Clone Name | bart41c10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK101913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071H09, full insert sequence Length = 1494 Score = 281 bits (142), Expect = 1e-72 Identities = 292/342 (85%) Strand = Plus / Plus Query: 131 tgggcattcgccttcggcctactgggcaacatcatctcttttacgagcctcctcgccccg 190 ||||| |||||||| || || || |||||||||||||| || | || | ||| ||||| Sbjct: 257 tgggccttcgcctttggtctcctaggcaacatcatctccttcatgacctacctggcccca 316 Query: 191 ataccaacattctaccggatcttcaagagcaaatccactgaggggttccagtcggtgccc 250 | || || |||||| |||||| ||||||||| || || |||||||||||||||| ||| Sbjct: 317 ctgccgacgttctacaggatctacaagagcaagtcgacgcaggggttccagtcggtaccc 376 Query: 251 tacgtcgtggccctgttcagcgcgatgctgtggatcttctacgcgctggtcaagaccggc 310 ||||| ||||| ||||||||||||||||||||||||| |||||||||| ||||| ||| | Sbjct: 377 tacgtggtggcgctgttcagcgcgatgctgtggatctactacgcgctgctcaagtccgac 436 Query: 311 gagggcctcctcatcaccatcaacgctgccggctgcgtcatcgagaccgtctacatcatc 370 ||| |||||||||||||||||||| | || |||||||||||||||||| |||||||| | Sbjct: 437 gagtgcctcctcatcaccatcaactccgctggctgcgtcatcgagaccatctacatcgcc 496 Query: 371 atgtacctcgtctacgcccccaggaaggccaagattttcacagccaagatcgtcctcctc 430 | ||||||||||||||||||| |||||||||||| ||||| |||||| || |||||||| Sbjct: 497 gtctacctcgtctacgcccccaagaaggccaagatgttcaccgccaagctcctcctcctc 556 Query: 431 ctcaacgtcgccggcttcgggctaatcttcctcctcaccctc 472 ||||||||| || |||||| || ||| |||||||||||||| Sbjct: 557 gtcaacgtcggcgtcttcggcctcatcctcctcctcaccctc 598 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 516 tctgcgtcggcttctccgtctgtgtcttcgtcgcacctctcagcatcatc 565 ||||||| |||||||||||| | ||||||||||| || || ||||||||| Sbjct: 642 tctgcgttggcttctccgtcagcgtcttcgtcgccccccttagcatcatc 691
>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0008H02, complete sequence Length = 143438 Score = 280 bits (141), Expect = 5e-72 Identities = 240/273 (87%) Strand = Plus / Minus Query: 200 ttctaccggatcttcaagagcaaatccactgaggggttccagtcggtgccctacgtcgtg 259 |||||| |||||| ||||||||| || || |||||||||||||||| |||||||| ||| Sbjct: 82558 ttctacaggatctacaagagcaagtcgacgcaggggttccagtcggtaccctacgtggtg 82499 Query: 260 gccctgttcagcgcgatgctgtggatcttctacgcgctggtcaagaccggcgagggcctc 319 || ||||||||||||||||||||||||| |||||||||| ||||| ||| |||| ||||| Sbjct: 82498 gcgctgttcagcgcgatgctgtggatctactacgcgctgctcaagtccgacgagtgcctc 82439 Query: 320 ctcatcaccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctc 379 ||||||||||||||| | || |||||||||||||||||| |||||||| | | |||||| Sbjct: 82438 ctcatcaccatcaactccgctggctgcgtcatcgagaccatctacatcgccgtctacctc 82379 Query: 380 gtctacgcccccaggaaggccaagattttcacagccaagatcgtcctcctcctcaacgtc 439 ||||||||||||| |||||||||||| ||||| |||||| || |||||||| |||||||| Sbjct: 82378 gtctacgcccccaagaaggccaagatgttcaccgccaagctcctcctcctcgtcaacgtc 82319 Query: 440 gccggcttcgggctaatcttcctcctcaccctc 472 | || |||||| || ||| |||||||||||||| Sbjct: 82318 ggcgtcttcggcctcatcctcctcctcaccctc 82286 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 516 tctgcgtcggcttctccgtctgtgtcttcgtcgcacctctcagcatcatcg 566 ||||||| |||||||||||| | ||||||||||| || || |||||||||| Sbjct: 82242 tctgcgttggcttctccgtcagcgtcttcgtcgccccccttagcatcatcg 82192
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 280 bits (141), Expect = 5e-72 Identities = 240/273 (87%) Strand = Plus / Minus Query: 200 ttctaccggatcttcaagagcaaatccactgaggggttccagtcggtgccctacgtcgtg 259 |||||| |||||| ||||||||| || || |||||||||||||||| |||||||| ||| Sbjct: 17574747 ttctacaggatctacaagagcaagtcgacgcaggggttccagtcggtaccctacgtggtg 17574688 Query: 260 gccctgttcagcgcgatgctgtggatcttctacgcgctggtcaagaccggcgagggcctc 319 || ||||||||||||||||||||||||| |||||||||| ||||| ||| |||| ||||| Sbjct: 17574687 gcgctgttcagcgcgatgctgtggatctactacgcgctgctcaagtccgacgagtgcctc 17574628 Query: 320 ctcatcaccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctc 379 ||||||||||||||| | || |||||||||||||||||| |||||||| | | |||||| Sbjct: 17574627 ctcatcaccatcaactccgctggctgcgtcatcgagaccatctacatcgccgtctacctc 17574568 Query: 380 gtctacgcccccaggaaggccaagattttcacagccaagatcgtcctcctcctcaacgtc 439 ||||||||||||| |||||||||||| ||||| |||||| || |||||||| |||||||| Sbjct: 17574567 gtctacgcccccaagaaggccaagatgttcaccgccaagctcctcctcctcgtcaacgtc 17574508 Query: 440 gccggcttcgggctaatcttcctcctcaccctc 472 | || |||||| || ||| |||||||||||||| Sbjct: 17574507 ggcgtcttcggcctcatcctcctcctcaccctc 17574475 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 516 tctgcgtcggcttctccgtctgtgtcttcgtcgcacctctcagcatcatcg 566 ||||||| |||||||||||| | ||||||||||| || || |||||||||| Sbjct: 17574431 tctgcgttggcttctccgtcagcgtcttcgtcgccccccttagcatcatcg 17574381
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 280 bits (141), Expect = 5e-72 Identities = 240/273 (87%) Strand = Plus / Minus Query: 200 ttctaccggatcttcaagagcaaatccactgaggggttccagtcggtgccctacgtcgtg 259 |||||| |||||| ||||||||| || || |||||||||||||||| |||||||| ||| Sbjct: 17668571 ttctacaggatctacaagagcaagtcgacgcaggggttccagtcggtaccctacgtggtg 17668512 Query: 260 gccctgttcagcgcgatgctgtggatcttctacgcgctggtcaagaccggcgagggcctc 319 || ||||||||||||||||||||||||| |||||||||| ||||| ||| |||| ||||| Sbjct: 17668511 gcgctgttcagcgcgatgctgtggatctactacgcgctgctcaagtccgacgagtgcctc 17668452 Query: 320 ctcatcaccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctc 379 ||||||||||||||| | || |||||||||||||||||| |||||||| | | |||||| Sbjct: 17668451 ctcatcaccatcaactccgctggctgcgtcatcgagaccatctacatcgccgtctacctc 17668392 Query: 380 gtctacgcccccaggaaggccaagattttcacagccaagatcgtcctcctcctcaacgtc 439 ||||||||||||| |||||||||||| ||||| |||||| || |||||||| |||||||| Sbjct: 17668391 gtctacgcccccaagaaggccaagatgttcaccgccaagctcctcctcctcgtcaacgtc 17668332 Query: 440 gccggcttcgggctaatcttcctcctcaccctc 472 | || |||||| || ||| |||||||||||||| Sbjct: 17668331 ggcgtcttcggcctcatcctcctcctcaccctc 17668299 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 516 tctgcgtcggcttctccgtctgtgtcttcgtcgcacctctcagcatcatcg 566 ||||||| |||||||||||| | ||||||||||| || || |||||||||| Sbjct: 17668255 tctgcgttggcttctccgtcagcgtcttcgtcgccccccttagcatcatcg 17668205 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 agaccggcgagggcctcctc 322 |||||||||||||||||||| Sbjct: 10762356 agaccggcgagggcctcctc 10762337
