>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I|
          Length = 226

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 3/129 (2%)
 Frame = +1

Query: 157 LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 336
           + FD+D+ +YP S  I+      I  +  DKL I      ++    YR YG  + GL ++
Sbjct: 8   IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGL-VL 66

Query: 337 GYDFDYDEFHASVHGKLPYEK-LKPDPVLRSLLISMPQRK--IIFTNSDEAHAATVLEKM 507
            ++ D  ++   V   LP EK +K D VLR +L+ + ++    IFTN+   HA  VL+ +
Sbjct: 67  HHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYL 126

Query: 508 GLEGCFEGI 534
           G+E CF+GI
Sbjct: 127 GIEDCFDGI 135

>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic|
           region
          Length = 321

 Score = 62.4 bits (150), Expect = 8e-10
 Identities = 37/132 (28%), Positives = 72/132 (54%), Gaps = 8/132 (6%)
 Frame = +1

Query: 163 FDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMGY 342
           FD+D+T+Y  S  + L  ++++ ++   +L  ++    ++    Y+EYG ++ GL     
Sbjct: 57  FDIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIESYYQEYGLSVKGLIKNKQ 116

Query: 343 DFDYDEFHASVHGKLPYEK-LKPDPVLRSLLISMPQRKI-------IFTNSDEAHAATVL 498
             D  +++  +   LP +  LKPD  LR LLI++ ++K+       +FTNS + HA   +
Sbjct: 117 IDDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNHAIRCV 176

Query: 499 EKMGLEGCFEGI 534
           + +G+   F+GI
Sbjct: 177 KILGIADLFDGI 188

>SSM1_YEAST (P53078) Protein SSM1|
          Length = 280

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
 Frame = +1

Query: 163 FDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMGY 342
           FD+D+ +Y  S  I+   +++I  +    L++       +    Y+EYG  + GL +M +
Sbjct: 60  FDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VMFH 118

Query: 343 DFDYDEFHASVHGKLPYEK-LKPDPVLRSLLISMPQ-----RKIIFTNSDEAHAATVLEK 504
             +  E++  V   LP +  LKPD  LR++L+ + Q     +  +FTN+ + HA   L  
Sbjct: 119 KVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRL 178

Query: 505 MGLEGCFEGI 534
           +G+   F+G+
Sbjct: 179 LGIADLFDGL 188

>AMO_PICAN (P12807) Peroxisomal copper amine oxidase (EC 1.4.3.6) (Methylamine|
           oxidase)
          Length = 692

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 171 HVKQQAVKFGSVGVGFHLHRLRLGSACNGMHMYLDA 64
           H ++ A+  G  G G+  + L LG  C G+  YLDA
Sbjct: 312 HQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDA 347

>CHMP7_MOUSE (Q8R1T1) Protein CHMP7|
          Length = 451

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
 Frame = +1

Query: 211 ACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMGYDFDYDEFHASVHGKLP 390
           A + +++D  ++K +     + ++C D   E   T+AG    G DFD +E    +   L 
Sbjct: 331 ALKLSMKDVTVEKAESLVDQIQELC-DTQDEVSQTLAGGVTNGLDFDSEELEKELDILLQ 389

Query: 391 YEKLKPDPVLRSLLISMPQRKIIFTNSD------EAHAATVLEKMGL 513
               +P       L+  PQ   ++TNS       +A     LEK+ L
Sbjct: 390 DTTTEP-----LSLLETPQETTLYTNSVPKPRILDAELEAELEKLSL 431

>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor|
           (EGF-like domain-containing protein 3) (Multiple
           EGF-like domain protein 3)
          Length = 1574

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -2

Query: 277 WGPGSPRSEVCPACSLGCSC----GMLS*FPSSVGRWCHPCQTAG 155
           WG G    E+CPAC  G SC    G     P  VG  C    +AG
Sbjct: 782 WGLGC--QEICPACEHGASCNPETGTCLCLPGFVGSRCQDTCSAG 824

>TNAP3_HUMAN (P21580) Tumor necrosis factor, alpha-induced protein 3 (EC|
           3.-.-.-) (Putative DNA-binding protein A20) (Zinc finger
           protein A20)
          Length = 790

