Clone Name | bart41c03 |
---|---|
Clone Library Name | barley_pub |
>emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032F06, complete sequence Length = 148023 Score = 341 bits (172), Expect = 2e-90 Identities = 324/374 (86%), Gaps = 3/374 (0%) Strand = Plus / Minus Query: 99 cggacgccgccggcgtcggcgtcacctacggcaggcgtgcgacgagcctcccgccgccgg 158 |||| |||| ||||||||||||||||||||||| ||| | ||||| | | |||||||||| Sbjct: 57162 cggatgccggcggcgtcggcgtcacctacggcatgcgggggacgaccatgccgccgccgg 57103 Query: 159 ccgacgtcgcgcggttcctcgcccgcggcaccgtcctcgaccgcgtgaggctcctgaacg 218 |||||||||||||||||||| |||||| |||| || |||||||||| |||| ||| ||| Sbjct: 57102 ccgacgtcgcgcggttcctctcccgcgacaccatcttcgaccgcgtccggctgctggacg 57043 Query: 219 ccgacccgctcgccctgcgggccttcgccggcatgggcctcgccgtggacgtcaccgtcc 278 ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 57042 ccgacccgcgcgcgctgcgggccttcgccggcaccggcctcgccgtggacgtcaccgtcc 56983 Query: 279 cgaacgccctcgtgccgcgcatcgccgacagcgttgccttcgcgcggcgatgggtgcgcg 338 | |||||| ||| |||||| |||||| |||| || | ||||||||| |||||||||| Sbjct: 56982 ccaacgccgacgttccgcgcctcgccgccagccgcgcgtccgcgcggcggtgggtgcgcg 56923 Query: 339 ccagcgtcgcgccccacgtcgcggccgggaccaacgtgtcgcggatcctcgtgggcaggg 398 ||||||||||||| ||| | |||| |||||||| |||||| ||||||| ||| | Sbjct: 56922 ccagcgtcgcgccgtacgcggaggcc---accaacgtctcgcgggtcctcgtcggcgacg 56866 Query: 399 acgtgatctcgcaggccaaccggacgctgctgctctgcctcgtgccggccatgcagaacc 458 | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct: 56865 aggtgatctcgcaggccaaccggacgctgctgctcagcctcgtgccggccatgcggaacc 56806 Query: 459 tgcacacggcgctg 472 ||||| |||||||| Sbjct: 56805 tgcacgcggcgctg 56792 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 513 cgcactccctcggcgtcctcgccgtgtccacgccgccgtccgccgggcggttcc 566 |||| ||||||||| |||| |||| ||||||||||||||| ||||||||||||| Sbjct: 56736 cgcattccctcggcatcctggccgcgtccacgccgccgtcggccgggcggttcc 56683
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 341 bits (172), Expect = 2e-90 Identities = 324/374 (86%), Gaps = 3/374 (0%) Strand = Plus / Minus Query: 99 cggacgccgccggcgtcggcgtcacctacggcaggcgtgcgacgagcctcccgccgccgg 158 |||| |||| ||||||||||||||||||||||| ||| | ||||| | | |||||||||| Sbjct: 34851049 cggatgccggcggcgtcggcgtcacctacggcatgcgggggacgaccatgccgccgccgg 34850990 Query: 159 ccgacgtcgcgcggttcctcgcccgcggcaccgtcctcgaccgcgtgaggctcctgaacg 218 |||||||||||||||||||| |||||| |||| || |||||||||| |||| ||| ||| Sbjct: 34850989 ccgacgtcgcgcggttcctctcccgcgacaccatcttcgaccgcgtccggctgctggacg 34850930 Query: 219 ccgacccgctcgccctgcgggccttcgccggcatgggcctcgccgtggacgtcaccgtcc 278 ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 34850929 ccgacccgcgcgcgctgcgggccttcgccggcaccggcctcgccgtggacgtcaccgtcc 34850870 Query: 279 cgaacgccctcgtgccgcgcatcgccgacagcgttgccttcgcgcggcgatgggtgcgcg 338 | |||||| ||| |||||| |||||| |||| || | ||||||||| |||||||||| Sbjct: 34850869 ccaacgccgacgttccgcgcctcgccgccagccgcgcgtccgcgcggcggtgggtgcgcg 34850810 Query: 339 ccagcgtcgcgccccacgtcgcggccgggaccaacgtgtcgcggatcctcgtgggcaggg 398 ||||||||||||| ||| | |||| |||||||| |||||| ||||||| ||| | Sbjct: 34850809 ccagcgtcgcgccgtacgcggaggcc---accaacgtctcgcgggtcctcgtcggcgacg 34850753 Query: 399 acgtgatctcgcaggccaaccggacgctgctgctctgcctcgtgccggccatgcagaacc 458 | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct: 34850752 aggtgatctcgcaggccaaccggacgctgctgctcagcctcgtgccggccatgcggaacc 34850693 Query: 459 tgcacacggcgctg 472 ||||| |||||||| Sbjct: 34850692 tgcacgcggcgctg 34850679 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 513 cgcactccctcggcgtcctcgccgtgtccacgccgccgtccgccgggcggttcc 566 |||| ||||||||| |||| |||| ||||||||||||||| ||||||||||||| Sbjct: 34850623 cgcattccctcggcatcctggccgcgtccacgccgccgtcggccgggcggttcc 34850570
