Clone Information

BLAST Search Result

Clone Name	bart41b03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1	32	0.86
2	AIPL1_PANPA (Q95MN9) Aryl-hydrocarbon-interacting protein-like 1	31	1.9
3	AIPL1_HUMAN (Q9NZN9) Aryl-hydrocarbon-interacting protein-like 1	31	1.9
4	NUP62_MOUSE (Q63850) Nuclear pore glycoprotein p62 (62 kDa nucle...	31	2.5
5	SUV92_MOUSE (Q9EQQ0) Histone-lysine N-methyltransferase, H3 lysi...	31	2.5
6	FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related p...	31	2.5
7	SYI1_BACHK (Q6HER9) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Is...	31	2.5
8	SYI1_BACCZ (Q636D1) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Is...	31	2.5
9	SYI1_BACC1 (Q732H4) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Is...	31	2.5
10	SYI1_BACAN (Q81WE4) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Is...	31	2.5
11	HDC_DROME (Q9N2M8) Headcase protein [Contains: Headcase short pr...	31	2.5
12	LPHN3_HUMAN (Q9HAR2) Latrophilin-3 precursor (Calcium-independen...	30	3.3
13	GLGB_BACSU (P39118) 1,4-alpha-glucan branching enzyme (EC 2.4.1....	30	3.3
14	TATB_XANAC (Q8PEX3) Sec-independent protein translocase protein ...	30	3.3
15	KSR1_MOUSE (Q61097) Kinase suppressor of ras-1 (Kinase suppresso...	30	3.3
16	SYI_GEOKA (Q5L0V9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	30	3.3
17	FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead...	30	4.3
18	RAD52_ASHGO (Q756F4) DNA repair and recombination protein RAD52	30	4.3
19	TCRG1_MOUSE (Q8CGF7) Transcription elongation regulator 1 (TATA ...	30	4.3
20	VGP_MABVP (P35254) Structural glycoprotein precursor (Virion spi...	30	5.6
21	INHA_SHEEP (P38440) Inhibin alpha chain precursor (Fragment)	30	5.6
22	INHA_BOVIN (P07994) Inhibin alpha chain precursor	30	5.6
23	GWT1_CRYNV (Q873N0) GPI-anchored wall transfer protein 1 (EC 2.3...	30	5.6
24	Y3447_MYCBO (P65082) Hypothetical protein Mb3447c	30	5.6
25	Y3413_MYCTU (P65081) Hypothetical protein Rv3413c/MT3522	30	5.6
26	SYI_METTM (P26499) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	30	5.6
27	LPHN3_MOUSE (Q80TS3) Latrophilin-3 (Lectomedin-3) (Fragment)	30	5.6
28	ESRB2_CARAU (Q9IAL9) Estrogen receptor beta-2 (ER-beta-2)	30	5.6
29	GON2_TUPGB (Q95336) Progonadoliberin-2 precursor (Progonadoliber...	30	5.6
30	FUMH_MACFA (Q60HF9) Fumarate hydratase, mitochondrial precursor ...	30	5.6
31	PACC_NEUCR (Q7RVQ8) pH-response transcription factor pacC/RIM101	30	5.6
32	VGP_MABVM (P35253) Structural glycoprotein precursor (Virion spi...	29	7.3
33	TF2LX_PONPY (Q8MIB8) Homeobox protein TGIF2LX (TGFB-induced fact...	29	7.3
34	STB3_ASHGO (Q750U1) Protein STB3	29	7.3
35	Y309_MYCGE (P47551) Hypothetical lipoprotein MG309 precursor	29	9.5
36	GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region ge...	29	9.5
37	RNH2_RHORT (Q2RPE1) Ribonuclease HII (EC 3.1.26.4) (RNase HII)	29	9.5
38	GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	9.5
39	SYI_BACSU (Q45477) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	29	9.5
40	SYI1_BACCR (Q819R4) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Is...	29	9.5
41	TEGP_BHV1S (Q08098) Probable tegument protein	29	9.5
42	TF2LX_MIOTA (Q8MID1) Homeobox protein TGIF2LX (TGFB-induced fact...	29	9.5
43	TF2LX_MACMU (Q8MID6) Homeobox protein TGIF2LX (TGFB-induced fact...	29	9.5
44	TF2LX_MACFA (Q8MID8) Homeobox protein TGIF2LX (TGFB-induced fact...	29	9.5
45	TERT_MOUSE (O70372) Telomerase reverse transcriptase (EC 2.7.7.4...	29	9.5
46	SYI_SYNPX (Q7U9G9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	29	9.5
47	HLF_MOUSE (Q8BW74) Hepatic leukemia factor	29	9.5