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 204 QLSMPQEHPRLHAGQTSDRGEPGPQDVPR 290
           +L M  +HP    G  + RGEP P+D P+
Sbjct: 731 ELCMECQHPNQRMGPGAHRGEPAPEDPPK 759

>GPH_AGRT5 (Q8UEY9) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 233

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 352 YDEFHASVHGKLPYEKLKPDPVLRSLLISMPQRKI---IFTNSDEAHAATVLEKMGLEGC 522
           Y+ F      ++P E  +P P +   L ++ Q  I   + TN  E  A  +LEK+GL   
Sbjct: 78  YERFITHYRAEMPGES-RPYPGIIETLDALSQAGITLAVCTNKTEILAVPLLEKLGLTRY 136

Query: 523 FEGIIC 540
           F  I C
Sbjct: 137 FAAITC 142

>Y1655_PYRHO (O59346) Putative HAD-hydrolase PH1655 (EC 3.-.-.-)|
          Length = 241

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 157 LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 336
           + FD+DDT+   S    +A +  I++ +   L ++        ++L +EYG+        
Sbjct: 5   IFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFP----- 59

Query: 337 GYDFDY 354
            Y FDY
Sbjct: 60  -YHFDY 64

>TNAP3_MACFA (Q4R8W3) Tumor necrosis factor, alpha-induced protein 3 (EC|
           3.-.-.-)
          Length = 790

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 204 QLSMPQEHPRLHAGQTSDRGEPGPQDVPR 290
           +L M  +HP    G  + RGEP P+D P+
Sbjct: 731 ELCMECQHPNPRMGPGAHRGEPAPEDPPK 759

>Y1777_PYRFU (Q8U040) Putative HAD-hydrolase PF1777 (EC 3.-.-.-)|
          Length = 240

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 157 LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 336
           + FD+DDT+   S    +A +  I++ +   + ++        L+L +EYG+        
Sbjct: 7   IFFDLDDTLVDTSKLAEVARKNAIENMIRHGMPVDFDTAYNELLELIKEYGSNFP----- 61

Query: 337 GYDFDY 354
            Y FDY
Sbjct: 62  -YHFDY 66

>FBN3_HUMAN (Q75N90) Fibrillin-3 precursor|
          Length = 2809

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 298 CTNLGTSWGPGSPRSEVCPACSLG 227
           C  LG +WG    R E+ PAC+ G
Sbjct: 835 CATLGAAWGSPCERCEIDPACARG 858

>YUEB_BACSU (O32101) Bacteriophage SPP1 adsorption protein yueB (Bacteriophage|
            SPP1 receptor protein yueB)
          Length = 1076

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +1

Query: 289  DLYREYGTTMAGLKLMGYDFDYDEFHASVHGKLPYEKLKPDPVLRSLLISMPQRKIIFTN 468
            D+Y   G T+   +  GY +DY      + G++P EK++  P +  L+I +    +I   
Sbjct: 865  DVYGILGNTLVDGQNNGYVYDYLANPLKISGEVPEEKIQTVPPVVILVIVLISSLLIGYF 924

Query: 469  SDEAHAATVLEKMGLEG 519
            S     A +L K  L G
Sbjct: 925  SSYYQNAPLLVKGALFG 941

>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)|
            (Usher syndrome type IIa protein homolog)
          Length = 5193

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -2

Query: 256  SEVCPACSLGCSCGMLS*FPSSVGRWCHPCQTAGSQIWLRWRRIPSSQVEVGQCLQWHAH 77
            S +C + +  CSC      PS+ GR CH CQ    + + R+  +       G+C   H H
Sbjct: 957  SHICNSVTGQCSCHD----PSTTGRSCHQCQ----ESYFRFDPL------TGRCRPCHCH 1002

Query: 76   V 74
            V
Sbjct: 1003 V 1003

>Y1956_THETN (Q8R8N9) Protein TTE1956|
          Length = 458

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +1

Query: 253 QIEESLVPKMCLDLYREYGTTMAGLKLMGYDFDYDEFHASVHGKLPYEKLKPDPVLRSLL 432
           ++ E L+ K  L    ++GT +    +  +  D+   H S +G LP+EKL    V     
Sbjct: 107 EVSEELIKKYVLPKKLDHGTIVPLYFVTKHYPDFKLIHMS-YGFLPFEKLYEFGVAIKDA 165

