Clone Name | bart41d02 |
---|---|
Clone Library Name | barley_pub |
>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Homozygously deleted in neuroblastoma 1) Length = 1302 Score = 38.1 bits (87), Expect = 0.017 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 185 ESAQKP*PA--AQLPMAGNSNPSPSAGGD---VPTPALPPVRLAAGQAATIQPSSPRY 343 ES+ P P+ + +P+ G S SPS VP+ L P A+G AA QPSSPRY Sbjct: 273 ESSPAPTPSFWSSVPVMGPSLASPSRAASQLAVPSTPLSPHSAASGTAAGSQPSSPRY 330
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 33.5 bits (75), Expect = 0.42 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Frame = +3 Query: 3 NHTARLQAQGAARPFLPSFHPPA--YSLDPSISNQNLQSASPHPTPPRIKSATEKSRNKL 176 +H R G + P P PP Y PS+ N Q +SP P P +++ T S++ Sbjct: 1547 SHGTRQPPYGPSAPVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPF 1606 Query: 177 ---GEKSQRKNP 203 G K Q+ P Sbjct: 1607 LHSGMKMQKAGP 1618
>SAM68_RAT (Q91V33) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (p21 Ras GTPase-activating protein-associated p62) (GAP-associated tyrosine phosphoprotein p62) (Src-associated in mitosis 68 kDa protein) (Sam68) (p68) Length = 443 Score = 32.7 bits (73), Expect = 0.71 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Frame = +2 Query: 206 PAAQLP-MAGNSNPSPSAG--GDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDA 373 PA Q P + SNP P A G PTP LPP +A AA ++P + +Y +A KD+ Sbjct: 59 PATQPPPLLPPSNPGPDATVVGSAPTPLLPP---SATAAAKMEPEN-KYLPELMAEKDS 113
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 32.3 bits (72), Expect = 0.93 Identities = 19/43 (44%), Positives = 21/43 (48%) Frame = +3 Query: 6 HTARLQAQGAARPFLPSFHPPAYSLDPSISNQNLQSASPHPTP 134 HT QA P LPS HPP L P + + SA PHP P Sbjct: 797 HTHIQQAPTLHPPRLPSPHPP---LQPMTAPPSQSSAQPHPQP 836
>YFK5_SCHPO (P87132) Hypothetical protein C167.05 in chromosome I| Length = 601 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +2 Query: 371 ASSHHRRIA--IAVDLSDESAFAVRWAVQNYLRPGDAVVLLHV 493 ASS R + +DLS ES A WAV LR GD ++++ V Sbjct: 424 ASSSKRNCTYFLTLDLSSESLHAAEWAVGILLRNGDTLIIVDV 466
>FMNL_MOUSE (Q9JL26) Formin-like 1 protein (Formin-related protein)| Length = 1094 Score = 27.3 bits (59), Expect(2) = 1.6 Identities = 16/55 (29%), Positives = 21/55 (38%) Frame = +2 Query: 173 TRREESAQKP*PAAQLPMAGNSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSP 337 +++E P A LP P+P GD+P P PP G P P Sbjct: 553 SQQEAPPSAPPLAPPLPGCAEPPPAPPLPGDLPPPPPPPPLGTDGPVPPPPPPPP 607 Score = 22.7 bits (47), Expect(2) = 1.6 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = +3 Query: 33 AARPFLPSFHPPAYSLD-PSISNQNLQSASPHPTPP 137 AA P P S D PS + ++ASP P PP Sbjct: 507 AATPSGDDAQAPRVSTDSPSTAESIPEAASPPPPPP 542
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/43 (41%), Positives = 20/43 (46%) Frame = +3 Query: 6 HTARLQAQGAARPFLPSFHPPAYSLDPSISNQNLQSASPHPTP 134 HT Q P LPS HPP L P + + SA PHP P Sbjct: 796 HTLIQQTPTLHPPRLPSPHPP---LQPMTAPPSQNSAQPHPQP 835
