ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart41b02 |
|---|---|
| Clone Library Name | barley_pub |
>Y531_METJA (Q57951) Hypothetical protein MJ0531| Length = 170 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/47 (44%), Positives = 33/47 (70%) Frame = +3 Query: 420 ICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 I + +K A+++VMG+ G +R LLGSV++ + NA+CPVL+VK Sbjct: 119 IVEFAEKKKADLIVMGTTGKTGLERILLGSVAERVIKNAHCPVLVVK 165
>YFK5_SCHPO (P87132) Hypothetical protein C167.05 in chromosome I| Length = 601 Score = 44.3 bits (103), Expect = 3e-04 Identities = 19/52 (36%), Positives = 34/52 (65%) Frame = +3 Query: 411 RSVICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVKSK 566 + +I +M+D + +++VMGS G K LLGS S+Y V+ ++ PV++ + K Sbjct: 520 KHLIIEMIDYIEPSLVVMGSRGRSHLKGVLLGSFSNYLVNKSSVPVMVARKK 571
>Y577_METJA (Q57997) Protein MJ0577| Length = 162 Score = 43.9 bits (102), Expect = 3e-04 Identities = 20/49 (40%), Positives = 31/49 (63%) Frame = +3 Query: 420 ICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVKSK 566 I + + G ++++MGSHG K LLGSV++ + +N PVL+VK K Sbjct: 112 IVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRK 160
>Y2028_MYCBO (P64922) Hypothetical protein Mb2028c| Length = 295 Score = 39.7 bits (91), Expect = 0.007 Identities = 19/39 (48%), Positives = 24/39 (61%) Frame = +3 Query: 447 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVKS 563 A ++V+GS G G R LLGSVS V A CPV ++ S Sbjct: 111 AEMVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVIHS 149 Score = 36.2 bits (82), Expect = 0.072 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%) Frame = +3 Query: 411 RSVICD-----MVDK-LGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 R V+CD +V K A ++V+GSHG G LLGSVS+ + A PV++ + Sbjct: 238 RVVVCDRPARKLVQKSASAQLVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIVAR 293
>Y2005_MYCTU (P64921) Hypothetical protein Rv2005c/MT2061| Length = 295 Score = 39.7 bits (91), Expect = 0.007 Identities = 19/39 (48%), Positives = 24/39 (61%) Frame = +3 Query: 447 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVKS 563 A ++V+GS G G R LLGSVS V A CPV ++ S Sbjct: 111 AEMVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVIHS 149 Score = 36.2 bits (82), Expect = 0.072 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%) Frame = +3 Query: 411 RSVICD-----MVDK-LGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 R V+CD +V K A ++V+GSHG G LLGSVS+ + A PV++ + Sbjct: 238 RVVVCDRPARKLVQKSASAQLVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIVAR 293
>Y1654_SYNY3 (P72817) Hypothetical protein sll1654| Length = 157 Score = 39.7 bits (91), Expect = 0.007 Identities = 17/46 (36%), Positives = 29/46 (63%) Frame = +3 Query: 420 ICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIV 557 ICD+ D++ A+++VMG G G + SV+ ++ + CPVL+V Sbjct: 111 ICDVADEVNADLIVMGCRGLGLTTEGVAESVTARVINLSPCPVLVV 156
>YXIE_BACSU (P42297) Hypothetical protein yxiE precursor| Length = 148 Score = 35.8 bits (81), Expect = 0.094 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = +3 Query: 444 GANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 G +++V+GS G K +LGSVS + CPVLIV+ Sbjct: 110 GVSLIVVGSRGISGLKEMMLGSVSHKVSQLSTCPVLIVR 148
>Y1388_SYNY3 (P74148) Hypothetical protein sll1388| Length = 154 Score = 35.8 bits (81), Expect = 0.094 Identities = 18/47 (38%), Positives = 25/47 (53%) Frame = +3 Query: 420 ICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 I DM A+++V+G G LGSVS Y + + C VLIV+ Sbjct: 107 IRDMAKNWDADLVVLGRRGLKGLAEVFLGSVSSYVIHHVQCSVLIVQ 153