>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete sequence Length = 115564 Score = 341 bits (172), Expect = 2e-90 Identities = 324/374 (86%), Gaps = 3/374 (0%) Strand = Plus / Minus Query: 99 cggacgccgccggcgtcggcgtcacctacggcaggcgtgcgacgagcctcccgccgccgg 158 |||| |||| ||||||||||||||||||||||| ||| | ||||| | | |||||||||| Sbjct: 30660 cggatgccggcggcgtcggcgtcacctacggcatgcgggggacgaacatgccgccgccgg 30601 Query: 159 ccgacgtcgcgcggttcctcgcccgcggcaccgtcctcgaccgcgtgaggctcctgaacg 218 |||||||||||||||||||| |||||| |||| || |||||||||| |||| ||| ||| Sbjct: 30600 ccgacgtcgcgcggttcctctcccgcgacaccatcttcgaccgcgtccggctgctggacg 30541 Query: 219 ccgacccgctcgccctgcgggccttcgccggcatgggcctcgccgtggacgtcaccgtcc 278 ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 30540 ccgacccgcgcgcgctgcgggccttcgccggcaccggcctcgccgtggacgtcaccgtcc 30481 Query: 279 cgaacgccctcgtgccgcgcatcgccgacagcgttgccttcgcgcggcgatgggtgcgcg 338 | |||||| ||| |||||| |||||| |||| || | ||||||||| |||||||||| Sbjct: 30480 ccaacgccgacgttccgcgcctcgccgccagccgcgcgtccgcgcggcggtgggtgcgcg 30421 Query: 339 ccagcgtcgcgccccacgtcgcggccgggaccaacgtgtcgcggatcctcgtgggcaggg 398 ||||||||||||| ||| | |||| |||||||| |||||| ||||||| ||| | Sbjct: 30420 ccagcgtcgcgccgtacgcggaggcc---accaacgtctcgcgggtcctcgtcggcgacg 30364 Query: 399 acgtgatctcgcaggccaaccggacgctgctgctctgcctcgtgccggccatgcagaacc 458 | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct: 30363 aggtgatctcgcaggccaaccggacgctgctgctcagcctcgtgccggccatgcggaacc 30304 Query: 459 tgcacacggcgctg 472 ||||| |||||||| Sbjct: 30303 tgcacgcggcgctg 30290 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 513 cgcactccctcggcgtcctcgccgtgtccacgccgccgtccgccgggcggttcc 566 |||||||||||||| |||| |||| ||||||||||||||| ||||||||||||| Sbjct: 30234 cgcactccctcggcatcctggccgcgtccacgccgccgtcggccgggcggttcc 30181
>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete sequence Length = 110682 Score = 341 bits (172), Expect = 2e-90 Identities = 324/374 (86%), Gaps = 3/374 (0%) Strand = Plus / Minus Query: 99 cggacgccgccggcgtcggcgtcacctacggcaggcgtgcgacgagcctcccgccgccgg 158 |||| |||| ||||||||||||||||||||||| ||| | ||||| | | |||||||||| Sbjct: 104736 cggatgccggcggcgtcggcgtcacctacggcatgcgggggacgaacatgccgccgccgg 104677 Query: 159 ccgacgtcgcgcggttcctcgcccgcggcaccgtcctcgaccgcgtgaggctcctgaacg 218 |||||||||||||||||||| |||||| |||| || |||||||||| |||| ||| ||| Sbjct: 104676 ccgacgtcgcgcggttcctctcccgcgacaccatcttcgaccgcgtccggctgctggacg 104617 Query: 219 ccgacccgctcgccctgcgggccttcgccggcatgggcctcgccgtggacgtcaccgtcc 278 ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 104616 ccgacccgcgcgcgctgcgggccttcgccggcaccggcctcgccgtggacgtcaccgtcc 104557 Query: 279 cgaacgccctcgtgccgcgcatcgccgacagcgttgccttcgcgcggcgatgggtgcgcg 338 | |||||| ||| |||||| |||||| |||| || | ||||||||| |||||||||| Sbjct: 104556 ccaacgccgacgttccgcgcctcgccgccagccgcgcgtccgcgcggcggtgggtgcgcg 104497 Query: 339 ccagcgtcgcgccccacgtcgcggccgggaccaacgtgtcgcggatcctcgtgggcaggg 398 ||||||||||||| ||| | |||| |||||||| |||||| ||||||| ||| | Sbjct: 104496 ccagcgtcgcgccgtacgcggaggcc---accaacgtctcgcgggtcctcgtcggcgacg 104440 Query: 399 acgtgatctcgcaggccaaccggacgctgctgctctgcctcgtgccggccatgcagaacc 458 | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct: 104439 aggtgatctcgcaggccaaccggacgctgctgctcagcctcgtgccggccatgcggaacc 104380 Query: 459 tgcacacggcgctg 472 ||||| |||||||| Sbjct: 104379 tgcacgcggcgctg 104366 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 513 cgcactccctcggcgtcctcgccgtgtccacgccgccgtccgccgggcggttcc 566 |||||||||||||| |||| |||| ||||||||||||||| ||||||||||||| Sbjct: 104310 cgcactccctcggcatcctggccgcgtccacgccgccgtcggccgggcggttcc 104257
