ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart41d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478767.1| Oryza sativa (japonica cultivar-group), mRNA 398 e-108
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 297 2e-77
3dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 297 2e-77
4ref|NM_115608.3| Arabidopsis thaliana nucleic acid binding / zin... 68 3e-08
5emb|AL133248.1|ATT8H10 Arabidopsis thaliana DNA chromosome 3, BA... 68 3e-08
6gb|BT006223.1| Arabidopsis thaliana At3g57480 gene, complete cds 68 3e-08
7emb|BX826127.1|CNS0A4U5 Arabidopsis thaliana Full-length cDNA Co... 68 3e-08
8dbj|AK119096.1| Arabidopsis thaliana At3g57480 mRNA for unknown ... 68 3e-08
9ref|NM_180027.1| Arabidopsis thaliana nucleic acid binding / zin... 56 1e-04
10gb|AY096620.1| Arabidopsis thaliana unknown protein (At2g41835) ... 56 1e-04
11gb|AY065272.1| Arabidopsis thaliana unknown protein (At2g41835) ... 56 1e-04
12gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map... 56 1e-04
13emb|BX819809.1|CNS0A9CF Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
14emb|BX820468.1|CNS0A9MU Arabidopsis thaliana Full-length cDNA Co... 48 0.030
15emb|AJ870302.1| Cucumis sativus mRNA for putative zinc finger pr... 44 0.47
16emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chro... 44 0.47
17gb|AC124345.4| Mus musculus BAC clone RP24-459N19 from chromosom... 42 1.9
18gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 1.9
19emb|AL355301.9| Human DNA sequence from clone RP11-594J24 on chr... 42 1.9
20gb|AC104260.5| Homo sapiens chromosome 15, clone CTD-2536I1, com... 42 1.9
21gb|AC016322.9| Homo sapiens chromosome 15, clone RP11-29B16, com... 42 1.9
22gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complet... 42 1.9
23gb|AC160979.2| Mus musculus BAC clone RP23-437B11 from chromosom... 42 1.9
24gb|AC068588.20| Homo sapiens chromosome 17, clone RP11-659G19, c... 42 1.9
25gb|AC079410.3| Homo sapiens chromosome 16 clone CTC-775M10, comp... 42 1.9
26gb|AC162466.6| Mus musculus 6 BAC RP23-196O2 (Roswell Park Cance... 40 7.3
27gb|AY498874.1| Streptomyces lavendulae linear plasmid pSLV45 SLV... 40 7.3
28gb|AC154422.2| Mus musculus BAC clone RP24-218O2 from chromosome... 40 7.3
29ref|XM_841771.1| Trypanosoma brucei TREU927 hypothetical protein... 40 7.3
30ref|XM_824255.1| Trypanosoma brucei TREU927 hypothetical protein... 40 7.3
31gb|AC112663.9| Mus musculus chromosome 5, clone RP23-465J5, comp... 40 7.3
32emb|AL359852.20| Human DNA sequence from clone RP11-299J5 on chr... 40 7.3
33emb|AL031678.2|HS816K17 Human DNA sequence from clone RP4-816K17... 40 7.3
34emb|AL034351.1|HS879K22 Human DNA sequence from clone RP5-879K22... 40 7.3
35emb|BX908401.14| Zebrafish DNA sequence from clone DKEY-53F14 in... 40 7.3
36gb|AC153596.5| Mus musculus 6 BAC RP23-305C1 (Roswell Park Cance... 40 7.3
37dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
38gb|AC139452.4| Homo sapiens 3 BAC RP11-301L7 (Roswell Park Cance... 40 7.3
39gb|AC068630.21| Homo sapiens 3 BAC RP11-289N10 (Roswell Park Can... 40 7.3
40dbj|AK174490.1| Ciona intestinalis cDNA, clone:cieg035n16, full ... 40 7.3
41dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
42emb|CT025682.18| Mouse DNA sequence from clone RP23-442B10 on ch... 40 7.3
43emb|AJ810454.1| Gavialis gangeticus complete mitochondrial genome 40 7.3
44gb|AC169807.2| Rhesus Macaque CHR4 BAC CH250-23P16 (Children's H... 40 7.3
45emb|AL670292.9| Mouse DNA sequence from clone RP23-231H22 on chr... 40 7.3
46gb|AC123917.25| Mus musculus chromosome 15, clone RP23-281P5, co... 40 7.3 
>ref|XM_478767.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 873