>USPE_PHOLL (P60005) Universal stress protein E| Length = 314 Score = 35.4 bits (80), Expect = 0.12 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = +3 Query: 414 SVICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 SVI M D++ A ++V+G G A LG+ +++ + + C +L +K Sbjct: 253 SVIPQMCDEMNAGIIVLGILGRTGLSAAFLGNTAEHVIDHLKCDILTIK 301
>YQA3_THEAQ (P74897) Hypothetical 14.6 kDa protein in QAH/OAS sulfhydrylase| 3'region Length = 137 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/38 (44%), Positives = 24/38 (63%) Frame = +3 Query: 447 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 A+++VMG+ G G LGS S V+ A CPVL+V+ Sbjct: 100 ADLIVMGTRGLGAVGSLFLGSQSQKVVAEAPCPVLLVR 137
>Y2346_MYCBO (P64996) Hypothetical protein Mb2346c| Length = 292 Score = 34.3 bits (77), Expect = 0.27 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +3 Query: 420 ICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLI 554 + D+V++L A VLV+GS G R L+GS +D + ++ PV I Sbjct: 95 LLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAI 139
>Y2319_MYCTU (P64995) Hypothetical protein Rv2319c/MT2382| Length = 292 Score = 34.3 bits (77), Expect = 0.27 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +3 Query: 420 ICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLI 554 + D+V++L A VLV+GS G R L+GS +D + ++ PV I Sbjct: 95 LLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAI 139
>NHAX_BACSU (O07552) Stress response protein nhaX| Length = 166 Score = 34.3 bits (77), Expect = 0.27 Identities = 16/47 (34%), Positives = 29/47 (61%) Frame = +3 Query: 420 ICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 I + +++ A+++V GS K+ + GSVS+ + ++ PVLIVK Sbjct: 120 IIEHANRISADMIVTGSRDQNRLKKLIFGSVSEKLSAKSDIPVLIVK 166
>Y1101_SYNY3 (P72745) Hypothetical protein slr1101| Length = 108 Score = 33.9 bits (76), Expect = 0.36 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = +3 Query: 417 VICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIV 557 +IC + ++++V+G G LLGSV +Y +A+C V +V Sbjct: 58 IICQRAKQDNSDIIVVGHRGRWGLSEILLGSVGNYVFHHAHCCVFVV 104
>USPG_SHIFL (Q83M07) Universal stress protein G| Length = 142 Score = 33.9 bits (76), Expect = 0.36 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = +3 Query: 411 RSVICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 R + ++ ++LGA+V+V+GS LLGS + + +AN PVL+V+ Sbjct: 94 RDEVNELAEELGADVVVIGSRNPSISTH-LLGSNASSVIRHANLPVLVVR 142
>USPG_ECOLI (P39177) Universal stress protein G| Length = 142 Score = 33.9 bits (76), Expect = 0.36 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = +3 Query: 411 RSVICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 R + ++ ++LGA+V+V+GS LLGS + + +AN PVL+V+ Sbjct: 94 RDEVNELAEELGADVVVIGSRNPSISTH-LLGSNASSVIRHANLPVLVVR 142
>USPG_ECO57 (Q8XBT3) Universal stress protein G| Length = 142 Score = 33.9 bits (76), Expect = 0.36 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = +3 Query: 411 RSVICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 R + ++ ++LGA+V+V+GS LLGS + + +AN PVL+V+ Sbjct: 94 RDEVNELAEELGADVVVIGSRNPSISTH-LLGSNASSVIRHANLPVLVVR 142
>Y2019_MYCBO (P0A5F8) Hypothetical protein Mb2019| Length = 317 Score = 33.9 bits (76), Expect = 0.36 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = +3 Query: 447 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 A ++V+GSHG G F LGSVS V++ PV++ + Sbjct: 271 AQLVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVAR 308 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +3 Query: 453 VLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIV 557 ++V+G G G ALLGSVS V +A+ PV ++ Sbjct: 124 MVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI 158