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 91 cgccgcggcggacgccgccggcgtcggcg 119 |||||||||||||||||||||||| |||| Sbjct: 1033000 cgccgcggcggacgccgccggcgtgggcg 1032972
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Minus Query: 90 tcgccgcggcggacgccgccggcgtcggcgtc 121 |||||||||||||||||| |||| |||||||| Sbjct: 5503328 tcgccgcggcggacgccggcggcctcggcgtc 5503297 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 cttcgccggcatgggcctcgccgt 264 |||||||||||| ||||||||||| Sbjct: 5018971 cttcgccggcatcggcctcgccgt 5018948 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 ggcggacgccgccggcgtcg 116 |||||||||||||||||||| Sbjct: 2572185 ggcggacgccgccggcgtcg 2572166
>gb|DQ174261.1| Streptomyces tsusimaensis strain ATCC 15141 putative conserved protein gene, partial cds; putative conserved protein, TetR-family regulatory protein, N5,N10-methylenetetrahydromethanopterin reductase, penicillin-binding protein, putative conserved protein, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, putative conserved proteins, necrosis inducing factor, conserved membrane-associated protein, transcriptional regulator, putative conserved protein, and discrete type II thioesterase genes, complete cds; valinomycin biosynthesis gene cluster, complete sequence; putative transposase gene, complete cds; and unknown gene Length = 39345 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 223 cccgctcgccctgcgggccttcgccgg 249 |||||||||||||| |||||||||||| Sbjct: 16771 cccgctcgccctgctggccttcgccgg 16797
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 85 gtcgatcgccgcggcggacgccgccgg 111 |||||||||||| |||||||||||||| Sbjct: 1525822 gtcgatcgccgccgcggacgccgccgg 1525848 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 tcgccgcggcggacgccgccg 110 ||||||||||||||||||||| Sbjct: 1299675 tcgccgcggcggacgccgccg 1299655
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 472 gctcgccacctcgctgcaccggcagat 498 |||||||||||||||||| |||||||| Sbjct: 412230 gctcgccacctcgctgcagcggcagat 412204
>ref|NM_210889.1| Eremothecium gossypii AFL013Wp (AFL013W), mRNA Length = 735 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 472 gctcgccacctcgctgcaccggcagat 498 |||||||||||||||||| |||||||| Sbjct: 592 gctcgccacctcgctgcagcggcagat 566
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 424 gctgctgctctgcctcgtgccg 445 |||||||||||||||||||||| Sbjct: 6561835 gctgctgctctgcctcgtgccg 6561856 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 tgctgtcgtcgatcgccgcggcgg 101 |||||||| ||||||||||||||| Sbjct: 8271141 tgctgtcgacgatcgccgcggcgg 8271118
>gb|AE005088.1| Halobacterium sp. NRC-1 section 119 of 170 of the complete genome Length = 11020 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 90 tcgccgcggcggacgccgccggcgtcggcg 119 |||||||| ||| ||||||||||||||||| Sbjct: 6914 tcgccgcgacggtcgccgccggcgtcggcg 6943
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 146 ctcccgccgccggccgacgtcgcgcg 171 ||||||| |||||||||||||||||| Sbjct: 1339032 ctcccgctgccggccgacgtcgcgcg 1339007
>gb|AY541063.1| Nocardia uniformis subsp. tsuyamanensis monocyclic beta-lactam antibiotic nocardicin A biosynthesis gene cluster, partial sequence Length = 33451 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 91 cgccgcggcggacgccgccggcgtc 115 ||||||||||| ||||||||||||| Sbjct: 413 cgccgcggcgggcgccgccggcgtc 437
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ctgaacgccgacccgctcgcc 232 ||||||||||||||||||||| Sbjct: 1230364 ctgaacgccgacccgctcgcc 1230344
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 91 cgccgcggcggacgccgccggcgtcggcg 119 |||||||||||||| |||||||| ||||| Sbjct: 12882085 cgccgcggcggacgtcgccggcgccggcg 12882113