>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 32.3 bits (72), Expect = 0.86
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 189 SLGIVSSSARPPTPKPSQTVIRP--HAAHLTA-ASSSVPASSNGTGTSYPRSPPHDL 350
           S G  +S++ PP P PS    RP      L+A A   +P  SNGT +S P SPP  +
Sbjct: 220 SAGTPTSTSAPPIP-PSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPI 275

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>AIPL1_PANPA (Q95MN9) Aryl-hydrocarbon-interacting protein-like 1|
          Length = 384

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 189 SLGIVSSSARPPTPKPSQTVIRPHAAHLTAASSSVPASSNG-TGTSYPRSPPHDL 350
           S G     A PPT  P+Q+   P A    A S+ + A     T T  P SP H L
Sbjct: 328 SQGATQPPAEPPTEPPAQSSTEPPAEPPPAPSAELSAGPPAETATEPPPSPGHSL 382

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>AIPL1_HUMAN (Q9NZN9) Aryl-hydrocarbon-interacting protein-like 1|
          Length = 384

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 189 SLGIVSSSARPPTPKPSQTVIRPHAAHLTAASSSVPASSNG-TGTSYPRSPPHDL 350
           S G     A PPT  P+Q+   P A   TA S+ + A       T  P SP H L
Sbjct: 328 SQGATQPPAEPPTEPPAQSSTEPPAEPPTAPSAELSAGPPAEPATEPPPSPGHSL 382

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>NUP62_MOUSE (Q63850) Nuclear pore glycoprotein p62 (62 kDa nucleoporin)|
          Length = 526

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 22/71 (30%)
 Frame = +3

Query: 183 GYSLGIVSSSARPP----TPKPSQTVI-------RPHAAHLTAASSS-----------VP 296
           G+SLG V SSA+P     +P    T++       +P AA  TAA++S            P
Sbjct: 172 GFSLGSVGSSAQPTALSGSPFTPATLVTTTAGATQPAAAAPTAATTSAGSTLFASIAAAP 231

Query: 297 ASSNGTGTSYP 329
           ASS+ TG S P
Sbjct: 232 ASSSATGLSLP 242

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>SUV92_MOUSE (Q9EQQ0) Histone-lysine N-methyltransferase, H3 lysine-9 specific 2|
           (EC 2.1.1.43) (Histone H3-K9 methyltransferase 2)
           (H3-K9-HMTase 2) (Suppressor of variegation 3-9 homolog
           2) (Su(var)3-9 homolog 2)
          Length = 477

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 19/53 (35%), Positives = 22/53 (41%)
 Frame = +3

Query: 219 PPTPKPSQTVIRPHAAHLTAASSSVPASSNGTGTSYPRSPPHDLFRFGDECGQ 377
           PP PK  +T  R  A  LTA  S   A     G+    S       FGDEC +
Sbjct: 24  PPRPKARRTARRRRAETLTARRSRPSAGERRAGSQRAWSGAPRAAVFGDECAR 76

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>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)|
           (Forkhead-related transcription factor 9) (FREAC-9)
          Length = 497

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
 Frame = +3

Query: 174 FSVGYSLGIVSSSARPPTPKP-SQTVIRPHAAHLTAASSSVPASSN---GTGTSYPRSPP 341
           +  GY L + +  A PP P P       PHA    AA+++ P   +   G   + P  PP
Sbjct: 266 YGYGYGLALPAYGAPPPGPAPHPHPHPHPHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPP 325

Query: 342 -HDLFRFGDECGQPVPA 389
              +F        P PA
Sbjct: 326 TASVFAGAGSAPAPAPA 342

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>SYI1_BACHK (Q6HER9) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase 1) (IleRS 1)
          Length = 921