Query: 433 ISMPQRKIIF-TNSDEAHAAT 492
           I+   R+++F  + D +H  T
Sbjct: 166 INKSDRRVVFIASGDLSHKLT 186

>AMO_SCHPO (O42890) Putative copper amine oxidase (EC 1.4.3.6)|
          Length = 794

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 180 GVIHVKQQAVKFGSVGVGFHLHRLRLGSACNGMHMYLDAE 61
           G  H ++ A   G  GVG+  + L     C G+  Y+DA+
Sbjct: 299 GHSHHRKHAYDLGEYGVGYRTNPLSFTCGCEGVIHYMDAD 338

>SYFB_PROMP (Q7V1J8) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 821

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = +1

Query: 106 PQPVKMESYANGAKFDCLLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMC 285
           P  ++ E+Y N +K +       +    L L   + C  NI++Y  D       ++P   
Sbjct: 432 PIVIRNENYENNSKLEKRYLTDTEITEKLKL---IGCTLNIKEYGWDV-----EIIPNRS 483

Query: 286 LDLYREYGTTMAGLKLMGYD-FDYDEFHASVHGKL 387
            DL RE        +L+GYD FD +  +    GKL
Sbjct: 484 QDLLREIDLIEEIARLIGYDMFDLNLPNPIKPGKL 518

>YB10_PYRAB (Q9V1B3) Putative HAD-hydrolase PYRAB05140 (EC 3.-.-.-)|
          Length = 238

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 157 LLFDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLM 336
           + FD+DDT+   +    LA R  I++ +   L ++        ++L +EYG+        
Sbjct: 5   IFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFP----- 59

Query: 337 GYDFDY 354
            + FDY
Sbjct: 60  -HHFDY 64

>UBP8_SCHPO (Q09738) Probable ubiquitin carboxyl-terminal hydrolase 8 (EC|
           3.1.2.15) (Ubiquitin thioesterase 8) (Ubiquitin-specific
           processing protease 8) (Deubiquitinating enzyme 8)
          Length = 449

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 22/92 (23%), Positives = 38/92 (41%)
 Frame = +1

Query: 163 FDMDDTIYPLSLGINLACRKNIQDYMLDKLQIEESLVPKMCLDLYREYGTTMAGLKLMGY 342
           F   D +Y   L       KNI+ +  D  ++ E     +CL+ YR+Y    A   L G 
Sbjct: 88  FGCQDYVYQTELETLRFKIKNIKAWQSDHKRLPEKYNQMVCLEAYRKYPPVCATAGLRG- 146

Query: 343 DFDYDEFHASVHGKLPYEKLKPDPVLRSLLIS 438
                   A+    +  + +  +P++R+L  S
Sbjct: 147 ---IQNLGATCFMSVILQSILHNPLVRNLFFS 175

>G6PD_BUCBP (Q89AI7) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) (G6PD)|
          Length = 490

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
 Frame = +1

Query: 241 LDKLQIEESLVPKMCLDLY----REYGTTMAGLKLMGYDFDYDEFHASVHGKLPYEKLKP 408
           L K ++  SL P   + +Y    +   T+   L L+  DF+Y +F+  +     YEKL  
Sbjct: 368 LSKNKLILSLQPNEAIKIYILNKKPKLTSQYKLDLITLDFNYSKFYKKIQLSDAYEKL-- 425

Query: 409 DPVLRSLLISMPQRKIIFTNSDEAHAA 489
                 LL SM   + +F   DE   A
Sbjct: 426 ------LLESMKGIQSLFVRRDEVELA 446

>DKK1_MOUSE (O54908) Dickkopf-related protein 1 precursor (Dkk-1) (Dickkopf-1)|
           (mDkk-1)
          Length = 272

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 45  LCLPSVQRRGTCACHCRHCPTSTCEDGI 128
           +CL   +RR  C  H   CP + C++GI
Sbjct: 113 ICLACRKRRKRCMTHAMCCPGNYCKNGI 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,515,830
Number of Sequences: 219361
Number of extensions: 1676766
Number of successful extensions: 5734
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5724
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)