>POP1_HUMAN (Q99575) Ribonucleases P/MRP protein subunit POP1 (EC 3.1.26.5)| (hPOP1) Length = 1024 Score = 30.8 bits (68), Expect = 2.7 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +3 Query: 114 ASPHPTPPRIKSATEKSRNKLGEKSQRKNPSQ 209 A P PTP + KS TE K+G+K +RK+ + Sbjct: 360 ADPLPTPSQEKSQTELPDEKIGKKRKRKDDGE 391
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 30.8 bits (68), Expect = 2.7 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Frame = +2 Query: 179 REESAQKP*PAAQLPMAGNSNPSPSAGGDVPTP-ALPPVRLAAGQAATIQPSSPR 340 RE A +P P P P P G P P A P R AA Q +P PR Sbjct: 191 RERPAARPGPGGPRPGPAQGGPRPGPGQGAPRPGATPGPRPAAAQGGP-RPGGPR 244
>Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 intergenic| region Length = 224 Score = 30.8 bits (68), Expect = 2.7 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Frame = +2 Query: 206 PAAQLPMAGNSNPSPSAGGDVPTPALPPVRLAAGQAATIQPS-----SPRYFFSSLAGKD 370 P + +P +P PS PTP+ PP + + PS P Y+ S++ + Sbjct: 94 PPSPIPPTPTPSPPPSPIPPTPTPSPPPSPIPPTPTPSPPPSPSPLGEPMYYPSNIDTNE 153 Query: 371 ASSHHRRIAIAVDLSDESAFAVRW 442 A + R A D + + +AV W Sbjct: 154 ALINFLRPLCATDRT-RATYAVPW 176
>SECD_MYCTU (Q50634) Protein-export membrane protein secD| Length = 573 Score = 30.4 bits (67), Expect = 3.5 Identities = 19/60 (31%), Positives = 24/60 (40%) Frame = +3 Query: 30 GAARPFLPSFHPPAYSLDPSISNQNLQSASPHPTPPRIKSATEKSRNKLGEKSQRKNPSQ 209 GA P P Y DP+ S ASP P PP AT+ ++ +Q K Q Sbjct: 157 GAPASPQPGAQPRPYPQDPAPSPNPTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQ 216
>GBF1_HUMAN (Q92538) Golgi-specific brefeldin A-resistance guanine nucleotide| exchange factor 1 (BFA-resistant GEF 1) Length = 1859 Score = 30.0 bits (66), Expect = 4.6 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Frame = +2 Query: 206 PAAQLPMAGNSNPSPSAGGDVPTPALPP---VRLAAGQAATIQPSSPRYFFSSLAGKDAS 376 P Q P+A S SA GD TP PP + G +P SPR SS G + Sbjct: 1730 PQGQKPLA--SAHLTSAAGDTRTPGHPPPPEIPSELGACDFEKPESPRAASSSSPGSPVA 1787 Query: 377 SHHRRIAIAVD 409 S R++ D Sbjct: 1788 SSPSRLSPTPD 1798
>GFC1_HUMAN (P63117) HERV-F(c)1_Xq21.33 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein] Length = 469 Score = 30.0 bits (66), Expect = 4.6 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +2 Query: 182 EESAQKP*PAA-QLPMAGNSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSP 337 E A P PAA P G+S P+P+A P P PP A A+ + P SP Sbjct: 126 EALALPPLPAALPPPYPGSSGPTPTA---PPLPPTPPSSPANPPASALPPPSP 175
>SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 464 Score = 25.4 bits (54), Expect(2) = 4.7 Identities = 11/34 (32%), Positives = 15/34 (44%) Frame = +3 Query: 42 PFLPSFHPPAYSLDPSISNQNLQSASPHPTPPRI 143 P P HPPA + P S + + HP P + Sbjct: 310 PPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGV 343 Score = 23.1 bits (48), Expect(2) = 4.7 Identities = 13/46 (28%), Positives = 17/46 (36%) Frame = +2 Query: 200 P*PAAQLPMAGNSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSP 337 P P P G P+P P PP QA + P++P Sbjct: 339 PAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAP 384