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 397 TSSAGTGCPHSSPNRNRS---CGGERG*LVPVPFDEAGTLEEAA 275
           T+ AGTGC H++P         G + G  V  P D+ G L E A
Sbjct: 314 TTDAGTGCVHTAPGHGEDDFVVGKKYGLEVLCPVDDKGVLTEEA 357

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>SYI1_BACCZ (Q636D1) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase 1) (IleRS 1)
          Length = 921

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 397 TSSAGTGCPHSSPNRNRS---CGGERG*LVPVPFDEAGTLEEAA 275
           T+ AGTGC H++P         G + G  V  P D+ G L E A
Sbjct: 314 TTDAGTGCVHTAPGHGEDDFIVGKKYGLEVLCPVDDKGVLTEEA 357

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>SYI1_BACC1 (Q732H4) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase 1) (IleRS 1)
          Length = 921

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 397 TSSAGTGCPHSSPNRNRS---CGGERG*LVPVPFDEAGTLEEAA 275
           T+ AGTGC H++P         G + G  V  P D+ G L E A
Sbjct: 314 TTDAGTGCVHTAPGHGEDDFIVGKKYGLEVLCPVDDKGVLTEEA 357

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>SYI1_BACAN (Q81WE4) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase 1) (IleRS 1)
          Length = 921

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 397 TSSAGTGCPHSSPNRNRS---CGGERG*LVPVPFDEAGTLEEAA 275
           T+ AGTGC H++P         G + G  V  P D+ G L E A
Sbjct: 314 TTDAGTGCVHTAPGHGEDDFIVGKKYGLEVLCPVDDKGVLTEEA 357

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>HDC_DROME (Q9N2M8) Headcase protein [Contains: Headcase short protein]|
          Length = 1080

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +3

Query: 216  RPPTPKPSQTVIRPHAAHLTAASSSVPASSNGTGTSYPRSPPHDLFRFGDECGQPVPA-- 389
            +PP  +  Q   +PHAA  TA+ +S  +SSNG   S+   P  +++      GQ  PA  
Sbjct: 943  QPPQQQVPQQ--QPHAASPTASLTSSSSSSNGWSASHYGKP--NIWELPGSTGQRTPASS 998

Query: 390  EDVVKTLLDKL 422
             D+   LL  L
Sbjct: 999  HDIFTDLLCNL 1009

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>LPHN3_HUMAN (Q9HAR2) Latrophilin-3 precursor (Calcium-independent|
           alpha-latrotoxin receptor 3) (Lectomedin-3)
          Length = 1447

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
 Frame = +3

Query: 225 TPKPSQTVIRPHAAHLTAASSSVPASSNGTGTSYPRSPPHDLFRFGDECGQPVPAEDV-V 401
           TP P+  V+     HL +ASS +PA          R       R G    QP PA  + V
Sbjct: 469 TPSPAVEVLDDMTTHLPSASSQIPALEESCEAVEAREIMWFKTRQGQIAKQPCPAGTIGV 528

Query: 402 KTLL----DKLFDGESP 440
            T L    D ++D + P
Sbjct: 529 STYLCLAPDGIWDPQGP 545

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>GLGB_BACSU (P39118) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 627

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +3

Query: 309 GTGTSYPRS---PPHDLFRFGDECGQ 377
           GTG   P S   PPHDL +F DEC Q
Sbjct: 206 GTGYYSPTSRFGPPHDLMKFVDECHQ 231

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>TATB_XANAC (Q8PEX3) Sec-independent protein translocase protein tatB homolog|
          Length = 208

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 12/58 (20%)
 Frame = +3

Query: 201 VSSSARPPTPKPSQTVI---------RPHAAHLTAAS---SSVPASSNGTGTSYPRSP 338
           V + A+P  P P QT++          PHAAHL +A    + VP  +     S P +P
Sbjct: 143 VIAQAQPIAPAPHQTLVPAPHDAIVPAPHAAHLASAPEPVAVVPVDAGTPAASMPSAP 200

