>SCRT2_MOUSE (Q8BTH6) Transcriptional repressor scratch 2 (Scratch homolog 2|
           zinc finger protein)
          Length = 311

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 89  AADDPAIAGRASGRTGGEVGMEGDEAARRGREALSGG-HLCHVCGHQYPNPNPSAKLRRS 265
           A  D A AG A G  GG  G  G+ A R G  A  G  H C  CG  Y   +  ++ +++
Sbjct: 125 AGGDAAGAGDAGGGGGGGGG--GERAGRSGATAGGGHRHACAECGKTYATSSNLSRHKQT 182

Query: 266 HR 271
           HR
Sbjct: 183 HR 184

>AMIB_ECOLI (P26365) N-acetylmuramoyl-L-alanine amidase amiB precursor (EC|
           3.5.1.28)
          Length = 445

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 461 KQNAEHASLNAARIQAITSNYIETGLIPNNSSE 559
           K+  EHASL   R   I S  +ETG I NNS E
Sbjct: 360 KRRPEHASLGVLRSPDIPSVLVETGFISNNSEE 392

>RS11_CHLTR (P47761) 30S ribosomal protein S11|
          Length = 132

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 86  VAADDPAIAGRASGRTGGEVGMEGDEAARRG--REALSGGHLCHVCGHQYPNPNPSAKLR 259
           VAA D A A  +SG    EVG++G  A R    R  +S G +  V   + P P+   + R
Sbjct: 68  VAAQDAAKAAMSSGLKEVEVGLKGTGAGRESAVRALISSGLIVSVIRDETPVPHNGCRPR 127

Query: 260 RSHR 271
           +  R
Sbjct: 128 KRRR 131

>RS11_CHLTA (Q3KLI9) 30S ribosomal protein S11|
          Length = 132

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 86  VAADDPAIAGRASGRTGGEVGMEGDEAARRG--REALSGGHLCHVCGHQYPNPNPSAKLR 259
           VAA D A A  +SG    EVG++G  A R    R  +S G +  V   + P P+   + R
Sbjct: 68  VAAQDAAKAAMSSGLKEVEVGLKGTGAGRESAVRALISSGLIVSVIRDETPVPHNGCRPR 127

Query: 260 RSHR 271
           +  R
Sbjct: 128 KRRR 131

>VASN_MOUSE (Q9CZT5) Vasorin precursor (Protein Slit-like 2)|
          Length = 673

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +2

Query: 62  CVRSHLHVVAADDPAIAGRASGRT---GGEVGME-GDEAARRGREALSGGHLCHVCGHQY 229
           CVR       A D    G  +G     G +  +E G +A   G EALSGG  C V    Y
Sbjct: 599 CVRRARATSTAQDKGQVGPGTGPLELEGVKAPLEPGSKATEGGGEALSGGPECEVPLMGY 658

Query: 230 PNPNPSAKLRRSH 268
           P P+    L   H
Sbjct: 659 PGPSLQGVLPAKH 671

>SCRT2_HUMAN (Q9NQ03) Transcriptional repressor scratch 2 (Scratch homolog 2|
           zinc finger protein)
          Length = 307

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
 Frame = +2

Query: 116 RASGRTGGEVGMEGDEAARRGREALSGG-------HLCHVCGHQYPNPNPSAKLRRSHR 271
           R  G  GG+ G  GD     GR   +G        H C  CG  Y   +  ++ +++HR
Sbjct: 120 RRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHR 178

>IF2_XANAC (Q8PJ55) Translation initiation factor IF-2|
          Length = 904

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 35  GQSEQHSVRCVRSHLHVVAADDPA---IAGRASGRTGGEVGMEGDEAARRGREALSGGH 202
           G  +  + +     LH+ AAD      + G+ +GR G      G+++ R G +A SG H
Sbjct: 252 GVEDDDATKRFAGQLHLSAADRARRSNVRGKPTGRPGSSSSRRGNDSGRGGSQANSGPH 310