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 246 bits (124), Expect = 7e-62 Identities = 184/204 (90%) Strand = Plus / Minus Query: 200 ttctaccggatcttcaagagcaaatccactgaggggttccagtcggtgccctacgtcgtg 259 ||||||||||||| ||||||||| || || |||||||||||||||||||| ||||| ||| Sbjct: 17344858 ttctaccggatctacaagagcaagtcgacggaggggttccagtcggtgccgtacgtggtg 17344799 Query: 260 gccctgttcagcgcgatgctgtggatcttctacgcgctggtcaagaccggcgagggcctc 319 || || |||||||| |||||||||||||||||||||||| ||||| || ||||| |||| Sbjct: 17344798 gcgctcttcagcgccatgctgtggatcttctacgcgctgatcaagtccaacgaggccctc 17344739 Query: 320 ctcatcaccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctc 379 ||||||||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||| Sbjct: 17344738 ctcatcaccatcaacgccgccggttgcgtcatcgagaccatctacatcgtcatgtacctc 17344679 Query: 380 gtctacgcccccaggaaggccaag 403 | ||||||||||| |||||||||| Sbjct: 17344678 gcctacgcccccaagaaggccaag 17344655 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 506 ctcgggtggatctgcgtcggcttctccgtctgtgtcttcgtcgcacctctcagcatcatc 565 ||||| ||| ||||||||| |||||||||| | ||||| ||||| || |||||||||||| Sbjct: 17344311 ctcggctgggtctgcgtcgccttctccgtcagcgtctttgtcgcgccgctcagcatcatc 17344252 Query: 566 g 566 | Sbjct: 17344251 g 17344251 Score = 40.1 bits (20), Expect = 7.8 Identities = 41/48 (85%) Strand = Plus / Minus Query: 103 aatggctggcctatccatggagcacccttgggcattcgccttcggcct 150 |||||||||||| ||| || |||| || ||||| || ||||||||||| Sbjct: 17346017 aatggctggcctgtccctgcagcatccctgggcttttgccttcggcct 17345970
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 246 bits (124), Expect = 7e-62 Identities = 184/204 (90%) Strand = Plus / Minus Query: 200 ttctaccggatcttcaagagcaaatccactgaggggttccagtcggtgccctacgtcgtg 259 ||||||||||||| ||||||||| || || |||||||||||||||||||| ||||| ||| Sbjct: 17299229 ttctaccggatctacaagagcaagtcgacggaggggttccagtcggtgccgtacgtggtg 17299170 Query: 260 gccctgttcagcgcgatgctgtggatcttctacgcgctggtcaagaccggcgagggcctc 319 || || |||||||| |||||||||||||||||||||||| ||||| || ||||| |||| Sbjct: 17299169 gcgctcttcagcgccatgctgtggatcttctacgcgctgatcaagtccaacgaggccctc 17299110 Query: 320 ctcatcaccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctc 379 ||||||||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||| Sbjct: 17299109 ctcatcaccatcaacgccgccggttgcgtcatcgagaccatctacatcgtcatgtacctc 17299050 Query: 380 gtctacgcccccaggaaggccaag 403 | ||||||||||| |||||||||| Sbjct: 17299049 gcctacgcccccaagaaggccaag 17299026 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 506 ctcgggtggatctgcgtcggcttctccgtctgtgtcttcgtcgcacctctcagcatcatc 565 ||||| ||| ||||||||| |||||||||| | ||||| ||||| || |||||||||||| Sbjct: 17298682 ctcggctgggtctgcgtcgccttctccgtcagcgtctttgtcgcgccgctcagcatcatc 17298623 Query: 566 g 566 | Sbjct: 17298622 g 17298622 Score = 40.1 bits (20), Expect = 7.8 Identities = 41/48 (85%) Strand = Plus / Minus Query: 103 aatggctggcctatccatggagcacccttgggcattcgccttcggcct 150 |||||||||||| ||| || |||| || ||||| || ||||||||||| Sbjct: 17300388 aatggctggcctgtccctgcagcatccctgggcttttgccttcggcct 17300341
>emb|AL713927.3|CNS07YP4 Oryza sativa chromosome 12, . BAC OSJNBa0021B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 154826 Score = 246 bits (124), Expect = 7e-62 Identities = 184/204 (90%) Strand = Plus / Plus Query: 200 ttctaccggatcttcaagagcaaatccactgaggggttccagtcggtgccctacgtcgtg 259 ||||||||||||| ||||||||| || || |||||||||||||||||||| ||||| ||| Sbjct: 58511 ttctaccggatctacaagagcaagtcgacggaggggttccagtcggtgccgtacgtggtg 58570 Query: 260 gccctgttcagcgcgatgctgtggatcttctacgcgctggtcaagaccggcgagggcctc 319 || || |||||||| |||||||||||||||||||||||| ||||| || ||||| |||| Sbjct: 58571 gcgctcttcagcgccatgctgtggatcttctacgcgctgatcaagtccaacgaggccctc 58630 Query: 320 ctcatcaccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctc 379 ||||||||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||| Sbjct: 58631 ctcatcaccatcaacgccgccggttgcgtcatcgagaccatctacatcgtcatgtacctc 58690 Query: 380 gtctacgcccccaggaaggccaag 403 | ||||||||||| |||||||||| Sbjct: 58691 gcctacgcccccaagaaggccaag 58714 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 506 ctcgggtggatctgcgtcggcttctccgtctgtgtcttcgtcgcacctctcagcatcatc 565 ||||| ||| ||||||||| |||||||||| | ||||| ||||| || |||||||||||| Sbjct: 59058 ctcggctgggtctgcgtcgccttctccgtcagcgtctttgtcgcgccgctcagcatcatc 59117 Query: 566 g 566 | Sbjct: 59118 g 59118 Score = 40.1 bits (20), Expect = 7.8 Identities = 41/48 (85%) Strand = Plus / Plus Query: 103 aatggctggcctatccatggagcacccttgggcattcgccttcggcct 150 |||||||||||| ||| || |||| || ||||| || ||||||||||| Sbjct: 57352 aatggctggcctgtccctgcagcatccctgggcttttgccttcggcct 57399