 Score =  398 bits (201), Expect = e-108
 Identities = 360/413 (87%)
 Strand = Plus / Plus

                                                                       
Query: 130 atgggcacgccggagttccctgacctggggcggcactgcagcgtcggcgactgccaccag 189
           ||||| ||||||||||||||  |||||||   |||||||||||||||||||||| |||||
Sbjct: 1   atggggacgccggagttccccaacctgggcaagcactgcagcgtcggcgactgcaaccag 60

                                                                       
Query: 190 atcgatttcctccccttcacctgcgaccgatgcgacttcgtcttttgccttcagcaccga 249
           ||||| ||||| ||||||||||||||||| ||||||  ||||||||||||||||||||||
Sbjct: 61  atcgacttcctgcccttcacctgcgaccgctgcgaccacgtcttttgccttcagcaccga 120

                                                                       
Query: 250 agttatacatcacataaatgtccaaaggctaataataaggatgtcactgttgttgtgtgc 309
           ||||||||||| ||| | |||||||| || ||| | |||||||| |||||  |  | |||
Sbjct: 121 agttatacatcgcatcagtgtccaaatgcaaatcagaaggatgtgactgtcctcatctgc 180

                                                                       
Query: 310 ccattatgtgctaaaggagttcgcctcaatccaaatgaagatgcaaacatcacctgggag 369
           ||| | |||||||||||||||||||| || || || |||||| |||||||||||||||| 
Sbjct: 181 ccactctgtgctaaaggagttcgcctgaacccgaacgaagatccaaacatcacctgggac 240

                                                                       
Query: 370 tctcatgttaataccgactgcgatccatcaaattaccagagagcaacaaagaaaaagaaa 429
            | ||||| ||||  ||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct: 241 acccatgtcaatagtgactgtgatccatcaaattaccagaaagtaacaaagaaaaagaaa 300

                                                                       
Query: 430 tgcccagttcctgggtgcagagaagcactgacattttcaaacacaatcatgtgcaaagat 489
           |||||||| ||||||||||||||  |||||||||||||||||||||| |  |||||||||
Sbjct: 301 tgcccagtgcctgggtgcagagagacactgacattttcaaacacaattagatgcaaagat 360

                                                                
Query: 490 tgcagcaaagagcactgcctcaagcacagatttggtccggatcacaagtgtcc 542
           |||| |||||| |||||||| ||||| |||||||| || ||||||||||||||
Sbjct: 361 tgcaccaaagaacactgcctgaagcatagatttggacctgatcacaagtgtcc 413
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  297 bits (150), Expect = 2e-77
 Identities = 273/314 (86%)
 Strand = Plus / Plus

                                                                            
Query: 229      gtcttttgccttcagcaccgaagttatacatcacataaatgtccaaaggctaataataag 288
                |||||||||||||||||||||||||||||||| ||| | |||||||| || ||| | |||
Sbjct: 22878619 gtcttttgccttcagcaccgaagttatacatcgcatcagtgtccaaatgcaaatcagaag 22878678

                                                                            
Query: 289      gatgtcactgttgttgtgtgcccattatgtgctaaaggagttcgcctcaatccaaatgaa 348
                ||||| |||||  |  | |||||| | |||||||||||||||||||| || || || |||
Sbjct: 22878679 gatgtgactgtcctcatctgcccactctgtgctaaaggagttcgcctgaacccgaacgaa 22878738

                                                                            
Query: 349      gatgcaaacatcacctgggagtctcatgttaataccgactgcgatccatcaaattaccag 408
                ||| ||||||||||||||||  | ||||| ||||  ||||| ||||||||||||||||||
Sbjct: 22878739 gatccaaacatcacctgggacacccatgtcaatagtgactgtgatccatcaaattaccag 22878798

                                                                            
Query: 409      agagcaacaaagaaaaagaaatgcccagttcctgggtgcagagaagcactgacattttca 468
                | || |||||||||||||||||||||||| ||||||||||||||  ||||||||||||||
Sbjct: 22878799 aaagtaacaaagaaaaagaaatgcccagtgcctgggtgcagagagacactgacattttca 22878858

