatggtggcgccggc 1298540
>gb|AE005698.1| Caulobacter crescentus CB15 section 24 of 359 of the complete genome Length = 11036 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 ggcccagctggtggtggcgct 107 ||||||||||||||||||||| Sbjct: 10302 ggcccagctggtggtggcgct 10322
>gb|AF234171.2|AF234171 Mus musculus STAT5B (Stat5b) gene, complete cds Length = 71512 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 436 gcatgtttcatgtgtgttcat 456 ||||||||||||||||||||| Sbjct: 32539 gcatgtttcatgtgtgttcat 32559
>gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 195667 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 436 gcatgtttcatgtgtgttcat 456 ||||||||||||||||||||| Sbjct: 142676 gcatgtttcatgtgtgttcat 142696
>gb|AC136926.4| Rattus Norvegicus Strain CH230-163A18 BAC, BN/SsNHsd/MCW, complete sequence Length = 214942 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 tgtgtgttcatgtgtcagtgt 466 ||||||||||||||||||||| Sbjct: 194402 tgtgtgttcatgtgtcagtgt 194422
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 138 ggcgccggcgggcgcggaggcggcg 162 ||||| ||||||||||||||||||| Sbjct: 842296 ggcgcgggcgggcgcggaggcggcg 842320
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 118 tcggcagtggtgctgatggtggcgccggc 146 ||||| |||||| |||||||||||||||| Sbjct: 1322346 tcggcggtggtggtgatggtggcgccggc 1322318
>gb|AC172623.3| Mus musculus chromosome 8, clone RP23-478A9, complete sequence Length = 182316 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 tgtgttcatgtgtcagtgttt 468 ||||||||||||||||||||| Sbjct: 152649 tgtgttcatgtgtcagtgttt 152669
>gb|AC113182.14| Mus musculus chromosome 8, clone RP23-39F24, complete sequence Length = 217373 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 tgtgttcatgtgtcagtgttt 468 ||||||||||||||||||||| Sbjct: 50434 tgtgttcatgtgtcagtgttt 50454
>emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chromosome 11, complete sequence Length = 239847 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 436 gcatgtttcatgtgtgttcat 456 ||||||||||||||||||||| Sbjct: 176992 gcatgtttcatgtgtgttcat 177012
>dbj|D45382.2|STMAFSK1 Streptomyces coelicolor genes for KbpA, afsK, orfB and afsS, complete cds Length = 8199 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 ggcgctcctggccttctcggc 122 ||||||||||||||||||||| Sbjct: 7542 ggcgctcctggccttctcggc 7562
>ref|NM_001009072.1| Pan troglodytes sodium channel, nonvoltage-gated 1, delta (SCNN1D), mRNA Length = 1917 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 119 cggcagtggtgctgatggtggcgccggc 146 |||| ||||||||||||||||| ||||| Sbjct: 117 cggcggtggtgctgatggtggccccggc 90
>gb|BT016589.1| Zea mays clone Contig422 mRNA sequence Length = 899 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 aacggcaagaaggtcatggc 335 |||||||||||||||||||| Sbjct: 318 aacggcaagaaggtcatggc 337
>gb|BT016445.1| Zea mays clone Contig278 mRNA sequence Length = 1018 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 aacggcaagaaggtcatggc 335 |||||||||||||||||||| Sbjct: 333 aacggcaagaaggtcatggc 352
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 tacttggcccagctggtggt 101 |||||||||||||||||||| Sbjct: 2476568 tacttggcccagctggtggt 2476587
>ref|XM_596070.2| PREDICTED: Bos taurus similar to trefoil factor 3 precursor (LOC517889), mRNA Length = 821 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gctggtggtggcgctcctggcctt 116 ||||||||||||| |||||||||| Sbjct: 66 gctggtggtggcggtcctggcctt 89
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 574 atttatatgtttcttcctgt 593 |||||||||||||||||||| Sbjct: 1138205 atttatatgtttcttcctgt 1138186
>gb|AC095326.9| Rattus norvegicus 1 BAC CH230-89E14 (Children's Hospital Oakland Research Institute) complete sequence Length = 219914 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tttcatgtgtgttcatgtgt 460 |||||||||||||||||||| Sbjct: 32077 tttcatgtgtgttcatgtgt 32058