>gb|AY105872.1| Zea mays PCO079046 mRNA sequence Length = 1346 Score = 224 bits (113), Expect = 2e-55 Identities = 251/297 (84%) Strand = Plus / Plus Query: 125 cacccttgggcattcgccttcggcctactgggcaacatcatctcttttacgagcctcctc 184 ||||| ||||| || || ||||| ||||| || ||| ||||||| || | || | |||| Sbjct: 263 cacccctgggcgtttgctttcggtctactaggtaacgtcatctccttcatgaccttcctg 322 Query: 185 gccccgataccaacattctaccggatcttcaagagcaaatccactgaggggttccagtcg 244 ||||||||||| || |||||||| |||| ||||||||| || || || || ||||||||| Sbjct: 323 gccccgataccgacgttctaccgcatctacaagagcaagtcgacggaaggcttccagtcg 382 Query: 245 gtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttctacgcgctggtcaag 304 || |||||||| || |||||||||||||| |||||||||||||||||||| ||| ||||| Sbjct: 383 gttccctacgtggttgccctgttcagcgccatgctgtggatcttctacgcactgatcaag 442 Query: 305 accggcgagggcctcctcatcaccatcaacgctgccggctgcgtcatcgagaccgtctac 364 || |||| | ||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct: 443 tccaacgagaccttcctcatcaccatcaacgccgccggctgcgtcatcgagaccatctac 502 Query: 365 atcatcatgtacctcgtctacgcccccaggaaggccaagattttcacagccaagatc 421 || |||||||| |||||||||| |||| ||| |||||| | ||||| ||||||||| Sbjct: 503 gtcgtcatgtacttcgtctacgcgcccaagaaagccaagctgttcacggccaagatc 559 Score = 73.8 bits (37), Expect = 6e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 512 tggatctgcgtcggcttctccgtctgtgtcttcgtcgcacctctcagcatcat 564 |||||||||||||||||||||||| ||||||||||||| || || |||||||| Sbjct: 650 tggatctgcgtcggcttctccgtcagtgtcttcgtcgcgccactaagcatcat 702
>gb|BT017471.1| Zea mays clone EL01N0408D01.c mRNA sequence Length = 1159 Score = 157 bits (79), Expect = 5e-35 Identities = 199/239 (83%), Gaps = 5/239 (2%) Strand = Plus / Plus Query: 230 gaggggttccagtcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttc 289 |||||||||||||||||||| ||||| ||||| || |||||||| ||||||||||||| | Sbjct: 8 gaggggttccagtcggtgccgtacgtggtggcgctcttcagcgccatgctgtggatctac 67 Query: 290 tacgcgctggtcaagaccggcgagggcctcctcatcaccatcaacgctgccggctgcgtc 349 ||||||||| ||||| || |||| || ||||||||||||||| | |||||||||||| Sbjct: 68 tacgcgctgctcaagtccaacgagttgctgctcatcaccatcaactccgccggctgcgtc 127 Query: 350 atcgagaccgtctacatcatcatgtacctcgtctacgcccccaggaaggccaagattttc 409 ||||||||| |||||||| | |||| ||||||| |||| ||||| ||| | ||| Sbjct: 128 atcgagaccctctacatc-----gcgcctcctctacgcgcccaacaaggcaaagctgttc 182 Query: 410 acagccaagatcgtcctcctcctcaacgtcgccggcttcgggctaatcttcctcctcac 468 || ||||||||| |||||||||||||||| | || ||||| || ||| |||||||||| Sbjct: 183 acggccaagatcctcctcctcctcaacgtgggcgtgttcggcctcatcctcctcctcac 241 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 506 ctcgggtggatctgcgtcggcttctccgtctgtgtcttcgtcgcacctctcagcatcatc 565 ||||| ||| ||||||||| |||||||||| | ||||||||||| || |||||||||||| Sbjct: 279 ctcggctgggtctgcgtcgccttctccgtcagcgtcttcgtcgcgccgctcagcatcatc 338
>ref|XM_465955.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1562 Score = 77.8 bits (39), Expect = 4e-11 Identities = 132/163 (80%) Strand = Plus / Plus Query: 230 gaggggttccagtcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttc 289 ||||||||||||||| ||| ||||| ||| | || |||||| ||||||||||| | | Sbjct: 327 gaggggttccagtcgacgccgtacgtggtgacgctcttcagctgcatgctgtggatgtac 386 Query: 290 tacgcgctggtcaagaccggcgagggcctcctcatcaccatcaacgctgccggctgcgtc 349 |||||| | |||||| |||||| | || || |||||||||| | || || |||||| Sbjct: 387 tacgcgttcgtcaagtccggcgccgagctgctggtcaccatcaatggtgtggggtgcgtc 446 Query: 350 atcgagaccgtctacatcatcatgtacctcgtctacgccccca 392 ||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 447 atcgagaccgtctacctcgccatgtacctcgcctacgccccca 489
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 77.8 bits (39), Expect = 4e-11 Identities = 132/163 (80%) Strand = Plus / Minus Query: 230 gaggggttccagtcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttc 289 ||||||||||||||| ||| ||||| ||| | || |||||| ||||||||||| | | Sbjct: 18555529 gaggggttccagtcgacgccgtacgtggtgacgctcttcagctgcatgctgtggatgtac 18555470 Query: 290 tacgcgctggtcaagaccggcgagggcctcctcatcaccatcaacgctgccggctgcgtc 349 |||||| | |||||| |||||| | || || |||||||||| | || || |||||| Sbjct: 18555469 tacgcgttcgtcaagtccggcgccgagctgctggtcaccatcaatggtgtggggtgcgtc 18555410 Query: 350 atcgagaccgtctacatcatcatgtacctcgtctacgccccca 392 ||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 18555409 atcgagaccgtctacctcgccatgtacctcgcctacgccccca 18555367 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 agaccggcgagggcctcctc 322 |||||||||||||||||||| Sbjct: 14051087 agaccggcgagggcctcctc 14051068
>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1789_D08 Length = 128673 Score = 77.8 bits (39), Expect = 4e-11 Identities = 132/163 (80%) Strand = Plus / Minus Query: 230 gaggggttccagtcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttc 289 ||||||||||||||| ||| ||||| ||| | || |||||| ||||||||||| | | Sbjct: 96668 gaggggttccagtcgacgccgtacgtggtgacgctcttcagctgcatgctgtggatgtac 96609 Query: 290 tacgcgctggtcaagaccggcgagggcctcctcatcaccatcaacgctgccggctgcgtc 349 |||||| | |||||| |||||| | || || |||||||||| | || || |||||| Sbjct: 96608 tacgcgttcgtcaagtccggcgccgagctgctggtcaccatcaatggtgtggggtgcgtc 96549 Query: 350 atcgagaccgtctacatcatcatgtacctcgtctacgccccca 392 ||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 96548 atcgagaccgtctacctcgccatgtacctcgcctacgccccca 96506