                                                                            
Query: 469      aacacaatcatgtgcaaagattgcagcaaagagcactgcctcaagcacagatttggtccg 528
                |||||||| |  ||||||||||||| |||||| |||||||| ||||| |||||||| || 
Sbjct: 22878859 aacacaattagatgcaaagattgcaccaaagaacactgcctgaagcatagatttggacct 22878918

                              
Query: 529      gatcacaagtgtcc 542
                ||||||||||||||
Sbjct: 22878919 gatcacaagtgtcc 22878932



 Score =  111 bits (56), Expect = 2e-21
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                            
Query: 130      atgggcacgccggagttccctgacctggggcggcactgcagcgtcggcgactgccaccag 189
                ||||| ||||||||||||||  |||||||   |||||||||||||||||||||| |||||
Sbjct: 22877348 atggggacgccggagttccccaacctgggcaagcactgcagcgtcggcgactgcaaccag 22877407

                                                    
Query: 190      atcgatttcctccccttcacctgcgaccgatgcgac 225
                ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 22877408 atcgacttcctgcccttcacctgcgaccgctgcgac 22877443
to top
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1019_E02
          Length = 121607

 Score =  297 bits (150), Expect = 2e-77
 Identities = 273/314 (86%)
 Strand = Plus / Plus

                                                                         
Query: 229   gtcttttgccttcagcaccgaagttatacatcacataaatgtccaaaggctaataataag 288
             |||||||||||||||||||||||||||||||| ||| | |||||||| || ||| | |||
Sbjct: 71886 gtcttttgccttcagcaccgaagttatacatcgcatcagtgtccaaatgcaaatcagaag 71945

                                                                         
Query: 289   gatgtcactgttgttgtgtgcccattatgtgctaaaggagttcgcctcaatccaaatgaa 348
             ||||| |||||  |  | |||||| | |||||||||||||||||||| || || || |||
Sbjct: 71946 gatgtgactgtcctcatctgcccactctgtgctaaaggagttcgcctgaacccgaacgaa 72005

                                                                         
Query: 349   gatgcaaacatcacctgggagtctcatgttaataccgactgcgatccatcaaattaccag 408
             ||| ||||||||||||||||  | ||||| ||||  ||||| ||||||||||||||||||
Sbjct: 72006 gatccaaacatcacctgggacacccatgtcaatagtgactgtgatccatcaaattaccag 72065

                                                                         
Query: 409   agagcaacaaagaaaaagaaatgcccagttcctgggtgcagagaagcactgacattttca 468
             | || |||||||||||||||||||||||| ||||||||||||||  ||||||||||||||
Sbjct: 72066 aaagtaacaaagaaaaagaaatgcccagtgcctgggtgcagagagacactgacattttca 72125

                                                                         
Query: 469   aacacaatcatgtgcaaagattgcagcaaagagcactgcctcaagcacagatttggtccg 528
             |||||||| |  ||||||||||||| |||||| |||||||| ||||| |||||||| || 
Sbjct: 72126 aacacaattagatgcaaagattgcaccaaagaacactgcctgaagcatagatttggacct 72185

                           
Query: 529   gatcacaagtgtcc 542
             ||||||||||||||
Sbjct: 72186 gatcacaagtgtcc 72199



 Score =  111 bits (56), Expect = 2e-21
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                         
Query: 130   atgggcacgccggagttccctgacctggggcggcactgcagcgtcggcgactgccaccag 189
             ||||| ||||||||||||||  |||||||   |||||||||||||||||||||| |||||
Sbjct: 70615 atggggacgccggagttccccaacctgggcaagcactgcagcgtcggcgactgcaaccag 70674

                                                 
Query: 190   atcgatttcctccccttcacctgcgaccgatgcgac 225
             ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 70675 atcgacttcctgcccttcacctgcgaccgctgcgac 70710
to top
>ref|NM_115608.3| Arabidopsis thaliana nucleic acid binding / zinc ion binding
           AT3G57480 mRNA, complete cds
          Length = 1128

