ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart41d01 |
|---|---|
| Clone Library Name | barley_pub |
>ESR1_ORENI (Q9YH33) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 585 Score = 33.5 bits (75), Expect = 0.50 Identities = 22/51 (43%), Positives = 27/51 (52%) Frame = +3 Query: 57 SSGGGRHDDEQRLPSGAVAPLRGWKLLQRVHEALQGPRRHTASRAPLGPAV 209 SSGGG DDE +G+ + +G HE+ PRR SRAP GP V Sbjct: 530 SSGGGGGDDEGASSAGSSSGPQG------SHES---PRRENLSRAPTGPGV 571
>YO107_YEAST (Q12239) Uncharacterized protein YOL107W| Length = 342 Score = 33.1 bits (74), Expect = 0.66 Identities = 17/60 (28%), Positives = 34/60 (56%) Frame = +1 Query: 370 TKELSKFVFVVNFSTSMCVFITAIAVYYVTQQESYLYTPLSGFYGVLSGLLVGIKQLMPD 549 +KE+ KF+ V+ T++ + + + V + + + L PL G Y +L G + +QL+P+ Sbjct: 116 SKEMFKFIIVLGSLTNVLIIMLTLLVSFFSNKVR-LDIPLDGNYTILIGFPIIYRQLLPE 174
>CLPP1_NOCFA (Q5Z0M4) ATP-dependent Clp protease proteolytic subunit 1 (EC| 3.4.21.92) (Endopeptidase Clp 1) Length = 197 Score = 33.1 bits (74), Expect = 0.66 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Frame = +1 Query: 430 ITAIAVYYVTQQESYLYTPL-SGFYGVLSGLLVGIKQLMPDQELNLFVLKIKGKWIPSLI 606 IT I + + ++ YL TP+ SG L L+ ++ PDQE+N F + +G +PS++ Sbjct: 20 ITDIYSHLLAERIVYLGTPIDSGVANALIAQLLHLESESPDQEIN-FYINCEGGDLPSML 78 Query: 607 AL 612 A+ Sbjct: 79 AV 80
>KHL15_HUMAN (Q96M94) Kelch-like protein 15| Length = 604 Score = 32.0 bits (71), Expect = 1.5 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 339 IREIIRAFMGHKGVIKVRFCCQLLNFNVCLHNC 437 + EI++A M + + V+FCC L +CL NC Sbjct: 101 VHEILQAAMYVQLIEVVKFCCSFLLAKICLENC 133
>KHL15_CHICK (Q5ZJU2) Kelch-like protein 15| Length = 488 Score = 32.0 bits (71), Expect = 1.5 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 339 IREIIRAFMGHKGVIKVRFCCQLLNFNVCLHNC 437 + EI++A M + + V+FCC L +CL NC Sbjct: 101 VHEILQAAMYVQLIEVVKFCCSFLLAKICLENC 133
>ESR1_OREAU (P50240) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 583 Score = 31.2 bits (69), Expect = 2.5 Identities = 21/51 (41%), Positives = 26/51 (50%) Frame = +3 Query: 57 SSGGGRHDDEQRLPSGAVAPLRGWKLLQRVHEALQGPRRHTASRAPLGPAV 209 S GGG DDE +G+ + +G HE+ PRR SRAP GP V Sbjct: 528 SRGGGGGDDEGASSAGSSSGPQG------SHES---PRRENLSRAPKGPGV 569
>KHL15_BRARE (Q6DEL7) Kelch-like protein 15| Length = 604 Score = 30.8 bits (68), Expect = 3.3 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 Query: 339 IREIIRAFMGHKGVIKVRFCCQLLNFNVCLHNC 437 ++EI++A M + V FCC L +CL NC Sbjct: 101 VQEILQAAMYVQLTEAVEFCCSFLLAKICLENC 133
>SYH_RALSO (Q8Y029) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 432 Score = 30.4 bits (67), Expect = 4.2 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Frame = +3 Query: 9 LTVYALRPQRAPDRRISSGGGRHDDEQRLPSGAVAPLRGWKL-LQRVHEALQGPRRHTAS 185 LTV+ + + +GGGR+D G AP GW + ++R+ E L R + Sbjct: 265 LTVFEWTTDKLGAQGTVAGGGRYDPLIEQIGGKPAPACGWAMGVERIIELL---REENLA 321 Query: 186 RAPLGPAVPVSHQ 224 P G V + HQ Sbjct: 322 PEPQGSDVYIVHQ 334
>MATK_LENER (Q8MCR5) Maturase K (Intron maturase)| Length = 507 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = +3 Query: 324 NWSSFIREIIRAFMGHKGVIKVRFCCQLLNFNVCLHNCYCCVLCNTTRELPLHS 485 NW+SFI + + I RF L NF VC + L N + LPL S Sbjct: 183 NWNSFITTKNKKSISTFSKINPRFFLFLYNFYVCEYESIFVFLRNQSSHLPLKS 236
>MATK_LENCU (Q8MCR6) Maturase K (Intron maturase)| Length = 507 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = +3 Query: 324 NWSSFIREIIRAFMGHKGVIKVRFCCQLLNFNVCLHNCYCCVLCNTTRELPLHS 485 NW+SFI + + I RF L NF VC + L N + LPL S Sbjct: 183 NWNSFITTKKKKSISTFSKINPRFFLFLYNFYVCEYESIFVFLRNQSSHLPLKS 236