>dbj|AK103266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124G19, full insert sequence Length = 1562 Score = 77.8 bits (39), Expect = 4e-11 Identities = 132/163 (80%) Strand = Plus / Plus Query: 230 gaggggttccagtcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttc 289 ||||||||||||||| ||| ||||| ||| | || |||||| ||||||||||| | | Sbjct: 327 gaggggttccagtcgacgccgtacgtggtgacgctcttcagctgcatgctgtggatgtac 386 Query: 290 tacgcgctggtcaagaccggcgagggcctcctcatcaccatcaacgctgccggctgcgtc 349 |||||| | |||||| |||||| | || || |||||||||| | || || |||||| Sbjct: 387 tacgcgttcgtcaagtccggcgccgagctgctggtcaccatcaatggtgtggggtgcgtc 446 Query: 350 atcgagaccgtctacatcatcatgtacctcgtctacgccccca 392 ||||||||||||||| || ||||||||||| ||||||||||| Sbjct: 447 atcgagaccgtctacctcgccatgtacctcgcctacgccccca 489
>ref|XM_483522.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1500 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 242 tcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttctacgcgctggtc 301 |||||||| ||||| ||||| || |||||| || ||||||||||||||||||||||||| Sbjct: 316 tcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtg 375 Query: 302 aagacc 307 |||||| Sbjct: 376 aagacc 381 Score = 44.1 bits (22), Expect = 0.50 Identities = 52/62 (83%) Strand = Plus / Plus Query: 326 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 385 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 400 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 459 Query: 386 gc 387 || Sbjct: 460 gc 461
>ref|XM_507308.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702C09.33 mRNA Length = 1517 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 242 tcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttctacgcgctggtc 301 |||||||| ||||| ||||| || |||||| || ||||||||||||||||||||||||| Sbjct: 317 tcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtg 376 Query: 302 aagacc 307 |||||| Sbjct: 377 aagacc 382 Score = 44.1 bits (22), Expect = 0.50 Identities = 52/62 (83%) Strand = Plus / Plus Query: 326 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 385 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 401 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 460 Query: 386 gc 387 || Sbjct: 461 gc 462
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 242 tcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttctacgcgctggtc 301 |||||||| ||||| ||||| || |||||| || ||||||||||||||||||||||||| Sbjct: 26720096 tcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtg 26720037 Query: 302 aagacc 307 |||||| Sbjct: 26720036 aagacc 26720031 Score = 44.1 bits (22), Expect = 0.50 Identities = 52/62 (83%) Strand = Plus / Minus Query: 326 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 385 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 26720012 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 26719953 Query: 386 gc 387 || Sbjct: 26719952 gc 26719951
>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702C09 Length = 138203 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 242 tcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttctacgcgctggtc 301 |||||||| ||||| ||||| || |||||| || ||||||||||||||||||||||||| Sbjct: 131623 tcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtg 131564 Query: 302 aagacc 307 |||||| Sbjct: 131563 aagacc 131558 Score = 44.1 bits (22), Expect = 0.50 Identities = 52/62 (83%) Strand = Plus / Minus Query: 326 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 385 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 131539 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 131480 Query: 386 gc 387 || Sbjct: 131479 gc 131478
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 242 tcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttctacgcgctggtc 301 |||||||| ||||| ||||| || |||||| || ||||||||||||||||||||||||| Sbjct: 63438 tcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtg 63379 Query: 302 aagacc 307 |||||| Sbjct: 63378 aagacc 63373 Score = 44.1 bits (22), Expect = 0.50 Identities = 52/62 (83%) Strand = Plus / Minus Query: 326 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 385 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 63354 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 63295 Query: 386 gc 387 || Sbjct: 63294 gc 63293
>dbj|AK106127.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F06, full insert sequence Length = 1500 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 242 tcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttctacgcgctggtc 301 |||||||| ||||| ||||| || |||||| || ||||||||||||||||||||||||| Sbjct: 316 tcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtg 375 Query: 302 aagacc 307 |||||| Sbjct: 376 aagacc 381 Score = 44.1 bits (22), Expect = 0.50 Identities = 52/62 (83%) Strand = Plus / Plus Query: 326 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 385 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 400 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 459 Query: 386 gc 387 || Sbjct: 460 gc 461
>dbj|AK070510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056B21, full insert sequence Length = 1517 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 242 tcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttctacgcgctggtc 301 |||||||| ||||| ||||| || |||||| || ||||||||||||||||||||||||| Sbjct: 317 tcggtgccgtacgtggtggcgctcttcagctcggtgctgtggatcttctacgcgctggtg 376 Query: 302 aagacc 307 |||||| Sbjct: 377 aagacc 382 Score = 44.1 bits (22), Expect = 0.50 Identities = 52/62 (83%) Strand = Plus / Plus Query: 326 accatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctac 385 ||||||||||| |||||||| | ||||| ||| ||||||| || | |||||||||||| Sbjct: 401 accatcaacgccttcggctgcggcgtcgaggccgcctacatcgtcctctacctcgtctac 460 Query: 386 gc 387 || Sbjct: 461 gc 462