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 91 cgccgcggcggacgccgccggcgtcggcg 119 |||||||||||||| |||||||| ||||| Sbjct: 120301 cgccgcggcggacgtcgccggcgccggcg 120329
>emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12 Length = 306250 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 241 cttcgccggcatgggcctcgccgtg 265 |||||||||||||||| |||||||| Sbjct: 288472 cttcgccggcatgggcatcgccgtg 288448
>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1356F10, complete sequence Length = 170681 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 gacgccgccggcgtcggcgtc 121 ||||||||||||||||||||| Sbjct: 138626 gacgccgccggcgtcggcgtc 138606
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 gcgccagcgtcgcgccccacg 356 ||||||||||||||||||||| Sbjct: 3852655 gcgccagcgtcgcgccccacg 3852635 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gccgccggcgtcggcgtcac 123 |||||||||||||||||||| Sbjct: 3608998 gccgccggcgtcggcgtcac 3609017
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 cagggacgtgatctcgcaggc 414 ||||||||||||||||||||| Sbjct: 142457 cagggacgtgatctcgcaggc 142477
>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0094H06, from chromosome 3, complete sequence Length = 118075 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 91 cgccgcggcggacgccgccggcgtcggcg 119 |||||||||||||| |||||||| ||||| Sbjct: 57424 cgccgcggcggacgtcgccggcgccggcg 57396
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 gacgccgccggcgtcggcgtc 121 ||||||||||||||||||||| Sbjct: 21615107 gacgccgccggcgtcggcgtc 21615087
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 436 cctcgtgccggccatgcagaacctgcacacggcgctg 472 |||||||||||| |||| |||||||||| | |||||| Sbjct: 19466845 cctcgtgccggcgatgcggaacctgcacgccgcgctg 19466881
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 91 cgccgcggcggacgccgccggcgtcggcg 119 |||||||||||||| |||||||| ||||| Sbjct: 12878848 cgccgcggcggacgtcgccggcgccggcg 12878876
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 cagggacgtgatctcgcaggc 414 ||||||||||||||||||||| Sbjct: 2919298 cagggacgtgatctcgcaggc 2919278 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 gtccacgccgccgtccgccg 557 |||||||||||||||||||| Sbjct: 3527786 gtccacgccgccgtccgccg 3527805
>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0410C01 Length = 138424 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 436 cctcgtgccggccatgcagaacctgcacacggcgctg 472 |||||||||||| |||| |||||||||| | |||||| Sbjct: 85254 cctcgtgccggcgatgcggaacctgcacgccgcgctg 85290
>dbj|AK120567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134A09, full insert sequence Length = 1536 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 gacgccgccggcgtcggcgtc 121 ||||||||||||||||||||| Sbjct: 742 gacgccgccggcgtcggcgtc 762
>emb|AJ871581.1| Streptomyces achromogenes subsp. rubradiris complete rubradirin gene cluster, strain NRRL 3061 Length = 105657 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 gatcgccgcggcggacgccgccggc 112 ||||||||||||| ||||||||||| Sbjct: 68667 gatcgccgcggcgcacgccgccggc 68643
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 gacgccgccggcgtcggcgtc 121 ||||||||||||||||||||| Sbjct: 21925306 gacgccgccggcgtcggcgtc 21925286
>gb|M73789.1|STMXYLAB Streptomyces rubiginosus xylose kinase and xylose isomerase genes, complete cds Length = 3060 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 95 gcggcggacgccgccggcgtc 115 ||||||||||||||||||||| Sbjct: 94 gcggcggacgccgccggcgtc 114
>ref|XM_466770.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2261 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ggacgccgccggcgtcggcg 119 |||||||||||||||||||| Sbjct: 182 ggacgccgccggcgtcggcg 201