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>KSR1_MOUSE (Q61097) Kinase suppressor of ras-1 (Kinase suppressor of ras)|
           (mKSR1) (Hb protein)
          Length = 873

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +3

Query: 204 SSSARPPTPKPSQTVIRPHAAHLTAASSSVPASSNGTGTSYPRSPPHDL 350
           SS+  PP P P Q   R     ++A S + P SS    T     P  D+
Sbjct: 454 SSATTPPNPSPGQRDSRFSFPDISACSQAAPLSSTADSTRLDDQPKTDV 502

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>SYI_GEOKA (Q5L0V9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 924

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 397 TSSAGTGCPHSSPNRNRS---CGGERG*LVPVPFDEAGTLEEAA 275
           T+ AGTGC H++P         G + G  V  P DE G + E A
Sbjct: 314 TTDAGTGCVHTAPGHGEDDFLVGQKYGLPVLCPVDERGYMTEEA 357

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>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)|
           (P-Frk)
          Length = 375

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 210 SARPPTPKPSQTVIRPHAAHLTAASSSVPA 299
           +A PP P P      PHA HL AA++  PA
Sbjct: 278 AAPPPPPPPPHPHPHPHAHHLHAAAAPPPA 307

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>RAD52_ASHGO (Q756F4) DNA repair and recombination protein RAD52|
          Length = 435

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 219 PPTPKPSQTVIRPHAAHLTAASSSVPASSNGTGTSYPRSPPHDLFRFGDE 368
           PP P+P    +RP AAH   A S  P     +  +       D F F DE
Sbjct: 199 PPAPRPG--AMRPEAAHAAPAPSEPPLERPRSSENDQEDLLDDSFMFSDE 246

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>TCRG1_MOUSE (Q8CGF7) Transcription elongation regulator 1 (TATA box-binding|
           protein-associated factor 2S) (Transcription factor
           CA150) (p144) (Formin-binding protein 28) (FBP 28)
          Length = 1100

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 21/55 (38%), Positives = 25/55 (45%)
 Frame = +3

Query: 177 SVGYSLGIVSSSARPPTPKPSQTVIRPHAAHLTAASSSVPASSNGTGTSYPRSPP 341
           +V  +   VS SA  PT  P QTV +PH   L  A   VP S      + P  PP
Sbjct: 311 AVSVATPTVSVSAPAPTATPVQTVPQPHPQTLPPA---VPHSVPQPAAAIPAFPP 362

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>VGP_MABVP (P35254) Structural glycoprotein precursor (Virion spike|
           glycoprotein)
          Length = 681

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 207 SSARPPTPKPSQTVIRPHAAHLTAASSSVPASSNGTGTSYPRSPPHD 347
           SS  PPTP P  +  +    +   +  +V   +    T+ P  PPH+
Sbjct: 291 SSTMPPTPSPQPSTPQQEGNNTDHSQGTVTEPNKTNTTAQPSMPPHN 337

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>INHA_SHEEP (P38440) Inhibin alpha chain precursor (Fragment)|
          Length = 265

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 182 WLLARHRLVVRPPAHAQAVADCHTAA 259
           W  A  RL+ RPP    A ADCH AA
Sbjct: 140 WSPAALRLLQRPPEEPAAHADCHRAA 165

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>INHA_BOVIN (P07994) Inhibin alpha chain precursor|
          Length = 360

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 182 WLLARHRLVVRPPAHAQAVADCHTAA 259
           W  A  RL+ RPP    A ADCH AA
Sbjct: 235 WSPAALRLLQRPPEEPAAHADCHRAA 260

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>GWT1_CRYNV (Q873N0) GPI-anchored wall transfer protein 1 (EC 2.3.-.-)|
           (Inositol acyltransferase GWT1)
          Length = 598

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 171 VFSVGYSLGIVSS---SARPPTPKPSQTVIRPHAAHLT 275
           V S  +SLG+VS+   S  PPTP PS   +  H   LT
Sbjct: 267 VGSFVFSLGLVSTKSLSPPPPTPTPSSPALNSHIIPLT 304

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>Y3447_MYCBO (P65082) Hypothetical protein Mb3447c|
          Length = 299