>gb|BT018599.1| Zea mays clone EL01N0449A02.d mRNA sequence Length = 1762 Score = 67.9 bits (34), Expect = 3e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 230 gaggggttccagtcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttc 289 ||||||||||||||| || ||||| ||| | ||||||||| ||||||||||||||| Sbjct: 373 gaggggttccagtcgaccccgtacgtggtgacgctgttcagctgcatgctgtggatcttc 432 Query: 290 tacgcgctggtcaagaccggcg 311 ||||||||| ||||| |||||| Sbjct: 433 tacgcgctgctcaagtccggcg 454
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 319 cctcatcaccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacct 378 |||| ||||||||||||| |||||||||| ||||| ||| ||||||| | | ||||| Sbjct: 122028 cctcctcaccatcaacgccttcggctgcgtcgtcgaggccgcctacatcgccgtctacct 121969 Query: 379 cgtctacgcccccagg 394 |||||||||||||||| Sbjct: 121968 cgtctacgcccccagg 121953 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 423 tcctcctcctcaacgtcgccggcttc 448 ||||||||||||||||||||| |||| Sbjct: 121924 tcctcctcctcaacgtcgccgccttc 121899
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 319 cctcatcaccatcaacgctgccggctgcgtcatcgagaccgtctacatcatcatgtacct 378 |||| ||||||||||||| |||||||||| ||||| ||| ||||||| | | ||||| Sbjct: 19402802 cctcctcaccatcaacgccttcggctgcgtcgtcgaggccgcctacatcgccgtctacct 19402743 Query: 379 cgtctacgcccccagg 394 |||||||||||||||| Sbjct: 19402742 cgtctacgcccccagg 19402727 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 423 tcctcctcctcaacgtcgccggcttc 448 ||||||||||||||||||||| |||| Sbjct: 19402698 tcctcctcctcaacgtcgccgccttc 19402673
>gb|BT017750.1| Zea mays clone EL01N0450B09.c mRNA sequence Length = 1251 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 242 tcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttctacgcgctggtc 301 |||||||| ||||| ||||| ||||||||| | |||||||||| | ||||||||||| Sbjct: 273 tcggtgccgtacgtggtggctctgttcagctgcacgctgtggatcctgtacgcgctggtg 332 Query: 302 aagacc 307 |||||| Sbjct: 333 aagacc 338
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.032 Identities = 51/60 (85%) Strand = Plus / Minus Query: 235 gttccagtcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttctacgc 294 ||||||||||||||| |||| ||||| ||| | ||||| ||||||||| ||| |||||| Sbjct: 12981969 gttccagtcggtgccgtacgcggtggcgctgctgagcgcaatgctgtggctctactacgc 12981910 Score = 44.1 bits (22), Expect = 0.50 Identities = 52/62 (83%) Strand = Plus / Minus Query: 340 cggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctacgcccccaggaaggc 399 ||||||| || ||||| || ||||| ||| | | |||||| |||||||||||||| |||| Sbjct: 12981867 cggctgcctcgtcgagtccctctacctcaccgtctacctcctctacgcccccaggcaggc 12981808 Query: 400 ca 401 || Sbjct: 12981807 ca 12981806
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.032 Identities = 51/60 (85%) Strand = Plus / Minus Query: 235 gttccagtcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttctacgc 294 ||||||||||||||| |||| ||||| ||| | ||||| ||||||||| ||| |||||| Sbjct: 12978744 gttccagtcggtgccgtacgcggtggcgctgctgagcgcaatgctgtggctctactacgc 12978685 Score = 44.1 bits (22), Expect = 0.50 Identities = 52/62 (83%) Strand = Plus / Minus Query: 340 cggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctacgcccccaggaaggc 399 ||||||| || ||||| || ||||| ||| | | |||||| |||||||||||||| |||| Sbjct: 12978642 cggctgcctcgtcgagtccctctacctcaccgtctacctcctctacgcccccaggcaggc 12978583 Query: 400 ca 401 || Sbjct: 12978582 ca 12978581
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 48.1 bits (24), Expect = 0.032 Identities = 51/60 (85%) Strand = Plus / Minus Query: 235 gttccagtcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttctacgc 294 ||||||||||||||| |||| ||||| ||| | ||||| ||||||||| ||| |||||| Sbjct: 59667 gttccagtcggtgccgtacgcggtggcgctgctgagcgcaatgctgtggctctactacgc 59608 Score = 44.1 bits (22), Expect = 0.50 Identities = 52/62 (83%) Strand = Plus / Minus Query: 340 cggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctacgcccccaggaaggc 399 ||||||| || ||||| || ||||| ||| | | |||||| |||||||||||||| |||| Sbjct: 59565 cggctgcctcgtcgagtccctctacctcaccgtctacctcctctacgcccccaggcaggc 59506 Query: 400 ca 401 || Sbjct: 59505 ca 59504
>dbj|AK109114.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-C05, full insert sequence Length = 1492 Score = 48.1 bits (24), Expect = 0.032 Identities = 51/60 (85%) Strand = Plus / Plus Query: 235 gttccagtcggtgccctacgtcgtggccctgttcagcgcgatgctgtggatcttctacgc 294 ||||||||||||||| |||| ||||| ||| | ||||| ||||||||| ||| |||||| Sbjct: 275 gttccagtcggtgccgtacgcggtggcgctgctgagcgcaatgctgtggctctactacgc 334 Score = 44.1 bits (22), Expect = 0.50 Identities = 52/62 (83%) Strand = Plus / Plus Query: 340 cggctgcgtcatcgagaccgtctacatcatcatgtacctcgtctacgcccccaggaaggc 399 ||||||| || ||||| || ||||| ||| | | |||||| |||||||||||||| |||| Sbjct: 377 cggctgcctcgtcgagtccctctacctcaccgtctacctcctctacgcccccaggcaggc 436 Query: 400 ca 401 || Sbjct: 437 ca 438
>emb|AL591502.10| Human DNA sequence from clone RP11-199C17 on chromosome 9 Contains the 5' end of the TBC1D2 gene for TBC1 domain family, member 2 (PARIS1, PARIS-1,DKFZP761D1823, DKFZp761D1823), the 3' end of the GPR51 gene for G protein-coupled receptor 51 (HG20, GABBR2, GPRC3B, GABABR2) and a CpG island, complete sequence Length = 156753 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 460 cctcctcaccctctttgccttc 481 |||||||||||||||||||||| Sbjct: 24316 cctcctcaccctctttgccttc 24337