>ref|XM_747411.1| Aspergillus fumigatus Af293 cytochrome P450 (Afu1g11390) partial mRNA Length = 1656 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tggtgctgatggtggcgccg 144 |||||||||||||||||||| Sbjct: 526 tggtgctgatggtggcgccg 507
>gb|AC125526.4| Mus musculus BAC clone RP24-498L21 from chromosome 15, complete sequence Length = 178670 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 tttcatgtgtgttcatgtgt 460 |||||||||||||||||||| Sbjct: 38415 tttcatgtgtgttcatgtgt 38434
>gb|AE014310.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 7 of 11 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 gggcctctctgtcctctcgc 434 |||||||||||||||||||| Sbjct: 64158 gggcctctctgtcctctcgc 64139
>gb|AC146842.9| Medicago truncatula clone mth2-10a3, complete sequence Length = 63866 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 567 atatgtaatttatatgtttc 586 |||||||||||||||||||| Sbjct: 50754 atatgtaatttatatgtttc 50735
>gb|AC137836.25| Medicago truncatula clone mth2-10f14, complete sequence Length = 140197 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 567 atatgtaatttatatgtttc 586 |||||||||||||||||||| Sbjct: 76398 atatgtaatttatatgtttc 76417
>gb|AC139290.15| Medicago truncatula clone mth2-23f4, complete sequence Length = 127701 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 567 atatgtaatttatatgtttc 586 |||||||||||||||||||| Sbjct: 105232 atatgtaatttatatgtttc 105251
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tggcccagctggtggtggcg 105 |||||||||||||||||||| Sbjct: 2556028 tggcccagctggtggtggcg 2556009
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 gggaacgcggcgcccacggcgtcg 231 ||||||||||||| |||||||||| Sbjct: 2523660 gggaacgcggcgcgcacggcgtcg 2523637
>gb|AE014838.1| Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 tatatgtaatttatatgttt 585 |||||||||||||||||||| Sbjct: 123825 tatatgtaatttatatgttt 123806
>emb|AL355552.8| Human DNA sequence from clone RP11-217F17 on chromosome 13 Contains a ribosomal protein L7 (RPL7) pseudogene, complete sequence Length = 90157 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 gggcctctctgtcctctcgc 434 |||||||||||||||||||| Sbjct: 66819 gggcctctctgtcctctcgc 66800
>emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J21 on chromosome 1q23.3-24.3 Contains part of the TNR gene for tenascin R (restrictin, janusin), a novel gene and one CpG island, complete sequence Length = 138636 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 ctatatgtaatttatatgtt 584 |||||||||||||||||||| Sbjct: 61009 ctatatgtaatttatatgtt 60990
>gb|AE014241.1| Streptococcus agalactiae 2603V/R section 51 of 100 of the complete genome Length = 21827 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 574 atttatatgtttcttcctgt 593 |||||||||||||||||||| Sbjct: 5129 atttatatgtttcttcctgt 5110
>gb|AC087675.9| Homo sapiens chromosome 18, clone RP11-871M19, complete sequence Length = 168201 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 555 atgtatccagctatatgtaatttatatgtttc 586 |||||| ||| |||||||| |||||||||||| Sbjct: 11814 atgtatacagatatatgtagtttatatgtttc 11845
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 ggcaagaaggtcatggccgcctgc 342 ||||||||| |||||||||||||| Sbjct: 1700534 ggcaagaagatcatggccgcctgc 1700557
>emb|BX649605.1| Aspergillus fumigatus BAC pilot project supercontig; segment 1/3 Length = 345637 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tggtgctgatggtggcgccg 144 |||||||||||||||||||| Sbjct: 44735 tggtgctgatggtggcgccg 44716
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 gcgccggcgggcgcggaggcggcg 162 |||||||||||||||| ||||||| Sbjct: 49290 gcgccggcgggcgcggcggcggcg 49313
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 gcgccggcgggcgcggaggcggcg 162 |||||||||||||||| ||||||| Sbjct: 42639 gcgccggcgggcgcggcggcggcg 42662