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
 Frame = +3

Query: 177 SVGYSLGIVSSSARPPTP-------KPSQTV-----IRPHAAHLTAASSSVPASSNGTGT 320
           SVG S   ++    PPTP       +PS +        P++    AAS S P+S    G+
Sbjct: 212 SVGNSWTPLAPVVEPPTPPTPASAAEPSMSAGVSESPMPNSTSTVAASPSTPSSKPEPGS 271

Query: 321 SYPRSPPHDLFRFGDECGQPVPAEDVVKT 407
             P   P D     +  GQP P   V  T
Sbjct: 272 IDPSLEPAD--EATNPAGQPAPETPVSPT 298

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>Y3413_MYCTU (P65081) Hypothetical protein Rv3413c/MT3522|
          Length = 299

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
 Frame = +3

Query: 177 SVGYSLGIVSSSARPPTP-------KPSQTV-----IRPHAAHLTAASSSVPASSNGTGT 320
           SVG S   ++    PPTP       +PS +        P++    AAS S P+S    G+
Sbjct: 212 SVGNSWTPLAPVVEPPTPPTPASAAEPSMSAGVSESPMPNSTSTVAASPSTPSSKPEPGS 271

Query: 321 SYPRSPPHDLFRFGDECGQPVPAEDVVKT 407
             P   P D     +  GQP P   V  T
Sbjct: 272 IDPSLEPAD--EATNPAGQPAPETPVSPT 298

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>SYI_METTM (P26499) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1044

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 397 TSSAGTGCPHSSPN---RNRSCGGERG*LVPVPFDEAGTLEEAA 275
           T + GTGC H++P     +   G E G  V  P DEAG   E A
Sbjct: 307 TLTEGTGCVHTAPGHGPEDFEIGKEYGLPVFCPVDEAGVFTEDA 350

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>LPHN3_MOUSE (Q80TS3) Latrophilin-3 (Lectomedin-3) (Fragment)|
          Length = 1189

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
 Frame = +3

Query: 225 TPKPSQTVIRPHAAHLTAASSSVPASSNGTGTSYPRSPPHDLFRFGDECGQPVPAEDV-V 401
           TP P+  V+     HL +A+S +PA          R       R G    QP PA  + V
Sbjct: 189 TPSPAVEVLDDVTTHLPSAASQIPAMEESCEAVEAREIMWFKTRQGQVAKQPCPAGTIGV 248

Query: 402 KTLL----DKLFDGESP 440
            T L    D ++D + P
Sbjct: 249 STYLCLAPDGIWDPQGP 265

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>ESRB2_CARAU (Q9IAL9) Estrogen receptor beta-2 (ER-beta-2)|
          Length = 610

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 324 YPRSPPHDLFRFGDE---CGQPVPAEDVVKTLLD 416
           +P SP H LF  GD    CGQ +  E +V  +L+
Sbjct: 279 FPLSPTHPLFPLGDRAEGCGQNLSPEQLVNCILE 312

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>GON2_TUPGB (Q95336) Progonadoliberin-2 precursor (Progonadoliberin II)|
           [Contains: Gonadoliberin-2 (Gonadoliberin II)
           (Luteinizing hormone-releasing hormone II) (LH-RH II)
           (Gonadotropin-releasing hormone II) (GnRH II) (Luliberin
           II); GnRH-associated pepti
          Length = 114

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 20/66 (30%), Positives = 26/66 (39%)
 Frame = +3

Query: 207 SSARPPTPKPSQTVIRPHAAHLTAASSSVPASSNGTGTSYPRSPPHDLFRFGDECGQPVP 386
           S+ RPP P  +QT     +A L +   SVP     T     R   H +       G P P
Sbjct: 48  SALRPPAPSAAQTAHSFRSAALASPEDSVPWEGRTTAGWSLRRKQHLMRTLLSAAGAPRP 107

Query: 387 AEDVVK 404
           A   +K
Sbjct: 108 AAVPIK 113

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>FUMH_MACFA (Q60HF9) Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2)|
           (Fumarase)
          Length = 510

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +2

Query: 182 WLLARHRLVVRPPAHAQAVA 241
           WLLAR R +VRPPA A A A
Sbjct: 6   WLLARSRRLVRPPASALASA 25

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>PACC_NEUCR (Q7RVQ8) pH-response transcription factor pacC/RIM101|
          Length = 621