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                       
Query: 289 gatgtcactgttgttgtgtgcccattatgtgctaaaggagttcgcctcaatccaaatgaa 348
           ||||||||||| ||| | || ||||||||||||||||||||| |  | || ||  | |||
Sbjct: 395 gatgtcactgtggttatttgtccattatgtgctaaaggagttagattaaaccctgacgaa 454

                                                             
Query: 349 gatgcaaacatcacctgggagtctcatgttaataccgactgcgatccatc 398
           ||| | |||||||||||||||   ||||||||||| ||||| ||||||||
Sbjct: 455 gatcccaacatcacctgggagaaacatgttaatacagactgtgatccatc 504
to top
>emb|AL133248.1|ATT8H10 Arabidopsis thaliana DNA chromosome 3, BAC clone T8H10
          Length = 87503

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                         
Query: 289   gatgtcactgttgttgtgtgcccattatgtgctaaaggagttcgcctcaatccaaatgaa 348
             ||||||||||| ||| | || ||||||||||||||||||||| |  | || ||  | |||
Sbjct: 32509 gatgtcactgtggttatttgtccattatgtgctaaaggagttagattaaaccctgacgaa 32450

                                                               
Query: 349   gatgcaaacatcacctgggagtctcatgttaataccgactgcgatccatc 398
             ||| | |||||||||||||||   ||||||||||| ||||| ||||||||
Sbjct: 32449 gatcccaacatcacctgggagaaacatgttaatacagactgtgatccatc 32400
to top
>gb|BT006223.1| Arabidopsis thaliana At3g57480 gene, complete cds
          Length = 750

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                       
Query: 289 gatgtcactgttgttgtgtgcccattatgtgctaaaggagttcgcctcaatccaaatgaa 348
           ||||||||||| ||| | || ||||||||||||||||||||| |  | || ||  | |||
Sbjct: 160 gatgtcactgtggttatttgtccattatgtgctaaaggagttagattaaaccctgacgaa 219

                                                             
Query: 349 gatgcaaacatcacctgggagtctcatgttaataccgactgcgatccatc 398
           ||| | |||||||||||||||   ||||||||||| ||||| ||||||||
Sbjct: 220 gatcccaacatcacctgggagaaacatgttaatacagactgtgatccatc 269
to top
>emb|BX826127.1|CNS0A4U5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL85ZH12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 840

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                       
Query: 289 gatgtcactgttgttgtgtgcccattatgtgctaaaggagttcgcctcaatccaaatgaa 348
           ||||||||||| ||| | || ||||||||||||||||||||| |  | || ||  | |||
Sbjct: 103 gatgtcactgtggttatttgtccattatgtgctaaaggagttagattaaaccctgacgaa 162

                                                             
Query: 349 gatgcaaacatcacctgggagtctcatgttaataccgactgcgatccatc 398
           ||| | |||||||||||||||   ||||||||||| ||||| ||||||||
Sbjct: 163 gatcccaacatcacctgggagaaacatgttaatacagactgtgatccatc 212
to top
>dbj|AK119096.1| Arabidopsis thaliana At3g57480 mRNA for unknown protein, complete
           cds, clone: RAFL21-44-N05
          Length = 1070

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                       
Query: 289 gatgtcactgttgttgtgtgcccattatgtgctaaaggagttcgcctcaatccaaatgaa 348
           ||||||||||| ||| | || ||||||||||||||||||||| |  | || ||  | |||
Sbjct: 395 gatgtcactgtggttatttgtccattatgtgctaaaggagttagattaaaccctgacgaa 454

                                                             
Query: 349 gatgcaaacatcacctgggagtctcatgttaataccgactgcgatccatc 398
           ||| | |||||||||||||||   ||||||||||| ||||| ||||||||
Sbjct: 455 gatcccaacatcacctgggagaaacatgttaatacagactgtgatccatc 504
to top
>ref|NM_180027.1| Arabidopsis thaliana nucleic acid binding / zinc ion binding
           AT2G41835 mRNA, complete cds
          Length = 1214

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 121/152 (79%)
 Strand = Plus / Plus

                                                                       
Query: 289 gatgtcactgttgttgtgtgcccattatgtgctaaaggagttcgcctcaatccaaatgaa 348
           ||||| ||||| ||| | |||||| | |||||||||||||| ||  | || ||||| |||
Sbjct: 300 gatgtgactgtagttatctgcccactctgtgctaaaggagtccgattaaacccaaacgaa 359