>ref|NM_197244.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0062C05.21), mRNA Length = 675 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cctcccgccgccggccgacg 164 |||||||||||||||||||| Sbjct: 176 cctcccgccgccggccgacg 195
>ref|NM_190626.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1848 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 acgagcctcccgccgccggc 159 |||||||||||||||||||| Sbjct: 362 acgagcctcccgccgccggc 343
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 gccggccatgcagaacctgc 461 |||||||||||||||||||| Sbjct: 5115817 gccggccatgcagaacctgc 5115836
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cctcccgccgccggccgacg 164 |||||||||||||||||||| Sbjct: 87719 cctcccgccgccggccgacg 87700
>gb|AY658729.1| Synthetic construct Peudomonas aeruginosa clone FLH034873.01F PA3269 gene, partial cds Length = 855 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 289 cgtgccgcgcatcgccgacagcgt 312 |||||||||| ||||||||||||| Sbjct: 333 cgtgccgcgcttcgccgacagcgt 356
>gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E05, complete sequence Length = 196284 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cctcccgccgccggccgacg 164 |||||||||||||||||||| Sbjct: 24574 cctcccgccgccggccgacg 24555
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 cgcggcggacgccgccggcg 113 |||||||||||||||||||| Sbjct: 1521201 cgcggcggacgccgccggcg 1521182
>gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1131_E09, complete sequence Length = 94399 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cctcccgccgccggccgacg 164 |||||||||||||||||||| Sbjct: 90866 cctcccgccgccggccgacg 90847
>gb|AC095390.9| Rattus norvegicus 12 BAC CH230-7C24 (Children's Hospital Oakland Research Institute) complete sequence Length = 226532 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 cgcactccctcggcgtcctc 532 |||||||||||||||||||| Sbjct: 62384 cgcactccctcggcgtcctc 62403
>emb|Y13732.1|AEY13732 Alcaligenes eutrophus genes for ureases, ureD1, ureD2, ureA, ureB, and ORF1, ORF2 Length = 6740 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 cgtgccgcgcatcgccgacagcgt 312 ||||||||||| |||||||||||| Sbjct: 4043 cgtgccgcgcaccgccgacagcgt 4020
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ggacgccgccggcgtcggcg 119 |||||||||||||||||||| Sbjct: 940686 ggacgccgccggcgtcggcg 940667
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cgccctgcgggccttcgccg 248 |||||||||||||||||||| Sbjct: 1218067 cgccctgcgggccttcgccg 1218048
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 cctcgtgccggccatgcaga 455 |||||||||||||||||||| Sbjct: 45584 cctcgtgccggccatgcaga 45603
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 cctcgtgccggccatgcaga 455 |||||||||||||||||||| Sbjct: 38944 cctcgtgccggccatgcaga 38963
>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16 Length = 348942 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 cgcggcaccgtcctcgaccgcgtg 205 |||||||||| ||||||||||||| Sbjct: 316548 cgcggcaccggcctcgaccgcgtg 316571
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 cgcggcggacgccgccggcg 113 |||||||||||||||||||| Sbjct: 2855947 cgcggcggacgccgccggcg 2855928
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 gccggccatgcagaacctgc 461 |||||||||||||||||||| Sbjct: 5621077 gccggccatgcagaacctgc 5621096
>dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432B10 Length = 131918 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cctcccgccgccggccgacg 164 |||||||||||||||||||| Sbjct: 13974 cctcccgccgccggccgacg 13955
>dbj|AB210815.1| Oncorhynchus mykiss rtCYP19a gene for cytochrome P450 aromatase, exon 1, partial cds Length = 1990 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 3 cactccactgccagctgctgaactgaag 30 |||||||| |||||||||||||||||| Sbjct: 1741 cactccacgaccagctgctgaactgaag 1714