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 195 GIVSSSARPPTPKPSQTVIRPHAAHLTAASSSVPASSNGTGTS 323
           G V+ +   P P P+QT   P  A     +++  AS+NGT  +
Sbjct: 10  GTVNGANAAPAPAPAQTTPTPAPATAATPTTAPAASANGTAAN 52

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>VGP_MABVM (P35253) Structural glycoprotein precursor (Virion spike|
           glycoprotein)
          Length = 681

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 207 SSARPPTPKPSQTVIRPHAAHLTAASSSVPASSNGTGTSYPRSPPHD 347
           SS  PPTP P  +  +    +   +  +V        T+ P  PPH+
Sbjct: 291 SSTMPPTPSPQPSTPQQGGNNTNHSQDAVTELDKNNTTAQPSMPPHN 337

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>TF2LX_PONPY (Q8MIB8) Homeobox protein TGIF2LX (TGFB-induced factor 2-like|
           protein, X-linked) (TGF(beta)induced transcription
           factor 2-like protein) (TGIF-like on the X)
          Length = 241

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 258 HAAHLTAASSSVPASSNGTGTSYPRSPPHDLFRFGDECGQPVP 386
           HA HL +  +SVPASS  +G    +S P      G   G+ +P
Sbjct: 131 HATHLQSTDASVPASSGPSGPDNVQSLPLWPLPKGQMSGEKLP 173

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>STB3_ASHGO (Q750U1) Protein STB3|
          Length = 511

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 206 VVRPPAHAQAVADCHTAARRAPH 274
           +V PP+HAQ  AD H   R A H
Sbjct: 406 IVSPPSHAQPPADHHPLGREADH 428

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>Y309_MYCGE (P47551) Hypothetical lipoprotein MG309 precursor|
          Length = 1225

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 132 LRPHLPRVTAFLIVFSVGYSLGIVSSSARPPTPKPSQTVIRPHAAHLTAASSSVPAS 302
           ++  L RV   L++ S+  SLGIV+ +   P  +  + + RP +A       S+ A+
Sbjct: 1   MKRFLHRVKWPLLLSSIAVSLGIVAVACAQPNSRTIENLFRPSSAFTDKNDGSINAT 57

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>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
 Frame = +3

Query: 171 VFSVGYSLGIV--SSSARPPTPKPSQTVIRPH----------AAHLTAAS-SSVPASSNG 311
           +F +   LG+   +S+  P  P P Q  +RP           A HL  +S SS  ASS+ 
Sbjct: 783 IFVIQNQLGVPPPASNPAPTAPGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAVASSSE 842

Query: 312 TGTSYPRSPPHD 347
           T +  P   P D
Sbjct: 843 TSSRLPAPTPSD 854

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>RNH2_RHORT (Q2RPE1) Ribonuclease HII (EC 3.1.26.4) (RNase HII)|
          Length = 218

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 192 LGIVSSSARPPTPKPSQTVIRPHAAHLTAASSSVPA 299
           L +V  +  PP P P Q V+R     L+ A++S+ A
Sbjct: 111 LALVDGNRLPPLPCPGQAVVRGDGLSLSIAAASIVA 146

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>GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 506

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 327 PRSPPHDLFRFGDECGQPVPAEDVVKTLLDK 419
           P +PP + FRFG+E   P   ++  +  +DK
Sbjct: 457 PTAPPEESFRFGEETTTPYQKQEKKQETIDK 487

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>SYI_BACSU (Q45477) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 921

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -3

Query: 397 TSSAGTGCPHSSPNRNRS---CGGERG*LVPVPFDEAGTLEEAA 275
           T+ AGTGC H++P         G + G  V  P DE G +   A
Sbjct: 315 TTDAGTGCVHTAPGHGEDDFIIGQKYGLDVLCPVDEKGVMTSEA 358

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>SYI1_BACCR (Q819R4) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase 1) (IleRS 1)
          Length = 921

