ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart41d05 |
|---|---|
| Clone Library Name | barley_pub |
>Y2316_MYCBO (P63503) Putative aminotransferase Mb2316 (EC 2.6.1.-)| Length = 407 Score = 32.0 bits (71), Expect = 1.3 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Frame = +3 Query: 339 PIHLSSPVRGPLKA---KEAVRVLPAPLRWRKMLVAGLT*PTSFPSARTSSGCSG--AER 503 P+ ++SPV P A + RV+PAPLR + +F SAR SSG SG A Sbjct: 112 PVIVNSPVYAPFYAFVSHDGRRVIPAPLRGDGRIDLDAL-QEAFSSARASSGSSGNVAYL 170 Query: 504 TSNPSRRPPTLH 539 NP ++H Sbjct: 171 LCNPHNPTGSVH 182
>Y2294_MYCTU (P63502) Putative aminotransferase Rv2294/MT2351 (EC 2.6.1.-)| Length = 407 Score = 32.0 bits (71), Expect = 1.3 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Frame = +3 Query: 339 PIHLSSPVRGPLKA---KEAVRVLPAPLRWRKMLVAGLT*PTSFPSARTSSGCSG--AER 503 P+ ++SPV P A + RV+PAPLR + +F SAR SSG SG A Sbjct: 112 PVIVNSPVYAPFYAFVSHDGRRVIPAPLRGDGRIDLDAL-QEAFSSARASSGSSGNVAYL 170 Query: 504 TSNPSRRPPTLH 539 NP ++H Sbjct: 171 LCNPHNPTGSVH 182
>NEST_RAT (P21263) Nestin| Length = 1805 Score = 31.6 bits (70), Expect = 1.7 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 10/65 (15%) Frame = +1 Query: 151 PVAQVGV-REEQVPVDLLGQGDVLPAAGEGEVYPRVV---------RPNRSKIPGTVLPE 300 P+A GV E++ + L GQG AA EGE+ +V P ++P L Sbjct: 1190 PLATTGVGTEDKAELHLRGQGGEEEAAAEGELLQDIVGEAWSLGSSEPKEQRVPAEALDN 1249 Query: 301 ATGGA 315 GGA Sbjct: 1250 LEGGA 1254
>DRNF_AERHY (Q44064) Periplasmic deoxyribonuclease precursor (EC 3.1.21.-)| (DNase) Length = 237 Score = 31.2 bits (69), Expect = 2.2 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = +2 Query: 23 RYAPPSPAPRGRFVAARVRASEKLGVRLERNPAESRLSELGVRQWP--KWGCEKSK 184 R PP RG+ A + E+ G+RL + +L E RQ+P +W CE+++ Sbjct: 166 RVQPPKGPVRGQIARAYLYMGEQYGLRLAAQ--QRKLFEAWDRQYPADRWECERNR 219
>POLG_HCVK3 (Q81495) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3020 Score = 30.8 bits (68), Expect = 2.9 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 5/31 (16%) Frame = +3 Query: 498 ERTSNPSRRPPTLHGCC-----APPATPSRR 575 +R +P PPT+HGC APP P RR Sbjct: 2304 DRWKSPDYVPPTVHGCALPPKGAPPVPPPRR 2334
>DRNE_AERHY (P39658) Extracellular deoxyribonuclease precursor (EC 3.1.21.-)| (DNase) Length = 230 Score = 30.4 bits (67), Expect = 3.8 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = +2 Query: 32 PPSPAPRGRFVAARVRASEKLGVRLERNPAESRLSELGVRQWP--KWGCEKSK 184 PP RG+ A + S++ G+RL + +L E RQ+P +W CE+++ Sbjct: 162 PPKGPVRGQIARAYLYMSQQYGLRLAAQ--QRKLYEAWDRQYPADRWECERNR 212
>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2| Length = 902 Score = 30.4 bits (67), Expect = 3.8 Identities = 23/65 (35%), Positives = 30/65 (46%) Frame = +3 Query: 378 AKEAVRVLPAPLRWRKMLVAGLT*PTSFPSARTSSGCSGAERTSNPSRRPPTLHGCCAPP 557 A+EA AP VA P+S P+AR S S A R + P+ P + P Sbjct: 176 AEEAAAAASAPAP-----VAAAPAPSSAPAARAPSSPSSAPRPARPAGASP-----ASRP 225 Query: 558 ATPSR 572 ATP+R Sbjct: 226 ATPAR 230
>LEU2_THET8 (Q9ZND5) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 472 Score = 30.4 bits (67), Expect = 3.8 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Frame = -2 Query: 568 LGVAGGAQHPCKVGGLR-EGFDVLSAPEHPDEVLAEGKEVGYVNPATSIFRHRRGAGKTL 392 LGV GG + + GG E D+ S + + G +GYVNP + F++ G Sbjct: 191 LGVKGGLGYAYEYGGSAVEAMDMESRMTLCNMSIEGGARIGYVNPDETTFQYLEGRPYVP 250 Query: 391 TASFAFNGPRTGEERWIGLRGTP 323 S R RW+ R P Sbjct: 251 KGSEWEEAKR----RWLAWRSDP 269
>LEU2_THET2 (Q72JB3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 472 Score = 30.4 bits (67), Expect = 3.8 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Frame = -2 Query: 568 LGVAGGAQHPCKVGGLR-EGFDVLSAPEHPDEVLAEGKEVGYVNPATSIFRHRRGAGKTL 392 LGV GG + + GG E D+ S + + G +GYVNP + F++ G Sbjct: 191 LGVKGGLGYAYEYGGSAVEAMDMESRMTLCNMSIEGGARIGYVNPDETTFQYLEGRPYVP 250 Query: 391 TASFAFNGPRTGEERWIGLRGTP 323 S R RW+ R P Sbjct: 251 KGSEWEEAKR----RWLAWRSDP 269
>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2| Length = 916 Score = 30.4 bits (67), Expect = 3.8 Identities = 23/65 (35%), Positives = 30/65 (46%) Frame = +3 Query: 378 AKEAVRVLPAPLRWRKMLVAGLT*PTSFPSARTSSGCSGAERTSNPSRRPPTLHGCCAPP 557 A+EA AP VA P+S P+AR S S A R + P+ P + P Sbjct: 190 AEEAAAAASAPAP-----VAAAPAPSSAPAARAPSSPSSAPRPARPAGASP-----ASRP 239 Query: 558 ATPSR 572 ATP+R Sbjct: 240 ATPAR 244
>PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing family A member 4| (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1) Length = 779 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = +3 Query: 462 PSARTSSGCSGAERTSNPSRRPPTLHGCCAPPATP 566 P +R S S S P+RRPP G APPA P Sbjct: 235 PLSRPPSPLSLPRPRSAPARRPPAPSGDTAPPARP 269
>POLG_HCVH9 (Q81754) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3010 Score = 30.0 bits (66), Expect = 4.9 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Frame = +3 Query: 369 PLKAKEAVRVLPAPLRWRKMLVAGLT*PTSFPS-ARTSSGCSGAERTSNPSRRPPTLHGC 545 PL A+E R + P ++L+ P + P AR E P PP +HGC Sbjct: 2257 PLVAEEDDREISVPA---EILLKSKKFPPAMPIWARPDYNPPLVEPWKRPDYEPPLVHGC 2313 Query: 546 CAPPATPS 569 PP P+ Sbjct: 2314 PLPPPKPT 2321
>PCNT_HUMAN (O95613) Pericentrin (Pericentrin B) (Kendrin)| Length = 3336 Score = 30.0 bits (66), Expect = 4.9 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +2 Query: 77 RASEKLGVRLERNPAESRLSELGVRQWPKWGCEKSK 184 R E+ G + R AE+R S QW KW +K K Sbjct: 2881 RLKEQEGRKAARRSAEARQSPAAAEQWRKWQRDKEK 2916
>POLG_HCVVP (O92532) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3014 Score = 30.0 bits (66), Expect = 4.9 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 Query: 498 ERTSNPSRRPPTLHGCCAPPATP 566 E +P+ PP +HGC PP+ P Sbjct: 2300 ETWKSPTYEPPVVHGCALPPSGP 2322
>POLG_HCVNZ (Q81258) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3020 Score = 29.6 bits (65), Expect = 6.4 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 5/31 (16%) Frame = +3 Query: 498 ERTSNPSRRPPTLHGCC-----APPATPSRR 575 +R P PPT+HGC APP P RR Sbjct: 2304 DRWKAPDYVPPTVHGCALPPRGAPPVPPPRR 2334
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 29.6 bits (65), Expect = 6.4 Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 6/77 (7%) Frame = +3 Query: 330 PRSPIHLSSPVRGPLKAKEA----VRVLPAPLRWRKMLVAGLT*PTSFPSARTSSGCSGA 497 P +P S P R P+ A P P R AG + PSA T C A Sbjct: 264 PSAPRPSSRPARPPIPAARPPPRRTPGTPRPAAARARAPAGCSPARRTPSAPTDRRCRAA 323 Query: 498 ERTS--NPSRRPPTLHG 542 R S P+ RPP G Sbjct: 324 RRGSPRPPAARPPGRQG 340
>POLG_HCVTR (Q81487) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3022 Score = 29.6 bits (65), Expect = 6.4 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +3 Query: 510 NPSRRPPTLHGCCAPPATPS 569 +P+ PP +HGC PP P+ Sbjct: 2310 DPTYEPPAVHGCALPPTRPA 2329
>BGAL_KLEPN (P06219) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 1034 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 8/42 (19%) Frame = -3 Query: 192 HGNLLFSHPHLGHWRT--------PSSERRDSAGLRSSLTPS 91 H N L +HP WR PSS RR G SSLTP+ Sbjct: 30 HLNRLPAHPVFASWRDELAARDNLPSSRRRQLDGSGSSLTPA 71
>LONH2_THEVO (P58275) Putative protease La homolog type 2 (EC 3.4.21.-)| Length = 495 Score = 29.3 bits (64), Expect = 8.4 Identities = 19/55 (34%), Positives = 27/55 (49%) Frame = +1 Query: 121 RVPPLGARRPPVAQVGVREEQVPVDLLGQGDVLPAAGEGEVYPRVVRPNRSKIPG 285 +V P+ R P A VR ++VP D +L AA P ++ P RS+I G Sbjct: 302 KVFPITGRNPQSAGASVRVDKVPADF-----ILVAACNINDLPYILSPLRSRIVG 351
>HUTG_SALTY (Q8ZQR1) Formimidoylglutamase (EC 3.5.3.8) (Formiminoglutamase)| (Formiminoglutamate hydrolase) Length = 313 Score = 29.3 bits (64), Expect = 8.4 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Frame = +2 Query: 353 FACSRSVESERGR*GFAGA--------SPMAEDAGSR--IDIANLLSLSKDLVGVLRGRK 502 FAC V+ GR G AGA + MA G +D+ N ++ + DL G + + Sbjct: 51 FACDEGVKRNAGRPGAAGAPDALRKALANMASHQGHERLVDLGNWVAPTPDLEGAQQALR 110 Query: 503 DVESLAQASNFARMLRSASH 562 D S + ++ H Sbjct: 111 DAVSRCLRAGMRTLVLGGGH 130 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,859,743 Number of Sequences: 219361 Number of extensions: 1740171 Number of successful extensions: 6010 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5670 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6001 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