                                                                       
Query: 349 gatgcaaacatcacctgggagtctcatgttaataccgactgcgatccatcaaattaccag 408
           ||  |||| || || ||||||   ||||| ||||||||||| || |||||||| ||| | 
Sbjct: 360 gacccaaatataacatgggagaaacatgtcaataccgactgtgacccatcaaactacgaa 419

                                           
Query: 409 agagcaacaaagaaaaagaaatgcccagttcc 440
           | ||| |||||||| |||||||| || |||||
Sbjct: 420 aaagctacaaagaagaagaaatgtcccgttcc 451
to top
>gb|AY096620.1| Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds
          Length = 871

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 121/152 (79%)
 Strand = Plus / Plus

                                                                       
Query: 289 gatgtcactgttgttgtgtgcccattatgtgctaaaggagttcgcctcaatccaaatgaa 348
           ||||| ||||| ||| | |||||| | |||||||||||||| ||  | || ||||| |||
Sbjct: 160 gatgtgactgtagttatctgcccactctgtgctaaaggagtccgattaaacccaaacgaa 219

                                                                       
Query: 349 gatgcaaacatcacctgggagtctcatgttaataccgactgcgatccatcaaattaccag 408
           ||  |||| || || ||||||   ||||| ||||||||||| || |||||||| ||| | 
Sbjct: 220 gacccaaatataacatgggagaaacatgtcaataccgactgtgacccatcaaactacgaa 279

                                           
Query: 409 agagcaacaaagaaaaagaaatgcccagttcc 440
           | ||| |||||||| |||||||| || |||||
Sbjct: 280 aaagctacaaagaagaagaaatgtcccgttcc 311
to top
>gb|AY065272.1| Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds
          Length = 1233

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 121/152 (79%)
 Strand = Plus / Plus

                                                                       
Query: 289 gatgtcactgttgttgtgtgcccattatgtgctaaaggagttcgcctcaatccaaatgaa 348
           ||||| ||||| ||| | |||||| | |||||||||||||| ||  | || ||||| |||
Sbjct: 300 gatgtgactgtagttatctgcccactctgtgctaaaggagtccgattaaacccaaacgaa 359

                                                                       
Query: 349 gatgcaaacatcacctgggagtctcatgttaataccgactgcgatccatcaaattaccag 408
           ||  |||| || || ||||||   ||||| ||||||||||| || |||||||| ||| | 
Sbjct: 360 gacccaaatataacatgggagaaacatgtcaataccgactgtgacccatcaaactacgaa 419

                                           
Query: 409 agagcaacaaagaaaaagaaatgcccagttcc 440
           | ||| |||||||| |||||||| || |||||
Sbjct: 420 aaagctacaaagaagaagaaatgtcccgttcc 451
to top
>gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map CIC11C08, complete
             sequence
          Length = 91071

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 121/152 (79%)
 Strand = Plus / Plus

                                                                         
Query: 289   gatgtcactgttgttgtgtgcccattatgtgctaaaggagttcgcctcaatccaaatgaa 348
             ||||| ||||| ||| | |||||| | |||||||||||||| ||  | || ||||| |||
Sbjct: 21836 gatgtgactgtagttatctgcccactctgtgctaaaggagtccgattaaacccaaacgaa 21895

                                                                         
Query: 349   gatgcaaacatcacctgggagtctcatgttaataccgactgcgatccatcaaattaccag 408
             ||  |||| || || ||||||   ||||| ||||||||||| || |||||||| ||| | 
Sbjct: 21896 gacccaaatataacatgggagaaacatgtcaataccgactgtgacccatcaaactacgaa 21955

                                             
Query: 409   agagcaacaaagaaaaagaaatgcccagttcc 440
             | ||| |||||||| |||||||| || |||||
Sbjct: 21956 aaagctacaaagaagaagaaatgtcccgttcc 21987
to top
>emb|BX819809.1|CNS0A9CF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS2ZH07 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1147

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 121/152 (79%)
 Strand = Plus / Plus