>Y1996_MYCTU (P0A5F7) Hypothetical protein Rv1996/MT2052| Length = 317 Score = 33.9 bits (76), Expect = 0.36 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = +3 Query: 447 ANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 A ++V+GSHG G F LGSVS V++ PV++ + Sbjct: 271 AQLVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVAR 308 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +3 Query: 453 VLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIV 557 ++V+G G G ALLGSVS V +A+ PV ++ Sbjct: 124 MVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI 158
>Y1916_COXBU (P45680) Hypothetical protein CBU1916| Length = 146 Score = 32.3 bits (72), Expect = 1.0 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +3 Query: 417 VICDMVDKLGANVLVMGSHG-YGFFKRALLGSVSDYCVSNANCPVLIVKSK 566 +I + G +++++GSHG +G + LLGS S+ + A C VL V+ K Sbjct: 96 LILEQAKNWGVDLIIVGSHGRHGI--QLLLGSTSNAVLHGAKCDVLAVRIK 144
>USPG_SALTY (P67093) Universal stress protein G| Length = 142 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/50 (38%), Positives = 30/50 (60%) Frame = +3 Query: 411 RSVICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 R V+ +M ++L A+V+V+GS LLGS + V +A PVL+V+ Sbjct: 94 RDVVNEMGEELDADVVVIGSRNPSITTH-LLGSNASSVVRHATLPVLVVR 142
>USPG_SALTI (P67094) Universal stress protein G| Length = 142 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/50 (38%), Positives = 30/50 (60%) Frame = +3 Query: 411 RSVICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 R V+ +M ++L A+V+V+GS LLGS + V +A PVL+V+ Sbjct: 94 RDVVNEMGEELDADVVVIGSRNPSITTH-LLGSNASSVVRHATLPVLVVR 142
>UNC5C_RAT (Q761X5) Netrin receptor UNC5C precursor (Unc-5 homolog C) (Unc-5| homolog 3) Length = 931 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = -1 Query: 109 LSSPSSTATSILRPSAGSIPLPSCMLLC 26 L P+ST T++ PSA SIPLP LC Sbjct: 826 LLDPASTITTVTGPSAFSIPLPIRQKLC 853
>UNC5C_MOUSE (O08747) Netrin receptor UNC5C precursor (Unc-5 homolog C) (Unc-5| homolog 3) (Rostral cerebellar malformation protein) Length = 931 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = -1 Query: 109 LSSPSSTATSILRPSAGSIPLPSCMLLC 26 L P+ST T++ PSA SIPLP LC Sbjct: 826 LLDPASTITTVTGPSAFSIPLPIRQKLC 853
>NHR9_CAEEL (Q23489) Nuclear hormone receptor family member nhr-9| Length = 332 Score = 30.8 bits (68), Expect = 3.0 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 9/49 (18%) Frame = +3 Query: 423 CDMVDKLGANVLVMGSHGYG---------FFKRALLGSVSDYCVSNANC 542 C + KLG S+ YG FF+RA LG +C++N NC Sbjct: 14 CAICSKLG------NSYNYGVLSCNACKMFFRRATLGKSEKFCINNDNC 56
>Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase 5'region| Length = 238 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 91 WTRATRASRRCDGASPTSPRAVTASLRPRTPSSCST 198 W A A RRC P P + + S RPR +SC+T Sbjct: 18 WRTARPAPRRCGSCRPPPPGSASPSPRPRR-ASCAT 52
>VG29_HAEIN (P44225) Mu-like prophage FluMu protein gp29| Length = 520 Score = 30.0 bits (66), Expect = 5.2 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +3 Query: 27 HKSIHEGKGMDPAEGRRILVAVDEGDESVQA 119 H S H G+ PA+ RIL A ++GD QA Sbjct: 33 HYSDHPASGLTPAKAARILRAAEQGDLVAQA 63
>USPG_ECOL6 (Q8FK07) Universal stress protein G| Length = 142 Score = 30.0 bits (66), Expect = 5.2 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +3 Query: 411 RSVICDMVDKLGANVLVMGSHGYGFFKRALLGSVSDYCVSNANCPVLIVK 560 R + ++ +L A+V+V+GS LLGS + + +AN PVL+V+ Sbjct: 94 RDEVNELAKELDADVVVIGSRNPSISTH-LLGSNASSVIRHANLPVLVVR 142
