ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart41b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRPX_HORVU (P16273) Pathogen-related protein 168 8e-42
2HIS6_RHORT (Q2RNA7) Imidazole glycerol phosphate synthase subuni... 32 1.2
3PTPA2_ASPOR (Q2UCL6) Serine/threonine-protein phosphatase 2A act... 30 4.6
4HFLC_VIBPA (P40606) Protein hflC (EC 3.4.-.-) 30 6.0
5HFLC_VIBCH (Q9KV08) Protein hflC (EC 3.4.-.-) 30 6.0
6CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel ... 30 6.0
7GPX3_MACFU (Q4AEH4) Glutathione peroxidase 3 precursor (EC 1.11.... 29 7.9
8GPX3_CEBAP (Q4AEH3) Glutathione peroxidase 3 precursor (EC 1.11.... 29 7.9
9OLEE1_BETVE (O49813) Olee1-like protein precursor 29 7.9
10HIS6_RHOS4 (P50937) Imidazole glycerol phosphate synthase subuni... 29 7.9

>PRPX_HORVU (P16273) Pathogen-related protein|
          Length = 235

 Score =  168 bits (426), Expect = 8e-42
 Identities = 83/142 (58%), Positives = 98/142 (69%)
 Frame = +1

Query: 127 AEDSSGGDKYRSHLAGEGEKNTVWRHGAPPTYDAVNSLFEAGRTQEWPEGSLEETVQNAI 306
           A    GGDKYRS L G+GEK TVWRHGAPP YD VN LFE  RT+EW EGS+EE VQ  +
Sbjct: 2   ASAEGGGDKYRSFLHGDGEKKTVWRHGAPPNYDLVNKLFEEERTKEWAEGSVEEKVQRLL 61

Query: 307 KTWEMELSHKARIEDFKSVSPGRFTLSVNGGRALTGEETLAMGSYNALLASPILPGAGAY 486
           KTWEME+ HK R ED KSV+   ++ S NG + LT EE +AMG YNA LA+ + P    Y
Sbjct: 62  KTWEMEMVHKVRPEDQKSVNLKNYSASTNGLKPLTREEVMAMGGYNAFLATTLPPEHRIY 121

Query: 487 DAAAETFESSHDLFRSAFPRGF 552
           D  AE+ ES+   F +AFPRGF
Sbjct: 122 DPEAESVESATSTFLTAFPRGF 143



to top

>HIS6_RHORT (Q2RNA7) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 252

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
 Frame = +1

Query: 349 DFKSVSPGRFTLSVNGGRALTG-------EETLAMGSYNALLAS 459
           D KSV PGRF +  +GGR  TG       +  +A+G+   LL S
Sbjct: 130 DAKSVGPGRFEIFTHGGRKATGLDAVDWAKRMVALGAGEILLTS 173



to top

>PTPA2_ASPOR (Q2UCL6) Serine/threonine-protein phosphatase 2A activator 2 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-2)
           (PPIase PTPA-2) (Rotamase PTPA-2) (Phosphotyrosyl
           phosphatase activator 2)
          Length = 422

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 115 SDQRSDTHAGSPRHAADGDHGGECCGL 35
           +D    TH+    HA   DH G+CCG+
Sbjct: 371 TDGHDHTHSHDHAHAQHTDHFGDCCGI 397



to top

>HFLC_VIBPA (P40606) Protein hflC (EC 3.4.-.-)|
          Length = 326

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 24/75 (32%), Positives = 34/75 (45%)
 Frame = +1

Query: 202 HGAPPTYDAVNSLFEAGRTQEWPEGSLEETVQNAIKTWEMELSHKARIEDFKSVSPGRFT 381
           H   P +D V  L    +T +   G  +  V +  K   ++   K RIEDF     GR+ 
Sbjct: 53  HFKMPLFDRVKQLDARIQTMD---GRADRFVTSEKKDVIIDSYVKWRIEDF-----GRYY 104

Query: 382 LSVNGGRALTGEETL 426
           L+  GG +LT E  L
Sbjct: 105 LATGGGNSLTAEALL 119



to top

>HFLC_VIBCH (Q9KV08) Protein hflC (EC 3.4.-.-)|
          Length = 326

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 24/75 (32%), Positives = 35/75 (46%)
 Frame = +1

Query: 202 HGAPPTYDAVNSLFEAGRTQEWPEGSLEETVQNAIKTWEMELSHKARIEDFKSVSPGRFT 381
           H   P +D V +L    +T +   G  +  V +  K   ++   K RIEDF     G++ 
Sbjct: 53  HFKMPLFDRVKTLDARIQTMD---GRSDRFVTSEKKDVIIDTYVKWRIEDF-----GQYY 104

Query: 382 LSVNGGRALTGEETL 426
           L+  GG ALT E  L
Sbjct: 105 LATGGGNALTAEALL 119



to top

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 121  GQAEDSSGGDKYRSHLAGEGEKNTVWRHGAPPTYD 225
            G+AE   GG        G GE+    RHG PP YD
Sbjct: 997  GEAEGPDGGG------GGGGERRRRHRHGPPPAYD 1025



to top

>GPX3_MACFU (Q4AEH4) Glutathione peroxidase 3 precursor (EC 1.11.1.9) (GSHPx-3)|
           (GPx-3) (Plasma glutathione peroxidase) (GSHPx-P)
          Length = 226

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 88  QRACLISDLMAGQAEDSSGGDKYRSHLAGEGEKNTVWRHGA 210
           Q +CL+S L+AG    S G DK +    G G   T++ +GA
Sbjct: 6   QASCLLSLLLAGFLPQSRGQDKSKMDCHG-GVSGTIYEYGA 45



to top

>GPX3_CEBAP (Q4AEH3) Glutathione peroxidase 3 precursor (EC 1.11.1.9) (GSHPx-3)|
           (GPx-3) (Plasma glutathione peroxidase) (GSHPx-P)
          Length = 226

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 88  QRACLISDLMAGQAEDSSGGDKYRSHLAGEGEKNTVWRHGA 210
           Q +CL+S L+AG    S G DK +    G G   T++ +GA
Sbjct: 6   QASCLLSLLLAGFLPQSRGQDKSKMDCHG-GVSGTIYEYGA 45



to top

>OLEE1_BETVE (O49813) Olee1-like protein precursor|
          Length = 166

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 151 CRRRRNPLLVPPSDQRSDTHAGSPRHAADGDHGGECC 41
           CR R    L+  SD  +D  +G+ R   DGDH  E C
Sbjct: 59  CRNREGGTLIYSSDSETDK-SGTYRIPVDGDHEEEIC 94



to top

>HIS6_RHOS4 (P50937) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 253

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 349 DFKSVSPGRFTLSVNGGRALTGEETLA 429
           D K+V+PGR+ +  +GGR  TG + +A
Sbjct: 130 DAKTVAPGRWEIFTHGGRRATGIDAVA 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.130    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,449,180
Number of Sequences: 219361
Number of extensions: 1225982
Number of successful extensions: 3290
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3290
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
to top