>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 487 Score = 29.6 bits (65), Expect = 6.0 Identities = 21/60 (35%), Positives = 26/60 (43%) Frame = +2 Query: 158 EIPE*TRREESAQKP*PAAQLPMAGNSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSP 337 EIP +R S P P LP G S P P + P PPVR G++ + P P Sbjct: 314 EIPRLPQRNLSLTSPTPP--LPSPGRSGPLPPPPTERPP---PPVRDPPGRSGPLPPPPP 368
>DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire)| Length = 877 Score = 29.6 bits (65), Expect = 6.0 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Frame = +2 Query: 188 SAQKP*PAAQLPMAGNSNPSPSA--GGDVPTPALPP-VRLAAGQAATIQPSSPRYFFSSL 358 S +P PA G + P P GG +P P LP V A G A Q + RY S+ Sbjct: 793 STGRPAPAIPNRPGGGAPPLPGGRPGGSLPPPMLPSRVSGAVGGAIVQQSGANRYVPESM 852 Query: 359 AGK 367 G+ Sbjct: 853 RGQ 855
>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1687 Score = 29.6 bits (65), Expect = 6.0 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -1 Query: 372 ASLPASEEKK*RGEEGWIVAACPAARRTGGSAGVGTSPPADGEGLELPAMGSW 214 A+ PA+ ++ GE G V P++ G G +PPAD L LP G+W Sbjct: 230 AAAPAASDQTLDGEHGRDVEPPPSSGTVGAVRGPARAPPAD---LPLPG-GAW 278
>PHOSP_PI3B (P06163) Phosphoprotein (Protein P)| Length = 596 Score = 29.6 bits (65), Expect = 6.0 Identities = 16/59 (27%), Positives = 27/59 (45%) Frame = -1 Query: 546 TETGMEPQSAP*RTEVGRTWRSTTASPGRR*FCTAQRTAKADSSERSTAMAMRRWWEEA 370 +E+G +S +++ + +S T PGR + +T K D ER R+ E A Sbjct: 300 SESGSRTESTSQNSQIPTSGKSNTVGPGRTTLESRIKTQKTDGKEREDTEESTRFTERA 358
>TATB_PSEAE (Q9HUB4) Sec-independent protein translocase protein tatB homolog| Length = 141 Score = 29.6 bits (65), Expect = 6.0 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +2 Query: 173 TRREESAQKP*PAAQLPMAGNSNPSPSAGGDVPTPALPPVRLAA--GQAATIQPSSP 337 T + + P PAA+ P P P++ TPA+PP AA AA+ PS P Sbjct: 83 TGQNPPQETPPPAAESPAPSVPTPPPTS-----TPAVPPADAAAPPAVAASTPPSPP 134
>YCX1_CHLRE (P05723) Hypothetical 12.2 kDa protein in 16S rRNA region| Length = 111 Score = 29.6 bits (65), Expect = 6.0 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Frame = +2 Query: 239 NPSPSA--GGDVPTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDASSHHRRIAIAVDL 412 NP P A G +P P +PPV T PS PR F+S A K S ++ + Sbjct: 48 NPIPLAVMRGGIPLPGMPPV-------PTATPSLPRSGFTSSAKKIKESRKQKSTALQAV 100 Query: 413 SDE 421 D+ Sbjct: 101 KDQ 103
>PDC6I_RAT (Q9QZA2) Programmed cell death 6-interacting protein| (ALG-2-interacting protein 1) (Fragment) Length = 401 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +3 Query: 18 LQAQGAARPFLPSFHPPAYSLDPSISNQNLQSASPHPTPP 137 LQ A P PS PPAY P+ + + +P PP Sbjct: 242 LQQSIAREPSAPSIPPPAYQSSPAGGHATAPTPAPRTMPP 281
>ITSN1_HUMAN (Q15811) Intersectin-1 (SH3 domain-containing protein 1A) (SH3P17)| Length = 1721 Score = 29.6 bits (65), Expect = 6.0 Identities = 19/47 (40%), Positives = 24/47 (51%) Frame = +2 Query: 188 SAQKP*PAAQLPMAGNSNPSPSAGGDVPTPALPPVRLAAGQAATIQP 328 +A P P +P+ G S P+ VPT A+PP LA G IQP Sbjct: 127 TAVAPVPMGSIPVVGMS---PTLVSSVPTAAVPP--LANGAPPVIQP 168