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 gatcgccgcggcggacgccgccgg 111 |||||||||||| ||||||||||| Sbjct: 3167897 gatcgccgcggcagacgccgccgg 3167920
>gb|AF403738.1|AF403738 Culex nigripalpus baculovirus, complete genome Length = 108252 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ttcctcgcccgcggcaccgt 192 |||||||||||||||||||| Sbjct: 63918 ttcctcgcccgcggcaccgt 63937
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 94 cgcggcggacgccgccggcgtcggcgtc 121 ||||||||||| ||| |||||||||||| Sbjct: 260354 cgcggcggacgtcgcgggcgtcggcgtc 260327
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 cgccctcgtgccgcgcatcgccga 306 |||||||| ||||||||||||||| Sbjct: 3993470 cgccctcgcgccgcgcatcgccga 3993447 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 cgccgcggcggacgccgccggcgt 114 ||||||||||| |||||||||||| Sbjct: 3432347 cgccgcggcggtcgccgccggcgt 3432370
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cgcggcggacgccgccggcg 113 |||||||||||||||||||| Sbjct: 382323 cgcggcggacgccgccggcg 382342
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cctcccgccgccggccgacg 164 |||||||||||||||||||| Sbjct: 18792298 cctcccgccgccggccgacg 18792279
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cctcccgccgccggccgacg 164 |||||||||||||||||||| Sbjct: 26173526 cctcccgccgccggccgacg 26173507
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ggacgccgccggcgtcggcg 119 |||||||||||||||||||| Sbjct: 24589062 ggacgccgccggcgtcggcg 24589081
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 acgagcctcccgccgccggc 159 |||||||||||||||||||| Sbjct: 36640580 acgagcctcccgccgccggc 36640599 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cctcccgccgccggccgacg 164 |||||||||||||||||||| Sbjct: 34516680 cctcccgccgccggccgacg 34516661 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 cgccgcggcggacgccgccg 110 |||||||||||||||||||| Sbjct: 32065104 cgccgcggcggacgccgccg 32065123
>gb|AF274288.1|AF274288 Culex nigripalpus baculovirus clone 19 putative envelope protein p74 gene, complete cds; and unknown gene Length = 3080 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 ttcctcgcccgcggcaccgt 192 |||||||||||||||||||| Sbjct: 2683 ttcctcgcccgcggcaccgt 2664
>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0512C01 Length = 176261 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 cgccgcggcggacgccgccg 110 |||||||||||||||||||| Sbjct: 106918 cgccgcggcggacgccgccg 106937
>gb|AE004749.1| Pseudomonas aeruginosa PAO1, section 310 of 529 of the complete genome Length = 16841 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 cgtgccgcgcatcgccgacagcgt 312 |||||||||| ||||||||||||| Sbjct: 6781 cgtgccgcgcttcgccgacagcgt 6758
>ref|XM_341100.2| PREDICTED: Rattus norvegicus Unc-51 like kinase 1 (C. elegans) (Ulk1), mRNA Length = 5363 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 cgcactccctcggcgtcctc 532 |||||||||||||||||||| Sbjct: 335 cgcactccctcggcgtcctc 316
>gb|AF235504.1|AF235504 Streptomyces hygroscopicus var. ascomyceticus FK520 biosynthetic gene cluster, partial sequence Length = 77534 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 458 ctgcacacggcgctgctcgccacctcgctgca 489 |||||| |||||||||||| |||| ||||||| Sbjct: 25529 ctgcacccggcgctgctcgtcaccgcgctgca 25498
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 acgagcctcccgccgccggc 159 |||||||||||||||||||| Sbjct: 113846 acgagcctcccgccgccggc 113865
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 101 gacgccgccggcgtcggcgtcacc 124 ||||||||| |||||||||||||| Sbjct: 58533 gacgccgcctgcgtcggcgtcacc 58556
>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0425G02 Length = 155432 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cctcccgccgccggccgacg 164 |||||||||||||||||||| Sbjct: 92399 cctcccgccgccggccgacg 92380