>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)| Length = 1669 Score = 29.6 bits (65), Expect = 7.2 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 11/98 (11%) Frame = +3 Query: 6 LLTVYALRPQRAPDR--------RISSGGGRHDDEQRLPSGAVAPLRGWKLLQRVHEALQ 161 +LT+ L P P ++ +G GR RLP GAV R +++ Q V +Q Sbjct: 1206 VLTMKTLPPSGVPTTIAQQRLQPKMPTGKGRKATSNRLPPGAVNLERSYQICQAV---IQ 1262 Query: 162 GPRRHTASRAPLGPAVPVSHQ---LSRTYPSKDNPFRL 266 +A L P + +Q + T P+ NP L Sbjct: 1263 NSPNRENLKAQLRPPAAILNQHQPTTTTAPAPINPVTL 1300
>P2RX7_MOUSE (Q9Z1M0) P2X purinoceptor 7 (ATP receptor) (P2X7) (Purinergic| receptor) (P2Z receptor) Length = 595 Score = 29.3 bits (64), Expect = 9.5 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -3 Query: 127 HPRRGATAPEGRRCSSSWRPPPDEIRRSGARC 32 +PRRGA RRC W P + ++G RC Sbjct: 122 YPRRGAQCSSDRRCKKGWMDPQSKGIQTG-RC 152
>DCYD_SALTY (Q8ZNT7) D-cysteine desulfhydrase (EC 4.4.1.15)| Length = 327 Score = 29.3 bits (64), Expect = 9.5 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +1 Query: 490 SGFYGVLSGLLVGIKQLMPDQEL-NLFVLKIKGKWIPSLIAL 612 SG G +GL VG++ LMPD EL + V + + P +IAL Sbjct: 192 SGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIAL 233
>DCYD_SALTI (Q8Z5S9) D-cysteine desulfhydrase (EC 4.4.1.15)| Length = 327 Score = 29.3 bits (64), Expect = 9.5 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +1 Query: 490 SGFYGVLSGLLVGIKQLMPDQEL-NLFVLKIKGKWIPSLIAL 612 SG G +GL VG++ LMPD EL + V + + P +IAL Sbjct: 192 SGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIAL 233
>NODL_RHIME (P28266) Nodulation protein L (EC 2.3.1.-)| Length = 183 Score = 29.3 bits (64), Expect = 9.5 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Frame = +3 Query: 282 WLCRANNSRGDYQHNWSSFIREIIRAFMGHKGVIKVRFCCQL-LNFNVCLH---NCYCCV 449 WL R N++ GD W F+RE + +G VI+ F C N ++ H N C + Sbjct: 32 WLKRYNSTLGDSAEQWHLFLREGL-GEVGPGAVIRPPFHCDYGFNISIGAHAYMNFNCVI 90 Query: 450 L 452 L Sbjct: 91 L 91
>DCYD_YERPE (Q8ZF73) D-cysteine desulfhydrase (EC 4.4.1.15)| Length = 330 Score = 29.3 bits (64), Expect = 9.5 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = +1 Query: 490 SGFYGVLSGLLVGIKQLMPDQEL 558 SG G +GL VG++QL+PD EL Sbjct: 194 SGSAGTHAGLAVGLQQLLPDAEL 216
>PURL_CORGL (Q8NMI5) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 762 Score = 29.3 bits (64), Expect = 9.5 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +1 Query: 439 IAVYYVTQQESYLYTPLSGFYGVLSGLLVGIKQLMPDQELNLFVL 573 ++ Y T E L TP+ G GVL + I ++P ++ +L++L Sbjct: 552 VSFYNQTGDEPILPTPVVGVLGVLDNVEQSIGNVLPSEDNDLYLL 596
>DNAA_MYCTU (P49993) Chromosomal replication initiator protein dnaA| Length = 507 Score = 29.3 bits (64), Expect = 9.5 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Frame = +3 Query: 234 TYPSKDNPFRLEPD----NCWLCRANNSRGDYQHNWSSFIRE 347 T P +NP PD N + + +RGD QH+W S+ E Sbjct: 112 TVPPSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTE 153
>DNAA_MYCBO (P49991) Chromosomal replication initiator protein dnaA| Length = 507 Score = 29.3 bits (64), Expect = 9.5 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Frame = +3 Query: 234 TYPSKDNPFRLEPD----NCWLCRANNSRGDYQHNWSSFIRE 347 T P +NP PD N + + +RGD QH+W S+ E Sbjct: 112 TVPPSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTE 153 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,136,235 Number of Sequences: 219361 Number of extensions: 1696956 Number of successful extensions: 5331 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5326 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