>MECT1_HUMAN (Q6UUV9) Mucoepidermoid carcinoma translocated protein 1| (Transducer of regulated cAMP response element-binding protein 1) (Transducer of CREB protein 1) Length = 634 Score = 29.6 bits (65), Expect = 6.0 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = +2 Query: 212 AQLPMAGNSNPS-PSAGGDVPT-PALPPVRLAAGQAATIQPSSP 337 + LP + NP PS G D+ + PAL R +AG A P+SP Sbjct: 419 SSLPQSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQSPTSP 462
>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting| gene 1) (Rig-1) Length = 1366 Score = 25.4 bits (54), Expect(2) = 7.0 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = +2 Query: 260 GDVPTPALPPV----RLAAGQAATIQPSSPR 340 GD+P P LPP +LA G A + Q PR Sbjct: 1265 GDLPPPPLPPPELRDKLALGSAGSRQHVFPR 1295 Score = 22.3 bits (46), Expect(2) = 7.0 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +3 Query: 114 ASPHPTPPRIKSATEKSRNKLGE 182 ASP P P SA ++R GE Sbjct: 1215 ASPSPVPSTASSAPGRTRQVTGE 1237
>ERF2_SCHPO (O74718) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) Length = 662 Score = 26.6 bits (57), Expect(2) = 7.5 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 9/62 (14%) Frame = +3 Query: 36 ARPFLPSFHPPAYSLDPSI---------SNQNLQSASPHPTPPRIKSATEKSRNKLGEKS 188 A PF+PSF P + +I + Q S SPHPT + + + N + E Sbjct: 35 AAPFIPSFQRPGFVPVNNIAGGYPYAQYTGQGQNSNSPHPTKSYQQYYQKPTGNTVDEDK 94 Query: 189 QR 194 R Sbjct: 95 SR 96 Score = 21.2 bits (43), Expect(2) = 7.5 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = +2 Query: 269 PTPALPPVRLAAGQAATIQPSSPRYFFSSLAGKDASSHHRRIAIAVDLSDES 424 P PA+P ++ + T P S + SL G A + + A A E+ Sbjct: 109 PKPAIPKGKVLSLGGNTSAPKSTKPISISLGGTKAPTTTKPAAPAAQSKTET 160
>SWC4_NEUCR (Q870Q1) SWR1-complex protein 4| Length = 771 Score = 29.3 bits (64), Expect = 7.9 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = +2 Query: 224 MAGNSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSPR---YFFSSLAGKDASSHH 385 MA + P+A T ALPP A A + P++ R SS AG A+ HH Sbjct: 336 MAPENGVPPAAAAAAATAALPPAAAAVAAAPEVPPAASRRESLAASSTAG--ANDHH 390
>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT| transcription complex cytosolic component) (NF-ATc1) (NF-ATc) Length = 943 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = +2 Query: 206 PAAQLPMAGNSNPSPSAGGDVPTPA-LPPVRLAAGQAATIQPSSPRYFFSS 355 PA LP A ++ P+P TP +PP +G A + YF SS Sbjct: 54 PALPLPTAHSTLPAPCHNLQTSTPGIIPPADHPSGYGAALDGGPAGYFLSS 104
>NEDD4_DROME (Q9VVI3) E3 ubiquitin-protein ligase Nedd-4 (EC 6.3.2.-) (DNedd4)| Length = 1007 Score = 29.3 bits (64), Expect = 7.9 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 7/71 (9%) Frame = +2 Query: 209 AAQLPMAGNSNPSPSAGGDVPTPALPPVRLA---AGQAATIQP----SSPRYFFSSLAGK 367 AA LP+ +S S AGGDVP P PP R A AGQ T Q +PR +++ Sbjct: 11 AAALPVPSSS--SSVAGGDVPRP--PPRRRAASVAGQQQTRQEFGNGYTPRRSLAAVNDS 66 Query: 368 DASSHHRRIAI 400 S H R + + Sbjct: 67 GDSCHLRIVVL 77