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 124 gtggtgctgatggtggcgccggcgggcg 151 |||||| |||||||||||||| |||||| Sbjct: 194260 gtggtgatgatggtggcgccgccgggcg 194233
>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6 Length = 233050 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 574 atttatatgtttcttcctgt 593 |||||||||||||||||||| Sbjct: 200507 atttatatgtttcttcctgt 200488
>gb|BC102088.1| Bos taurus cDNA clone IMAGE:7945820 Length = 841 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 gctggtggtggcgctcctggcctt 116 ||||||||||||| |||||||||| Sbjct: 65 gctggtggtggcggtcctggcctt 88
>gb|AC009116.8| Homo sapiens chromosome 16 clone RP11-477D3, complete sequence Length = 172533 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 cggcgggcgcggaggcggcg 162 |||||||||||||||||||| Sbjct: 72277 cggcgggcgcggaggcggcg 72258
>gb|AC160000.9| Mus musculus 6 BAC RP24-340J19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 198476 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 ctgacgatgtatgtggagtt 508 |||||||||||||||||||| Sbjct: 152400 ctgacgatgtatgtggagtt 152381
>gb|AC007814.6|AC007814 Drosophila melanogaster, chromosome 3R, region 91D-91E, BAC clone BACR44N12, complete sequence Length = 204173 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 565 ctatatgtaatttatatgtttctt 588 |||||| ||||||||||||||||| Sbjct: 59487 ctatatctaatttatatgtttctt 59510
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cggcgggcgcggaggcggcg 162 |||||||||||||||||||| Sbjct: 7918642 cggcgggcgcggaggcggcg 7918661
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 tacgtacgagtcgatcaatc 55 |||||||||||||||||||| Sbjct: 29057608 tacgtacgagtcgatcaatc 29057627
>gb|AC009242.5| Homo sapiens BAC clone RP11-557N21 from 2, complete sequence Length = 158395 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 tatatgtaatttatatgttt 585 |||||||||||||||||||| Sbjct: 136718 tatatgtaatttatatgttt 136737
>gb|AC153657.4| Mus musculus BAC clone RP23-324B3 from chromosome 12, complete sequence Length = 208058 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tttcatgtgtgttcatgtgt 460 |||||||||||||||||||| Sbjct: 133729 tttcatgtgtgttcatgtgt 133710
>gb|AC068999.15|AC068999 Homo sapiens chromosome 18 clone RP11-70G19, complete sequence Length = 194813 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tgtgttcatgtgtcagtgtt 467 |||||||||||||||||||| Sbjct: 23058 tgtgttcatgtgtcagtgtt 23039
>dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0047E11 Length = 148109 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 tacgtacgagtcgatcaatc 55 |||||||||||||||||||| Sbjct: 101966 tacgtacgagtcgatcaatc 101985
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0421H07 Length = 158126 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 tacgtacgagtcgatcaatc 55 |||||||||||||||||||| Sbjct: 17974 tacgtacgagtcgatcaatc 17993
>gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosome 6, complete sequence Length = 230020 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 ctgacgatgtatgtggagtt 508 |||||||||||||||||||| Sbjct: 74166 ctgacgatgtatgtggagtt 74147
>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence Length = 256992 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 192 cgcgggggccatcatggggaacgcggcg 219 ||||||||||||| ||||||||| |||| Sbjct: 220560 cgcgggggccatcctggggaacgaggcg 220587
>dbj|AK107948.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-B08, full insert sequence Length = 967 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cggcgggcgcggaggcggcg 162 |||||||||||||||||||| Sbjct: 50 cggcgggcgcggaggcggcg 69
>emb|CR628394.17| Zebrafish DNA sequence from clone DKEY-204A24 in linkage group 19, complete sequence Length = 242800 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 tatatgtaatttatatgttt 585 |||||||||||||||||||| Sbjct: 112789 tatatgtaatttatatgttt 112808