                                                                       
Query: 289 gatgtcactgttgttgtgtgcccattatgtgctaaaggagttcgcctcaatccaaatgaa 348
           ||||| ||||| ||| | |||||| | |||||||||||||| ||  | || ||||| |||
Sbjct: 278 gatgtgactgtagttatctgcccactctgtgctaaaggagtccgattaaacccaaacgaa 337

                                                                       
Query: 349 gatgcaaacatcacctgggagtctcatgttaataccgactgcgatccatcaaattaccag 408
           ||  |||| || || ||||||   ||||| ||||||||||| || |||||||| ||| | 
Sbjct: 338 gacccaaatataacatgggagaaacatgtcaataccgactgtgacccatcaaactacgaa 397

                                           
Query: 409 agagcaacaaagaaaaagaaatgcccagttcc 440
           | ||| |||||||| |||||||| || |||||
Sbjct: 398 aaagctacaaagaagaagaaatgtcccgttcc 429
to top
>emb|BX820468.1|CNS0A9MU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH38ZB10 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1158

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 120/152 (78%)
 Strand = Plus / Plus

                                                                       
Query: 289 gatgtcactgttgttgtgtgcccattatgtgctaaaggagttcgcctcaatccaaatgaa 348
           ||||| ||||| ||| | |||||| | |||||||||||||| ||  | || ||||| |||
Sbjct: 279 gatgtgactgtagttatctgcccactctgtgctaaaggagtccgattaaacccaaacgaa 338

                                                                       
Query: 349 gatgcaaacatcacctgggagtctcatgttaataccgactgcgatccatcaaattaccag 408
           ||  |||| || || ||||||   ||||| |||||||||||  | |||||||| ||| | 
Sbjct: 339 gacccaaatataacatgggagaaacatgtcaataccgactgttacccatcaaactacgaa 398

                                           
Query: 409 agagcaacaaagaaaaagaaatgcccagttcc 440
           | ||| |||||||| |||||||| || |||||
Sbjct: 399 aaagctacaaagaagaagaaatgtcccgttcc 430
to top
>emb|AJ870302.1| Cucumis sativus mRNA for putative zinc finger protein (se1a12 gene)
          Length = 1274

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 316 tgtgctaaaggagttcgcctcaatccaaatgaagatgcaaacatcacctgggag 369
           ||||| ||||||||||| |||| |||| || ||||| ||||||| || ||||||
Sbjct: 352 tgtgccaaaggagttcgtctcattccagatcaagatccaaacattacttgggag 405
to top
>emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chromosome 14, complete
             sequence
          Length = 201727

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 405   ccagagagcaacaaagaaaaagaaat 430
             ||||||| ||||||||||||||||||
Sbjct: 49173 ccagagaacaacaaagaaaaagaaat 49198
to top
>gb|AC124345.4| Mus musculus BAC clone RP24-459N19 from chromosome 15, complete sequence
          Length = 184532

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 447    cagagaagcactgacattttc 467
              |||||||||||||||||||||
Sbjct: 127777 cagagaagcactgacattttc 127757
to top
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 57      gccgtcggagcggacgggcgc 77
               |||||||||||||||||||||
Sbjct: 1232754 gccgtcggagcggacgggcgc 1232734
to top
>emb|AL355301.9| Human DNA sequence from clone RP11-594J24 on chromosome 10 Contains the
             5' end of gene FLJ37160 and twp CpG islands, complete
             sequence
          Length = 135538

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 250   agttatacatcacataaatgt 270
             |||||||||||||||||||||
Sbjct: 73094 agttatacatcacataaatgt 73074
to top
>gb|AC104260.5| Homo sapiens chromosome 15, clone CTD-2536I1, complete sequence
          Length = 191528

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 460    acattttcaaacacaatcatg 480
              |||||||||||||||||||||
Sbjct: 150627 acattttcaaacacaatcatg 150607
to top
>gb|AC016322.9| Homo sapiens chromosome 15, clone RP11-29B16, complete sequence
          Length = 187466

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 460   acattttcaaacacaatcatg 480
             |||||||||||||||||||||
Sbjct: 98050 acattttcaaacacaatcatg 98070
to top
>gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complete sequence
          Length = 203106

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 447  cagagaagcactgacattttc 467
            |||||||||||||||||||||
Sbjct: 9778 cagagaagcactgacattttc 9798
to top
>gb|AC160979.2| Mus musculus BAC clone RP23-437B11 from chromosome 15, complete sequence
          Length = 216014

