Clone Name | bart41b08 |
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Clone Library Name | barley_pub |
>PRPX_HORVU (P16273) Pathogen-related protein| Length = 235 Score = 168 bits (426), Expect = 8e-42 Identities = 83/142 (58%), Positives = 98/142 (69%) Frame = +1 Query: 127 AEDSSGGDKYRSHLAGEGEKNTVWRHGAPPTYDAVNSLFEAGRTQEWPEGSLEETVQNAI 306 A GGDKYRS L G+GEK TVWRHGAPP YD VN LFE RT+EW EGS+EE VQ + Sbjct: 2 ASAEGGGDKYRSFLHGDGEKKTVWRHGAPPNYDLVNKLFEEERTKEWAEGSVEEKVQRLL 61 Query: 307 KTWEMELSHKARIEDFKSVSPGRFTLSVNGGRALTGEETLAMGSYNALLASPILPGAGAY 486 KTWEME+ HK R ED KSV+ ++ S NG + LT EE +AMG YNA LA+ + P Y Sbjct: 62 KTWEMEMVHKVRPEDQKSVNLKNYSASTNGLKPLTREEVMAMGGYNAFLATTLPPEHRIY 121 Query: 487 DAAAETFESSHDLFRSAFPRGF 552 D AE+ ES+ F +AFPRGF Sbjct: 122 DPEAESVESATSTFLTAFPRGF 143
>HIS6_RHORT (Q2RNA7) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 252 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%) Frame = +1 Query: 349 DFKSVSPGRFTLSVNGGRALTG-------EETLAMGSYNALLAS 459 D KSV PGRF + +GGR TG + +A+G+ LL S Sbjct: 130 DAKSVGPGRFEIFTHGGRKATGLDAVDWAKRMVALGAGEILLTS 173
>PTPA2_ASPOR (Q2UCL6) Serine/threonine-protein phosphatase 2A activator 2 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-2) (PPIase PTPA-2) (Rotamase PTPA-2) (Phosphotyrosyl phosphatase activator 2) Length = 422 Score = 30.0 bits (66), Expect = 4.6 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -2 Query: 115 SDQRSDTHAGSPRHAADGDHGGECCGL 35 +D TH+ HA DH G+CCG+ Sbjct: 371 TDGHDHTHSHDHAHAQHTDHFGDCCGI 397
>HFLC_VIBPA (P40606) Protein hflC (EC 3.4.-.-)| Length = 326 Score = 29.6 bits (65), Expect = 6.0 Identities = 24/75 (32%), Positives = 34/75 (45%) Frame = +1 Query: 202 HGAPPTYDAVNSLFEAGRTQEWPEGSLEETVQNAIKTWEMELSHKARIEDFKSVSPGRFT 381 H P +D V L +T + G + V + K ++ K RIEDF GR+ Sbjct: 53 HFKMPLFDRVKQLDARIQTMD---GRADRFVTSEKKDVIIDSYVKWRIEDF-----GRYY 104 Query: 382 LSVNGGRALTGEETL 426 L+ GG +LT E L Sbjct: 105 LATGGGNSLTAEALL 119
>HFLC_VIBCH (Q9KV08) Protein hflC (EC 3.4.-.-)| Length = 326 Score = 29.6 bits (65), Expect = 6.0 Identities = 24/75 (32%), Positives = 35/75 (46%) Frame = +1 Query: 202 HGAPPTYDAVNSLFEAGRTQEWPEGSLEETVQNAIKTWEMELSHKARIEDFKSVSPGRFT 381 H P +D V +L +T + G + V + K ++ K RIEDF G++ Sbjct: 53 HFKMPLFDRVKTLDARIQTMD---GRSDRFVTSEKKDVIIDTYVKWRIEDF-----GQYY 104 Query: 382 LSVNGGRALTGEETL 426 L+ GG ALT E L Sbjct: 105 LATGGGNALTAEALL 119
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 29.6 bits (65), Expect = 6.0 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +1 Query: 121 GQAEDSSGGDKYRSHLAGEGEKNTVWRHGAPPTYD 225 G+AE GG G GE+ RHG PP YD Sbjct: 997 GEAEGPDGGG------GGGGERRRRHRHGPPPAYD 1025
>GPX3_MACFU (Q4AEH4) Glutathione peroxidase 3 precursor (EC 1.11.1.9) (GSHPx-3)| (GPx-3) (Plasma glutathione peroxidase) (GSHPx-P) Length = 226 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +1 Query: 88 QRACLISDLMAGQAEDSSGGDKYRSHLAGEGEKNTVWRHGA 210 Q +CL+S L+AG S G DK + G G T++ +GA Sbjct: 6 QASCLLSLLLAGFLPQSRGQDKSKMDCHG-GVSGTIYEYGA 45
>GPX3_CEBAP (Q4AEH3) Glutathione peroxidase 3 precursor (EC 1.11.1.9) (GSHPx-3)| (GPx-3) (Plasma glutathione peroxidase) (GSHPx-P) Length = 226 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +1 Query: 88 QRACLISDLMAGQAEDSSGGDKYRSHLAGEGEKNTVWRHGA 210 Q +CL+S L+AG S G DK + G G T++ +GA Sbjct: 6 QASCLLSLLLAGFLPQSRGQDKSKMDCHG-GVSGTIYEYGA 45
>OLEE1_BETVE (O49813) Olee1-like protein precursor| Length = 166 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -2 Query: 151 CRRRRNPLLVPPSDQRSDTHAGSPRHAADGDHGGECC 41 CR R L+ SD +D +G+ R DGDH E C Sbjct: 59 CRNREGGTLIYSSDSETDK-SGTYRIPVDGDHEEEIC 94
>HIS6_RHOS4 (P50937) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 253 Score = 29.3 bits (64), Expect = 7.9 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +1 Query: 349 DFKSVSPGRFTLSVNGGRALTGEETLA 429 D K+V+PGR+ + +GGR TG + +A Sbjct: 130 DAKTVAPGRWEIFTHGGRRATGIDAVA 156 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.130 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,449,180 Number of Sequences: 219361 Number of extensions: 1225982 Number of successful extensions: 3290 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3207 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3290 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)