>emb|BX294662.13| Zebrafish DNA sequence from clone DKEYP-117E6 in linkage group 20, complete sequence Length = 154558 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 437 catgtttcatgtgtgttcatgtgt 460 ||||||||||||| |||||||||| Sbjct: 5932 catgtttcatgtgagttcatgtgt 5955
>emb|AL928920.5| Zebrafish DNA sequence from clone DKEY-14A7 in linkage group 20, complete sequence Length = 195351 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 tgtgtgttcatgtgtcagtg 465 |||||||||||||||||||| Sbjct: 175566 tgtgtgttcatgtgtcagtg 175547
>gb|AY103625.1| Zea mays PCO091587 mRNA sequence Length = 1085 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 aacggcaagaaggtcatggc 335 |||||||||||||||||||| Sbjct: 384 aacggcaagaaggtcatggc 403
>emb|AL117193.2|CEY105C5A Caenorhabditis elegans YAC Y105C5A, complete sequence Length = 314838 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 tatctaaatttctgaatata 541 |||||||||||||||||||| Sbjct: 208298 tatctaaatttctgaatata 208317 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 tatctaaatttctgaatata 541 |||||||||||||||||||| Sbjct: 205478 tatctaaatttctgaatata 205497
>gb|AE003724.3| Drosophila melanogaster chromosome 3R, section 62 of 118 of the complete sequence Length = 232330 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 565 ctatatgtaatttatatgtttctt 588 |||||| ||||||||||||||||| Sbjct: 38580 ctatatctaatttatatgtttctt 38603
>dbj|AP000824.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-678L3, complete sequence Length = 186915 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 atgtgtcagtgtttcccaac 474 |||||||||||||||||||| Sbjct: 181673 atgtgtcagtgtttcccaac 181692
>dbj|AP005130.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-168H23, complete sequence Length = 181276 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tgtgttcatgtgtcagtgtt 467 |||||||||||||||||||| Sbjct: 158102 tgtgttcatgtgtcagtgtt 158083
>gb|AC109314.8| Homo sapiens chromosome 18, clone CTD-3135I6, complete sequence Length = 221501 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 555 atgtatccagctatatgtaatttatatgtttc 586 |||||| ||| |||||||| |||||||||||| Sbjct: 30125 atgtatacagatatatgtagtttatatgtttc 30094
>emb|AL031770.12|HS20B11 Human DNA sequence from clone RP1-20B11 on chromosome 6p25.1-25.3, complete sequence Length = 140385 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gcaagatgagggagcagcag 258 |||||||||||||||||||| Sbjct: 106800 gcaagatgagggagcagcag 106781
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cggcgggcgcggaggcggcg 162 |||||||||||||||||||| Sbjct: 7918523 cggcgggcgcggaggcggcg 7918542
>emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa0077B14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153111 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 cggcgggcgcggaggcggcg 162 |||||||||||||||||||| Sbjct: 81528 cggcgggcgcggaggcggcg 81509
>gb|AF038165.1|AF038165 Pan troglodytes epithelial sodium channel delta subunit mRNA, complete cds Length = 1917 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 119 cggcagtggtgctgatggtggcgccggc 146 |||| ||||||||||||||||| ||||| Sbjct: 117 cggcggtggtgctgatggtggccccggc 90
>gb|M12896.1|DROOPSAA D.melanogaster opsin gene Rh2, complete cds Length = 1893 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 565 ctatatgtaatttatatgtttctt 588 |||||| ||||||||||||||||| Sbjct: 1308 ctatatctaatttatatgtttctt 1331 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,903,382 Number of Sequences: 3902068 Number of extensions: 4903382 Number of successful extensions: 116517 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114785 Number of HSP's gapped (non-prelim): 1732 length of query: 594 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 571 effective length of database: 17,143,297,704 effective search space: 9788822988984 effective search space used: 9788822988984 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