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -3

Query: 397 TSSAGTGCPHSSPNRNRS---CGGERG*LVPVPFDEAGTLEEAA 275
           T+ AGTGC H++P         G + G  V  P D+ G L   A
Sbjct: 314 TTDAGTGCVHTAPGHGEDDFVVGKKYGLEVLCPVDDKGVLTNEA 357

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>TEGP_BHV1S (Q08098) Probable tegument protein|
          Length = 158

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +3

Query: 195 GIVSSSARPPTPKPSQTVIRPHAAHLTAASSSVPASSNGTGTSYP--RSPPHDLFRFGDE 368
           G   + A PP+P P  +++      LT   +   A + GT  + P  R+P  +    G  
Sbjct: 28  GADEADAAPPSPPPEGSIVSIPILELTIEDAPASAEATGTAAAAPAGRTPDANAAPGG-- 85

Query: 369 CGQPVPAED 395
              PVPA D
Sbjct: 86  -YVPVPAAD 93

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>TF2LX_MIOTA (Q8MID1) Homeobox protein TGIF2LX (TGFB-induced factor 2-like|
           protein, X-linked) (TGF(beta)induced transcription
           factor 2-like protein) (TGIF-like on the X)
          Length = 249

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 258 HAAHLTAASSSVPASSNGTGTSYPRSPPHDLFRFGDECGQPVP 386
           HA HL +  +SVPA S   G+   +S P      G   G+ +P
Sbjct: 138 HATHLQSTDASVPAKSGPRGSDNVQSLPLRSSPKGQMSGEKIP 180

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>TF2LX_MACMU (Q8MID6) Homeobox protein TGIF2LX (TGFB-induced factor 2-like|
           protein, X-linked) (TGF(beta)induced transcription
           factor 2-like protein) (TGIF-like on the X)
          Length = 249

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 258 HAAHLTAASSSVPASSNGTGTSYPRSPPHDLFRFGDECGQPVP 386
           HA HL +  +SVPA S   G+   +S P      G   G+ +P
Sbjct: 138 HATHLRSTDASVPAKSGPRGSDNVQSLPLRSSPKGQMSGEKIP 180

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>TF2LX_MACFA (Q8MID8) Homeobox protein TGIF2LX (TGFB-induced factor 2-like|
           protein, X-linked) (TGF(beta)induced transcription
           factor 2-like protein) (TGIF-like on the X)
          Length = 249

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 258 HAAHLTAASSSVPASSNGTGTSYPRSPPHDLFRFGDECGQPVP 386
           HA HL +  +SVPA S   G+   +S P      G   G+ +P
Sbjct: 138 HATHLRSTDASVPAKSGPRGSDNVQSLPLRSSPKGQMSGEKIP 180

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>TERT_MOUSE (O70372) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase|
           catalytic subunit)
          Length = 1122

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 201 VSSSARPPTPKPSQTVIRPHAAHLTAASSSVPASSNGTGTSYPR 332
           + SS+R   PKP     R    HL+  S+SVP++        PR
Sbjct: 211 IKSSSRQEAPKPLALPSRGTKRHLSLTSTSVPSAKKARCYPVPR 254

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>SYI_SYNPX (Q7U9G9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 974

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -3

Query: 403 FTTSSAGTGCPHSSPNRNRS---CGGERG*LVPVPFDEAGTLEEAA 275
           + T+ +GTG  H++P         G + G  V  P DEAGTL   A
Sbjct: 346 YITTESGTGLVHTAPGHGVDDFHTGQKHGLPVLCPVDEAGTLTAEA 391

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>HLF_MOUSE (Q8BW74) Hepatic leukemia factor|
          Length = 295

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +3

Query: 228 PKPSQTVIRPHAAHLTAASSSVPA----SSNGTGTSYPRSPPHDLFRFGDECGQPVPA 389
           P PSQ    PH   L  ASS+ P+    SS  T   +P  P  +  +     GQ +PA
Sbjct: 99  PSPSQHDHSPHPPGLQPASSTAPSVMDLSSRATAPLHPGIPSPNCMQSPIRPGQLLPA 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,080,404
Number of Sequences: 219361
Number of extensions: 794281
Number of successful extensions: 4104
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 3698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4080
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result