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 447    cagagaagcactgacattttc 467
              |||||||||||||||||||||
Sbjct: 160041 cagagaagcactgacattttc 160061
to top
>gb|AC068588.20| Homo sapiens chromosome 17, clone RP11-659G19, complete sequence
          Length = 56081

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 399   aaattaccagagagcaacaaa 419
             |||||||||||||||||||||
Sbjct: 22051 aaattaccagagagcaacaaa 22071
to top
>gb|AC079410.3| Homo sapiens chromosome 16 clone CTC-775M10, complete sequence
          Length = 116293

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 299    ttgttgtgtgcccattatgtg 319
              |||||||||||||||||||||
Sbjct: 102565 ttgttgtgtgcccattatgtg 102585
to top
>gb|AC162466.6| Mus musculus 6 BAC RP23-196O2 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 186817

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 460  acattttcaaacacaatcat 479
            ||||||||||||||||||||
Sbjct: 4687 acattttcaaacacaatcat 4668
to top
>gb|AY498874.1| Streptomyces lavendulae linear plasmid pSLV45 SLV.1 (SLV.1), SLV.1B
             (SLV.1B), SLV.2 (SLV.2), SLV.3 (SLV.3), SLV.4 (SLV.4),
             SLV.5 (SLV.5), SLV.6 (SLV.6), SLV.7, SLV.8, SLV.9 (SLV.9),
             SLV.10 (SLV.10), SLV.11 (SLV.11), SLV.12 (SLV.12), SLV.13
             (SLV.13), SLV.14 (SLV.14), SLV.15 (SLV.15), SLV.16
             (SLV.16), SLV.17 (SLV.17), SLV.18 (SLV.18), RegA (regA),
             TraSLVA (traSLVA), SLV.21 (SLV.21), ParSLV (parSLV),
             SLV.23 (SLV.23), SLV.24 (SLV.24), TpgSLV (tpgSLV), SLV.26
             (SLV.26), SLV.27 (SLV.27), TraSLVB (traSLVB), SLV.29
             (SLV.29), SLV.30 (SLV.30), TraSLR, SLV.32 (SLV.32), SLV.33
             (SLV.33), SLV.34 (SLV.34), SLV.35 (SLV.35), SLV.36
             (SLV.36), and SLV.37 (SLV.37) genes, complete cds
          Length = 41987

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    ggagcggacgggcgcgagtc 82
             ||||||||||||||||||||
Sbjct: 22478 ggagcggacgggcgcgagtc 22459
to top
>gb|AC154422.2| Mus musculus BAC clone RP24-218O2 from chromosome 13, complete
           sequence
          Length = 170866

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 453 agcactgacattttcaaaca 472
           ||||||||||||||||||||
Sbjct: 401 agcactgacattttcaaaca 382
to top
>ref|XM_841771.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.3560)
           partial mRNA
          Length = 2598

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 413 caacaaagaaaaagaaatgc 432
           ||||||||||||||||||||
Sbjct: 819 caacaaagaaaaagaaatgc 838
to top
>ref|XM_824255.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.52.0005)
           partial mRNA
          Length = 2208

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 331 cgcctcaatccaaatgaaga 350
           ||||||||||||||||||||
Sbjct: 839 cgcctcaatccaaatgaaga 820
to top
>gb|AC112663.9| Mus musculus chromosome 5, clone RP23-465J5, complete sequence
          Length = 228717

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 445    tgcagagaagcactgacattttcaaaca 472
              ||||||| ||| ||||||||||||||||
Sbjct: 110440 tgcagagtagctctgacattttcaaaca 110413
to top
>emb|AL359852.20| Human DNA sequence from clone RP11-299J5 on chromosome 6, complete
             sequence
          Length = 120512

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 412   gcaacaaagaaaaagaaatg 431
             ||||||||||||||||||||
Sbjct: 40200 gcaacaaagaaaaagaaatg 40181
to top
>emb|AL031678.2|HS816K17 Human DNA sequence from clone RP4-816K17 on chromosome 20p12.2-13
              Contains the TGM3 gene for  transglutaminase 3 (E
              polypeptide, protein-glutamine-gamma-glutamyltransferase)
              and the 5' end of the TGM6 gene for transglutaminase 6,
              complete sequence
          Length = 115857