>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1014_H03 Length = 132696 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ggacgccgccggcgtcggcg 119 |||||||||||||||||||| Sbjct: 103163 ggacgccgccggcgtcggcg 103182
>dbj|AP004083.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_C01 Length = 124548 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ggacgccgccggcgtcggcg 119 |||||||||||||||||||| Sbjct: 33611 ggacgccgccggcgtcggcg 33630
>dbj|AK120867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025I17, full insert sequence Length = 2267 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cctcccgccgccggccgacg 164 |||||||||||||||||||| Sbjct: 432 cctcccgccgccggccgacg 413
>dbj|AK111828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064H19, full insert sequence Length = 2261 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ggacgccgccggcgtcggcg 119 |||||||||||||||||||| Sbjct: 182 ggacgccgccggcgtcggcg 201
>dbj|AK100337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081E01, full insert sequence Length = 2693 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 acgagcctcccgccgccggc 159 |||||||||||||||||||| Sbjct: 699 acgagcctcccgccgccggc 680
>dbj|AK071217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085L22, full insert sequence Length = 1301 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 acgagcctcccgccgccggc 159 |||||||||||||||||||| Sbjct: 378 acgagcctcccgccgccggc 359
>ref|NM_207848.1| Eremothecium gossypii AAL047Cp (AAL047C), mRNA Length = 1146 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 94 cgcggcggacgccgccggcgtcggcgtc 121 ||||||||||| ||| |||||||||||| Sbjct: 551 cgcggcggacgtcgcgggcgtcggcgtc 578
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 cctgcacacggcgctgctcg 476 |||||||||||||||||||| Sbjct: 5337280 cctgcacacggcgctgctcg 5337299
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 cgacgacgatgcacgcgccgatgc 68 |||||||||||| ||||||||||| Sbjct: 1008493 cgacgacgatgcgcgcgccgatgc 1008470 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 tgctgtcgtcgatcgccgcg 97 |||||||||||||||||||| Sbjct: 917141 tgctgtcgtcgatcgccgcg 917122
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 gacgccgccggcgtcggcgtcacc 124 |||||||||||| ||||||||||| Sbjct: 1186339 gacgccgccggcatcggcgtcacc 1186316
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgtcgcgcggttcctcgccc 182 |||||||||||||||||||| Sbjct: 989693 cgtcgcgcggttcctcgccc 989712
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 cggcgctgctcgccacctcg 484 |||||||||||||||||||| Sbjct: 479846 cggcgctgctcgccacctcg 479827
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cctcccgccgccggccgacg 164 |||||||||||||||||||| Sbjct: 18803152 cctcccgccgccggccgacg 18803133
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 ggcggacgccgccggcgtcg 116 |||||||||||||||||||| Sbjct: 6893169 ggcggacgccgccggcgtcg 6893150
>gb|AC122387.3| Mus musculus BAC clone RP24-76F22 from 6, complete sequence Length = 191058 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 gcgacgagcctcccgccgcc 156 |||||||||||||||||||| Sbjct: 59547 gcgacgagcctcccgccgcc 59566
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460E08 Length = 170021 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 cgccgcggcggacgccgccg 110 |||||||||||||||||||| Sbjct: 161831 cgccgcggcggacgccgccg 161850 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,261,189 Number of Sequences: 3902068 Number of extensions: 3261189 Number of successful extensions: 87552 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79875 Number of HSP's gapped (non-prelim): 7673 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)