>gb|AC098935.2| Homo sapiens chromosome 1 clone RP11-564A8, complete sequence Length = 192565 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 456 tcttcctcctcaccctctttgccttc 481 |||||||||||||||| ||||||||| Sbjct: 83513 tcttcctcctcaccctttttgccttc 83538
>gb|DQ374432.1| Branchiostoma belcheri fibroblast growth factor receptor (fgfr) gene, complete cds Length = 5430 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 456 tcttcctcctcaccctctttgccttc 481 |||||||||||||| ||||||||||| Sbjct: 1562 tcttcctcctcaccatctttgccttc 1587
>emb|AL606498.17| Mouse DNA sequence from clone RP23-197C15 on chromosome 11, complete sequence Length = 222330 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 111 gcctatccatggagcacccttgggca 136 |||||||||||||||||||| ||||| Sbjct: 85669 gcctatccatggagcaccctagggca 85644
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 292 cgcgctggtcaagaccggcgagggc 316 ||||||||||||||||||| ||||| Sbjct: 124258 cgcgctggtcaagaccggccagggc 124282 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 292 cgcgctggtcaagaccggcgagggc 316 ||||||||||||||||||| ||||| Sbjct: 123454 cgcgctggtcaagaccggccagggc 123478 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 292 cgcgctggtcaagaccggcgagggc 316 ||||||||||||||||||| ||||| Sbjct: 122110 cgcgctggtcaagaccggccagggc 122134 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cgcgctggtcaagaccggcg 311 |||||||||||||||||||| Sbjct: 121849 cgcgctggtcaagaccggcg 121868
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14 Length = 349146 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 292 cgcgctggtcaagaccggcgagggc 316 ||||||||||||||||||| ||||| Sbjct: 126071 cgcgctggtcaagaccggccagggc 126095 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cgcgctggtcaagaccggcg 311 |||||||||||||||||||| Sbjct: 125810 cgcgctggtcaagaccggcg 125829
>gb|AC114689.4| Homo sapiens chromosome 18, clone RP11-638L3, complete sequence Length = 177781 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ctctttgccttccacggtgag 490 ||||||||||||||||||||| Sbjct: 160364 ctctttgccttccacggtgag 160384
>gb|AC100844.2| Homo sapiens chromosome 18, clone RP11-659F24, complete sequence Length = 165879 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ctctttgccttccacggtgag 490 ||||||||||||||||||||| Sbjct: 14039 ctctttgccttccacggtgag 14059
>gb|AC021561.8| Homo sapiens chromosome 18, clone RP11-766D3, complete sequence Length = 174508 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ctctttgccttccacggtgag 490 ||||||||||||||||||||| Sbjct: 132277 ctctttgccttccacggtgag 132297
>gb|AC008685.8| Homo sapiens chromosome 5 clone CTB-59H21, complete sequence Length = 159713 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 accgtctacatcatcatgtac 376 ||||||||||||||||||||| Sbjct: 123582 accgtctacatcatcatgtac 123602
>gb|AC010591.10| Homo sapiens chromosome 5 clone CTC-447K7, complete sequence Length = 172745 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 accgtctacatcatcatgtac 376 ||||||||||||||||||||| Sbjct: 26888 accgtctacatcatcatgtac 26908
>ref|NM_124458.1| Arabidopsis thaliana unknown protein AT5G50800 mRNA, complete cds Length = 1252 Score = 40.1 bits (20), Expect = 7.8 Identities = 41/48 (85%) Strand = Plus / Plus Query: 320 ctcatcaccatcaacgctgccggctgcgtcatcgagaccgtctacatc 367 ||||||||||| |||||| || ||||||||||| ||| |||||||| Sbjct: 378 ctcatcaccataaacgcttttggatgcgtcatcgaaaccatctacatc 425
>ref|NM_124457.2| Arabidopsis thaliana unknown protein AT5G50790 mRNA, complete cds Length = 1250 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 263 ctgttcagcgcgatgctgtggatcttctacgc 294 ||||||||||||||||| ||||| | |||||| Sbjct: 326 ctgttcagcgcgatgctatggatgtactacgc 357
>gb|AC152947.1| Mus musculus 10 BAC RP23-12H20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222139 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 tgtcttatttcccttcaata 90 |||||||||||||||||||| Sbjct: 66250 tgtcttatttcccttcaata 66231
>ref|NM_195736.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0008A05.5), mRNA Length = 330 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 tcgtcctcctcctcaacgtcgccg 443 ||||||||||||||| |||||||| Sbjct: 32 tcgtcctcctcctcaccgtcgccg 55
>ref|XM_954748.1| Neurospora crassa OR74A hypothetical protein (NCU05850.1) partial mRNA Length = 1644 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 422 gtcctcctcctcaacgtcgccggc 445 |||||||||||||||| ||||||| Sbjct: 94 gtcctcctcctcaacgccgccggc 117
>ref|XM_325704.1| Neurospora crassa OR74A hypothetical protein (NCU05850.1) partial mRNA Length = 1644 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 422 gtcctcctcctcaacgtcgccggc 445 |||||||||||||||| ||||||| Sbjct: 94 gtcctcctcctcaacgccgccggc 117
>gb|AC102388.7| Mus musculus chromosome 3, clone RP24-298F19, complete sequence Length = 166620 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 450 ggctaatcttcctcctcaccctctttgc 477 |||||| ||||| ||||||||||||||| Sbjct: 14281 ggctaagcttccgcctcaccctctttgc 14308
>emb|CR352290.10| Zebrafish DNA sequence from clone DKEY-107G12 in linkage group 18, complete sequence Length = 137797 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 agcaaaaaacaacctctagcccca 27 |||||||||||||| ||||||||| Sbjct: 101852 agcaaaaaacaaccgctagcccca 101829
>ref|XM_812631.1| Trypanosoma cruzi strain CL Brener coatomer gamma subunit (Tc00.1047053511211.20) partial mRNA Length = 2598 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 tcctcctcctcaacgtcgcc 442 |||||||||||||||||||| Sbjct: 2207 tcctcctcctcaacgtcgcc 2188