>POLS_WEEV (P13897) Structural polyprotein (p130) [Contains: Capsid protein| (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3 protein (Spike glycoprotein E3); E2 envelope glycoprotein (Spike glycoprotein E2); 6K protein; E1 envelope glycoprotein (Spike gl Length = 1236 Score = 29.3 bits (64), Expect = 7.9 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Frame = +3 Query: 39 RPFLPSFHPPAYSLDPSISNQNLQSASPHPTP----------PRIKSATEKSRNKLGEKS 188 RPF P L SI+N + SP+P P P+ K K + + +K+ Sbjct: 31 RPFRPPLAAQIEDLRRSIANLTFKQRSPNPPPGPPPKKKKSAPKPKPTQPKKKKQQAKKT 90 Query: 189 QRK 197 +RK Sbjct: 91 KRK 93
>MP2K7_HUMAN (O14733) Dual specificity mitogen-activated protein kinase kinase 7| (EC 2.7.12.2) (MAP kinase kinase 7) (MAPKK 7) (MAPK/ERK kinase 7) (JNK-activating kinase 2) (c-Jun N-terminal kinase kinase 2) (JNK kinase 2) (JNKK 2) Length = 419 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Frame = +2 Query: 188 SAQKP*PAAQLPMA---GNSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSS 334 S Q+P P QLP+A G+ +PS + PTP P + + P S Sbjct: 35 SPQRPRPTLQLPLANDGGSRSPSSESSPQHPTPPARPRHMLGLPSTLFTPRS 86
>BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain 2A (Transcription| termination factor I-interacting protein 5) (TTF-I-interacting protein 5) (Tip5) (hWALp3) Length = 1878 Score = 29.3 bits (64), Expect = 7.9 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 12/79 (15%) Frame = +2 Query: 164 PE*TRREESAQKP*P-------AAQLPMAGNSNPSPSAGGDVPTPALPPVRLAA----GQ 310 PE +E+ P P +AQ+P P P+ D PTP+ P +LA+ + Sbjct: 1278 PEEPEPDEAESSPDPQALWFNISAQMPCNAAPTPPPAVSEDQPTPS--PQQLASSKPMNR 1335 Query: 311 AATIQPSSPRYFFSS-LAG 364 + P SP F S+ LAG Sbjct: 1336 PSAANPCSPVQFSSTPLAG 1354
>IMPX_YEAST (P32351) Sugar utilization regulatory protein IMP2| Length = 346 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = +2 Query: 359 AGKDASSHHRRIAIAVDLSDESAFAVRWAVQNYLRPGDAVVLLHVRPT 502 AG +A + R + DLS ES +A+ + + + GD V ++H P+ Sbjct: 202 AGAEAGNQ-RSFILYTDLSSESTYALTYLMGAAVNQGDTVYIVHWEPS 248
>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 475 Score = 25.0 bits (53), Expect(2) = 9.9 Identities = 12/38 (31%), Positives = 16/38 (42%) Frame = +3 Query: 42 PFLPSFHPPAYSLDPSISNQNLQSASPHPTPPRIKSAT 155 P P HPPA + P S + + HP P + T Sbjct: 272 PPAPGVHPPAPVVHPPTSGVHPPAPGVHPPAPVVHPPT 309 Score = 22.3 bits (46), Expect(2) = 9.9 Identities = 13/46 (28%), Positives = 16/46 (34%) Frame = +2 Query: 200 P*PAAQLPMAGNSNPSPSAGGDVPTPALPPVRLAAGQAATIQPSSP 337 P P P G P+P P PP QA + P +P Sbjct: 350 PTPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPPAP 395 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.131 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,326,652 Number of Sequences: 219361 Number of extensions: 1037458 Number of successful extensions: 6522 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 5593 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6471 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)