>SCRT1_MOUSE (Q99M85) Transcriptional repressor scratch 1 (Scratch homolog 1|
           zinc finger protein) (Scratch 1) (SCRT) (mScrt)
          Length = 348

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = +2

Query: 101 PAIAGRASG---RTGGEVGMEGDEAARRGREALSGGHLCHVCGHQYPNPNPSAKLRRSHR 271
           P   G  SG   R G  VG   +  A  G     G H C  CG  Y   +  ++ +++HR
Sbjct: 155 PGTRGSGSGSASRGGTRVGAGTEARAGSGATGAGGRHACGECGKTYATSSNLSRHKQTHR 214

>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)|
          Length = 1992

 Score = 25.0 bits (53), Expect(2) = 2.9
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +3

Query: 366 DQETGRSPAMARRAEALRRPDLPTEASIRRRTSRTQNMLLSMLLEFKPSPVTT 524
           D     SP+ A++ +AL+  + P+E +     S+ +++     L+   SP T+
Sbjct: 79  DYNRTNSPSSAKKPKALQHTESPSETNKPHSKSKKRHLDQEQQLKSAQSPSTS 131



 Score = 24.3 bits (51), Expect(2) = 2.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 230 PNPNPSAKLRRSHRRNCRKVTPAAEEEGAGPRNAADGRLVL 352
           PN NP   LRRS +RN     P  +++  G R+ +    V+
Sbjct: 5   PNNNPGGSLRRS-QRNTAGAQP--QDDSIGGRSCSSSSAVI 42

>XYLT1_MOUSE (Q811B1) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)|
           (Peptide O-xylosyltransferase 1)
          Length = 953

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
 Frame = +2

Query: 35  GQSEQHSVRCVRSHLHVVAADDPAIAGRASGRTGGEVGMEGDEAARRGREALSGGHLCHV 214
           G +EQ      R     +AA  PA  G   GR GG     G     R ++  S G L   
Sbjct: 53  GAAEQQQPAAPRRERRDLAAHLPAARGGPGGRAGGGGARGGGPGGARAQQPASRGALASR 112

Query: 215 CGHQYPNPNPSAKLRR-----SHRRNCRKVTPAAEEEGAGPRN 328
              + P P+P   L       SHR    KV   +  E + P++
Sbjct: 113 A--RDPQPSPLITLETQDGYFSHRPK-EKVRTDSNNENSVPKD 152

>IF2_XANC5 (Q3BRP5) Translation initiation factor IF-2|
          Length = 904

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +2

Query: 35  GQSEQHSVRCVRSHLHVVAADDPA---IAGRASGRTGGEVGMEGDEAARRGREALSGGH 202
           G  +  + +     LH+ AAD      + G+ +GR G      G++  R G +A SG H
Sbjct: 252 GVEDDDATKRFAGQLHLSAADRARRSNVRGKPTGRPGSSSSRRGNDNGRGGSQANSGPH 310

>ZN696_HUMAN (Q9H7X3) Zinc finger protein 696|
          Length = 374

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
 Frame = +2

Query: 122 SGRTGGEVGMEGDEAARRGREALSGGHL------CHVCGHQYPNPNPSAKLRRSH 268
           S +TGG+ G+E D     G  A  GG        C  CG  +   + +AK R  H
Sbjct: 93  SEKTGGQSGLESDVPPNAGPGAEGGGSWKGRPFPCGACGRSFKCSSDAAKHRSIH 147

>CCD45_RAT (Q5XI03) Coiled-coil domain-containing protein 45|
          Length = 821

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +2

Query: 104 AIAGRASGRTGGEVGMEGDEAARRGREALSGGHLCHVCGHQYPNPNPSAKLRRSHRRNCR 283
           A+  RA+G   G+ G  GDE A    E +   H   V  +    P P   + R       
Sbjct: 385 ALGDRATGEAHGKDGGAGDEEAHSANEEMLSQHSDSVMEYGPRKPRPGFSMHRKAPYRSH 444