>emb|AL355474.15| Human DNA sequence from clone RP11-55C5 on chromosome 10 Contains a novel gene and the 5' end of the FAM13C1 gene for family with sequence similarity 13 member C1, complete sequence Length = 120194 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tcttcctcctcaccctcttt 475 |||||||||||||||||||| Sbjct: 40321 tcttcctcctcaccctcttt 40302
>emb|AL031277.1|HS1177E19 Human DNA sequence from clone RP5-1177E19 on chromosome 1p36.12-36.31 Contains the 3' end of the PRDM2 gene for PR domain containing 2 with ZNF domain, a novel gene and a CpG island, complete sequence Length = 151188 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 cagcaggcttgttgtcaacttcat 67 |||||||| ||||||||||||||| Sbjct: 93124 cagcaggcatgttgtcaacttcat 93101
>emb|BX927064.8| Zebrafish DNA sequence from clone DKEY-73N8 in linkage group 24, complete sequence Length = 181758 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 gcttgttgtcaacttcatatctgt 73 ||||||| |||||||||||||||| Sbjct: 11383 gcttgttatcaacttcatatctgt 11360
>emb|X75026.1|DMRNACE D.melanogaster mRNA for cyclin E type I Length = 3900 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 tcgtcctcctcctcaacgtc 439 |||||||||||||||||||| Sbjct: 1187 tcgtcctcctcctcaacgtc 1168
>gb|BC065603.1| Danio rerio p21/Cdc42/Rac1-activated kinase 1, mRNA (cDNA clone MGC:77309 IMAGE:6966279), complete cds Length = 2802 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 agcaaaaaacaacctctagcccca 27 |||||||||||||| ||||||||| Sbjct: 1808 agcaaaaaacaaccgctagcccca 1831
>gb|BC044138.1| Danio rerio p21/Cdc42/Rac1-activated kinase 1, mRNA (cDNA clone MGC:55281 IMAGE:2599651), complete cds Length = 2811 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 agcaaaaaacaacctctagcccca 27 |||||||||||||| ||||||||| Sbjct: 1838 agcaaaaaacaaccgctagcccca 1861
>gb|AC099774.6| Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence Length = 147651 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 420 tcgtcctcctcctcaacgtcgccg 443 ||||||||||||||| |||||||| Sbjct: 142228 tcgtcctcctcctcaccgtcgccg 142205
>ref|NM_165125.2| Drosophila melanogaster Cyclin E CG3938-RE, transcript variant E (CycE), mRNA Length = 3505 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 tcgtcctcctcctcaacgtc 439 |||||||||||||||||||| Sbjct: 1042 tcgtcctcctcctcaacgtc 1023
>ref|NM_165124.2| Drosophila melanogaster Cyclin E CG3938-RD, transcript variant D (CycE), mRNA Length = 3742 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 tcgtcctcctcctcaacgtc 439 |||||||||||||||||||| Sbjct: 1279 tcgtcctcctcctcaacgtc 1260
>ref|NM_165123.2| Drosophila melanogaster Cyclin E CG3938-RC, transcript variant C (CycE), mRNA Length = 3512 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 tcgtcctcctcctcaacgtc 439 |||||||||||||||||||| Sbjct: 1027 tcgtcctcctcctcaacgtc 1008
>gb|AC025038.6| Homo sapiens chromosome 10 clone RP11-443O13, complete sequence Length = 163132 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tcttcctcctcaccctcttt 475 |||||||||||||||||||| Sbjct: 40104 tcttcctcctcaccctcttt 40123
>ref|NM_057612.4| Drosophila melanogaster Cyclin E CG3938-RB, transcript variant B (CycE), mRNA Length = 3649 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 tcgtcctcctcctcaacgtc 439 |||||||||||||||||||| Sbjct: 1186 tcgtcctcctcctcaacgtc 1167
>ref|NM_057611.4| Drosophila melanogaster Cyclin E CG3938-RA, transcript variant A (CycE), mRNA Length = 3658 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 tcgtcctcctcctcaacgtc 439 |||||||||||||||||||| Sbjct: 1195 tcgtcctcctcctcaacgtc 1176
>gb|AY064674.1| Arabidopsis thaliana MtN3-like protein (At5g50790; MFB16.19) mRNA, complete cds Length = 934 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 263 ctgttcagcgcgatgctgtggatcttctacgc 294 ||||||||||||||||| ||||| | |||||| Sbjct: 154 ctgttcagcgcgatgctatggatgtactacgc 185
>gb|AC091749.8| Oryza sativa chromosome 10 BAC OSJNBb0008A05 genomic sequence, complete sequence Length = 150465 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 420 tcgtcctcctcctcaacgtcgccg 443 ||||||||||||||| |||||||| Sbjct: 6659 tcgtcctcctcctcaccgtcgccg 6636
>gb|AY061233.1| Drosophila melanogaster LD17578 full length cDNA Length = 1948 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 tcgtcctcctcctcaacgtc 439 |||||||||||||||||||| Sbjct: 310 tcgtcctcctcctcaacgtc 291
>gb|AY054548.1| Arabidopsis thaliana MtN3-like protein (At5g50790; MFB16.19) mRNA, complete cds Length = 1250 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 263 ctgttcagcgcgatgctgtggatcttctacgc 294 ||||||||||||||||| ||||| | |||||| Sbjct: 326 ctgttcagcgcgatgctatggatgtactacgc 357
>ref|XM_624137.1| PREDICTED: Apis mellifera similar to ENSANGP00000001263 (LOC551750), mRNA Length = 2195 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 420 tcgtcctcctcctcaacgtcgccg 443 |||||||||||||| ||||||||| Sbjct: 664 tcgtcctcctcctccacgtcgccg 641
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 420 tcgtcctcctcctcaacgtcgccg 443 ||||||||||||||| |||||||| Sbjct: 8751587 tcgtcctcctcctcaccgtcgccg 8751564
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 agaccggcgagggcctcctc 322 |||||||||||||||||||| Sbjct: 1241550 agaccggcgagggcctcctc 1241569
>emb|BX829624.1|CNS0A18V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB25ZF08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1177 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 263 ctgttcagcgcgatgctgtggatcttctacgc 294 ||||||||||||||||| ||||| | |||||| Sbjct: 290 ctgttcagcgcgatgctatggatgtactacgc 321