>Y266_METTH (O26366) UPF0218 protein MTH266| Length = 163 Score = 30.0 bits (66), Expect = 5.2 Identities = 21/61 (34%), Positives = 30/61 (49%) Frame = +3 Query: 9 SVTQTTHKSIHEGKGMDPAEGRRILVAVDEGDESVQALRWCLANFATRGDGELAPPDTIL 188 +VT++ KSI E G R ++ VD G+E + L L LAPPDT++ Sbjct: 84 TVTESLWKSIEEAIEGATERGERFMIVVD-GEEDLAVLPSIL----------LAPPDTVI 132 Query: 189 L 191 L Sbjct: 133 L 133
>UNC5C_HUMAN (O95185) Netrin receptor UNC5C precursor (Unc-5 homolog C) (Unc-5| homolog 3) Length = 931 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 109 LSSPSSTATSILRPSAGSIPLPSCMLLC 26 L P++T T++ PSA SIPLP LC Sbjct: 826 LLDPANTITTVTGPSAFSIPLPIRQKLC 853
>MAAY4_SCHCO (P37935) Mating-type protein A-alpha Y4| Length = 928 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +1 Query: 88 PWTRATRASRRCDGASPTSPRAVTASLRPRTPSSCSTS 201 P ++++ SR+ G S S RA + + RTPS STS Sbjct: 680 PARKSSKKSRKSKGESAASSRATSVASSVRTPSLSSTS 717
>KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 889 Score = 29.6 bits (65), Expect = 6.7 Identities = 9/22 (40%), Positives = 12/22 (54%) Frame = +1 Query: 397 PLGTPGASSATWWTSSEPTCWS 462 P G PG + TWW +P W+ Sbjct: 258 PAGGPGGAGGTWWRRWQPRVWA 279
>NR4A3_RAT (P51179) Orphan nuclear receptor NR4A3 (Nuclear hormone receptor| NOR-1/NOR-2) (Neuron-derived orphan receptor 1/2) Length = 628 Score = 29.3 bits (64), Expect = 8.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 480 GFFKRALLGSVSDYCVSNANCPV 548 GFFKR + + C++N NCPV Sbjct: 316 GFFKRTVQKNAKYVCLANKNCPV 338
>NR4A2_RAT (Q07917) Orphan nuclear receptor NR4A2 (Orphan nuclear receptor| NURR1) (NUR-related factor 1) (Regenerating liver nuclear receptor 1) (RNR-1) (SL-322) (Nuclear orphan receptor HZF-3) Length = 598 Score = 29.3 bits (64), Expect = 8.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 480 GFFKRALLGSVSDYCVSNANCPV 548 GFFKR + + C++N NCPV Sbjct: 285 GFFKRTVQKNAKYVCLANKNCPV 307
>NR4A2_MOUSE (Q06219) Orphan nuclear receptor NR4A2 (Orphan nuclear receptor| NURR1) (NUR-related factor 1) Length = 598 Score = 29.3 bits (64), Expect = 8.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 480 GFFKRALLGSVSDYCVSNANCPV 548 GFFKR + + C++N NCPV Sbjct: 285 GFFKRTVQKNAKYVCLANKNCPV 307
>NR4A2_HUMAN (P43354) Orphan nuclear receptor NR4A2 (Orphan nuclear receptor| NURR1) (Immediate-early response protein NOT) (Transcriptionally-inducible nuclear receptor) Length = 598 Score = 29.3 bits (64), Expect = 8.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 480 GFFKRALLGSVSDYCVSNANCPV 548 GFFKR + + C++N NCPV Sbjct: 285 GFFKRTVQKNAKYVCLANKNCPV 307
>NR4A3_MOUSE (Q9QZB6) Orphan nuclear receptor NR4A3 (Orphan nuclear receptor| TEC) (Translocated in extraskeletal chondrosarcoma) Length = 627 Score = 29.3 bits (64), Expect = 8.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 480 GFFKRALLGSVSDYCVSNANCPV 548 GFFKR + + C++N NCPV Sbjct: 315 GFFKRTVQKNAKYVCLANKNCPV 337
>NR4A3_HUMAN (Q92570) Orphan nuclear receptor NR4A3 (Nuclear hormone receptor| NOR-1) (Neuron-derived orphan receptor 1) (Mitogen-induced nuclear orphan receptor) Length = 626 Score = 29.3 bits (64), Expect = 8.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 480 GFFKRALLGSVSDYCVSNANCPV 548 GFFKR + + C++N NCPV Sbjct: 314 GFFKRTVQKNAKYVCLANKNCPV 336 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,484,435 Number of Sequences: 219361 Number of extensions: 1069300 Number of successful extensions: 4209 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 4004 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4201 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