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 417    aaagaaaaagaaatgcccag 436
              ||||||||||||||||||||
Sbjct: 101387 aaagaaaaagaaatgcccag 101368
to top
>emb|AL034351.1|HS879K22 Human DNA sequence from clone RP5-879K22 on chromosome 1q32.1-41
            Contains part of the gene for melanoma antigen recognized
            by T cells 2 protein (MART2), complete sequence
          Length = 137678

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 424  aagaaatgcccagttcctgg 443
            ||||||||||||||||||||
Sbjct: 9656 aagaaatgcccagttcctgg 9637
to top
>emb|BX908401.14| Zebrafish DNA sequence from clone DKEY-53F14 in linkage group 18,
              complete sequence
          Length = 172346

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 406    cagagagcaacaaagaaaaa 425
              ||||||||||||||||||||
Sbjct: 120433 cagagagcaacaaagaaaaa 120414
to top
>gb|AC153596.5| Mus musculus 6 BAC RP23-305C1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 148062

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   acattttcaaacacaatcat 479
             ||||||||||||||||||||
Sbjct: 74892 acattttcaaacacaatcat 74911
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 463     ttttcaaacacaatcatgtg 482
               ||||||||||||||||||||
Sbjct: 6113723 ttttcaaacacaatcatgtg 6113742
to top
>gb|AC139452.4| Homo sapiens 3 BAC RP11-301L7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164897

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   aaagaaaaagaaatgcccag 436
             ||||||||||||||||||||
Sbjct: 48529 aaagaaaaagaaatgcccag 48510
to top
>gb|AC068630.21| Homo sapiens 3 BAC RP11-289N10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164161

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 408    gagagcaacaaagaaaaaga 427
              ||||||||||||||||||||
Sbjct: 119613 gagagcaacaaagaaaaaga 119632
to top
>dbj|AK174490.1| Ciona intestinalis cDNA, clone:cieg035n16, full insert sequence
          Length = 1676

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 407 agagagcaacaaagaaaaag 426
           ||||||||||||||||||||
Sbjct: 517 agagagcaacaaagaaaaag 536
to top
>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0486F07
          Length = 154926

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   ttttcaaacacaatcatgtg 482
             ||||||||||||||||||||
Sbjct: 69740 ttttcaaacacaatcatgtg 69759
to top
>emb|CT025682.18| Mouse DNA sequence from clone RP23-442B10 on chromosome 13, complete
            sequence
          Length = 65047

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 453  agcactgacattttcaaaca 472
            ||||||||||||||||||||
Sbjct: 1600 agcactgacattttcaaaca 1619
to top
>emb|AJ810454.1| Gavialis gangeticus complete mitochondrial genome
          Length = 17023

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   caacaaagaaaaagaaatgc 432
             ||||||||||||||||||||
Sbjct: 14124 caacaaagaaaaagaaatgc 14143
to top
>gb|AC169807.2| Rhesus Macaque CHR4 BAC CH250-23P16 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 172055

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 411    agcaacaaagaaaaagaaat 430
              ||||||||||||||||||||
Sbjct: 129009 agcaacaaagaaaaagaaat 128990
to top
>emb|AL670292.9| Mouse DNA sequence from clone RP23-231H22 on chromosome X, complete
              sequence
          Length = 217063

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 414    aacaaagaaaaagaaatgcc 433
              ||||||||||||||||||||
Sbjct: 209010 aacaaagaaaaagaaatgcc 209029
to top
>gb|AC123917.25| Mus musculus chromosome 15, clone RP23-281P5, complete sequence
          Length = 184959

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 415    acaaagaaaaagaaatgcccagtt 438
              |||||||||||||||| |||||||
Sbjct: 102684 acaaagaaaaagaaatccccagtt 102707


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,990,487
Number of Sequences: 3902068
Number of extensions: 4990487
Number of successful extensions: 112008
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111803
Number of HSP's gapped (non-prelim): 196
length of query: 542
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 519
effective length of database: 17,143,297,704
effective search space: 8897371508376
effective search space used: 8897371508376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top