Query: 284 KVTPAA 301
            ++P++
Sbjct: 445 SLSPSS 450

>ZN206_HUMAN (Q96SZ4) Zinc finger protein 206 (Zinc finger and SCAN|
           domain-containing protein 10)
          Length = 725

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 200 HLCHVCGHQYPNPNPSAKLRRSH 268
           H C  CGH++ N +  A+ RRSH
Sbjct: 607 HACDTCGHRFRNSSNLARHRRSH 629

>AMIB_SALTY (P26366) N-acetylmuramoyl-L-alanine amidase amiB precursor (EC|
           3.5.1.28)
          Length = 439

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 461 KQNAEHASLNAARIQAITSNYIETGLIPNNSSE 559
           K+  EHASL   R   I S  +ETG I N+  E
Sbjct: 354 KRRPEHASLGVLRSPDIPSILVETGFISNHGEE 386

>ZN306_HUMAN (Q9BRR0) Zinc finger protein 306 (Zinc finger protein 47 homolog)|
           (Zfp-47) (Zf47) (Zinc finger and SCAN domain-containing
           protein 13)
          Length = 538

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 131 TGGEVGMEGDEAARRGREALSGG-HLCHVCGHQYPNPNPSAKLRRSH 268
           T  E G +     R+ + A  G  H+CH CG  +   +  +K RR H
Sbjct: 290 TCAEAGEQEGRLQRKQKNATGGRRHICHECGKSFAQSSGLSKHRRIH 336

>SCRT1_HUMAN (Q9BWW7) Transcriptional repressor scratch 1 (Scratch homolog 1|
           zinc finger protein) (Scratch 1) (SCRT) (hScrt)
          Length = 348

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 125 GRTGGEVGMEGDEAARRGREALSGGHLCHVCGHQYPNPNPSAKLRRSHR 271
           GR G   G   +  A  G     G H C  CG  Y   +  ++ +++HR
Sbjct: 166 GRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHKQTHR 214

>MKRN2_SERQU (Q9DD48) Makorin-2 (Zinc finger protein YGHLC3HC4)|
          Length = 423

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 197 GHLCHVCGHQYPNPNPSAKLRRSHRRNCRKVTPAAEEEGAGPRNAAD 337
           G LC VCG Q  +P+ S + RR+H + C     A  E+    + + D
Sbjct: 187 GDLCEVCGLQVLHPHDSEQ-RRAHEKMCLAAFEADMEKAFAAQLSQD 232

>BUR1_NEUCR (Q871M9) Serine/threonine-protein kinase bur-1 (EC 2.7.11.22) (EC|
           2.7.11.23)
          Length = 545

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
 Frame = +2

Query: 89  AADDPAIAGRASGRTGGEVGMEGDEAARRGREALSGGHLCHVCGHQYP---NPNPSAKLR 259
           AA  PA  G   GR G  V  +G +    GR+   GG      G +YP      P    R
Sbjct: 358 AALPPAPKGGTVGR-GAVVNSQGPDTGFSGRDGYGGGGRNGANGGRYPPYHRGPPPGDER 416

Query: 260 RSHRRNCRKVTP----AAEEEGAGPRNAADG 340
                + R + P     A+  G+GP +  DG
Sbjct: 417 VPSWHSARGLPPRPPMPADYHGSGPMDHTDG 447

>WRK69_ARATH (Q93WV5) Probable WRKY transcription factor 69 (WRKY DNA-binding|
           protein 69)
          Length = 271

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = +2

Query: 128 RTGGEVGMEGDEAARRGREALSGGHLCHVCGHQYPNPNPSAKLRRSHRRNCRKVTPAAEE 307
           R     G    +   R R   S   + + C H +P P+ SA  +  HR +    T   EE
Sbjct: 94  RCSSSKGCPARKQVERSRVDPSKLMITYACDHNHPFPSSSANTKSHHRSSVVLKTAKKEE 153

Query: 308 E 310
           E
Sbjct: 154 E 154


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,996,345
Number of Sequences: 219361
Number of extensions: 958663
Number of successful extensions: 3739
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3737
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)