>ref|NM_201328.1| Danio rerio p21/Cdc42/Rac1-activated kinase 1 (pak1), mRNA Length = 2811 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 agcaaaaaacaacctctagcccca 27 |||||||||||||| ||||||||| Sbjct: 1838 agcaaaaaacaaccgctagcccca 1861
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 gatgctgtggatcttctacgcgct 297 ||||||||||||||||| |||||| Sbjct: 2799007 gatgctgtggatcttctgcgcgct 2798984
>gb|AC105051.1| Homo sapiens BAC clone RP11-292A3 from 2, complete sequence Length = 147639 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 18 tctagccccactgttgattaattt 41 |||||||||||| ||||||||||| Sbjct: 110059 tctagccccactattgattaattt 110082
>gb|AY069507.2| Drosophila melanogaster LD22682 full insert cDNA Length = 3514 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 tcgtcctcctcctcaacgtc 439 |||||||||||||||||||| Sbjct: 1030 tcgtcctcctcctcaacgtc 1011
>gb|AY087516.1| Arabidopsis thaliana clone 36264 mRNA, complete sequence Length = 1252 Score = 40.1 bits (20), Expect = 7.8 Identities = 41/48 (85%) Strand = Plus / Plus Query: 320 ctcatcaccatcaacgctgccggctgcgtcatcgagaccgtctacatc 367 ||||||||||| |||||| || ||||||||||| ||| |||||||| Sbjct: 378 ctcatcaccataaacgcttttggatgcgtcatcgaaaccatctacatc 425
>gb|AY084672.1| Arabidopsis thaliana clone 114681 mRNA, complete sequence Length = 1221 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 263 ctgttcagcgcgatgctgtggatcttctacgc 294 ||||||||||||||||| ||||| | |||||| Sbjct: 324 ctgttcagcgcgatgctatggatgtactacgc 355
>dbj|AP004136.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1287_H05 Length = 97812 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 agaccggcgagggcctcctc 322 |||||||||||||||||||| Sbjct: 32597 agaccggcgagggcctcctc 32578
>dbj|AB025617.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K7B16 Length = 26721 Score = 40.1 bits (20), Expect = 7.8 Identities = 41/48 (85%) Strand = Plus / Minus Query: 320 ctcatcaccatcaacgctgccggctgcgtcatcgagaccgtctacatc 367 ||||||||||| |||||| || ||||||||||| ||| |||||||| Sbjct: 4779 ctcatcaccataaacgcttttggatgcgtcatcgaaaccatctacatc 4732
>dbj|AB023037.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFB16 Length = 66087 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 263 ctgttcagcgcgatgctgtggatcttctacgc 294 ||||||||||||||||| ||||| | |||||| Sbjct: 61604 ctgttcagcgcgatgctatggatgtactacgc 61573
>dbj|AK065640.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038P06, full insert sequence Length = 2191 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 agaccggcgagggcctcctc 322 |||||||||||||||||||| Sbjct: 317 agaccggcgagggcctcctc 336
>gb|AY108458.1| Zea mays PCO137991 mRNA sequence Length = 991 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 539 gtcttcgtcgcacctctcagcatcatcg 566 ||||||||||| || ||||||||||||| Sbjct: 99 gtcttcgtcgcgccgctcagcatcatcg 126
>gb|AE003648.2| Drosophila melanogaster chromosome 2L, section 57 of 83 of the complete sequence Length = 284900 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 tcgtcctcctcctcaacgtc 439 |||||||||||||||||||| Sbjct: 202973 tcgtcctcctcctcaacgtc 202992
>gb|AY900120.1| Oryza sativa (japonica cultivar-group) SNAP1 (SNAP1) mRNA, complete cds Length = 1014 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 agaccggcgagggcctcctc 322 |||||||||||||||||||| Sbjct: 96 agaccggcgagggcctcctc 115
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 420 tcgtcctcctcctcaacgtcgccg 443 ||||||||||||||| |||||||| Sbjct: 8756726 tcgtcctcctcctcaccgtcgccg 8756703
>gb|AC145168.5| Mus musculus BAC clone RP23-398K14 from 3, complete sequence Length = 217058 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 450 ggctaatcttcctcctcaccctctttgc 477 |||||| ||||| ||||||||||||||| Sbjct: 42727 ggctaagcttccgcctcaccctctttgc 42700
>dbj|AP004956.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34I04, TM0133, complete sequence Length = 106411 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aatttgccagcaggcttgtt 56 |||||||||||||||||||| Sbjct: 44034 aatttgccagcaggcttgtt 44015
>gb|AC171681.1| Mus musculus BAC clone RP24-530O2 from chromosome 14, complete sequence Length = 198038 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tcaatatcttcgtatcacaa 104 |||||||||||||||||||| Sbjct: 73742 tcaatatcttcgtatcacaa 73723
>emb|AL691427.15| Mouse DNA sequence from clone RP23-317I15 on chromosome 3, complete sequence Length = 213090 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tcttcctcctcaccctcttt 475 |||||||||||||||||||| Sbjct: 28978 tcttcctcctcaccctcttt 28997
>gb|J04432.1|NEURPNUC Neurospora crassa nuclear-encoded mitochondrial protein gene, complete cds Length = 2573 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 422 gtcctcctcctcaacgtcgccggc 445 |||||||||||||||| ||||||| Sbjct: 2451 gtcctcctcctcaacgccgccggc 2474 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,100,423 Number of Sequences: 3902068 Number of extensions: 5100423 Number of successful extensions: 90939 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90318 Number of HSP's gapped (non-prelim): 620 length of query: 572 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 549 effective length of database: 17,143,297,704 effective search space: 9411670439496 effective search space used: 9411670439496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)