ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart41a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_462833.1| Oryza sativa (japonica cultivar-group), predic... 48 0.031
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.031
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.031
4dbj|AK108762.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.031
5dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.031
6gb|AC123075.5| Mus musculus BAC clone RP23-181C16 from chromosom... 46 0.12
7gb|AC122529.5| Mus musculus BAC clone RP24-511F2 from 3, complet... 46 0.12
8gb|AF349677.1| Cochliobolus carbonum histone deacetylase 2 (HDC2... 44 0.49
9gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 1.9
10ref|XM_482371.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.9
11gb|AC007589.8| Drosophila melanogaster clone BACR20D10, complete... 42 1.9
12gb|AC009537.6| Drosophila melanogaster clone BACR11M01, complete... 42 1.9
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.9
14gb|AY359007.1| Homo sapiens clone DNA57694 KIPV467 (UNQ467) mRNA... 42 1.9
15gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 42 1.9
16gb|CP000088.1| Thermobifida fusca YX, complete genome 42 1.9
17emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete ... 42 1.9
18gb|AD001502.1|CH19F21246 Homo sapiens DNA from chromosome 19-cos... 42 1.9
19dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
21gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
22ref|NM_207392.1| Homo sapiens KIPV467 (UNQ467), mRNA 42 1.9
23dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.9
24gb|AE005129.1| Halobacterium sp. NRC-1 section 160 of 170 of the... 42 1.9
25gb|AE005007.1| Halobacterium sp. NRC-1 section 38 of 170 of the ... 42 1.9
26dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
27dbj|AK119809.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
28dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
29gb|AE003604.4| Drosophila melanogaster chromosome 3R, section 4 ... 42 1.9
30emb|AJ293408.1|HSA293408 Homo sapiens mRNA differentially expres... 42 1.9
31ref|NM_187610.1| Oryza sativa (japonica cultivar-group), predic... 40 7.7
32ref|NM_184914.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.7
33gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 7.7
34gb|AY062258.1| Oryza sativa (japonica cultivar-group) dev-stage ... 40 7.7
35gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
36emb|AL139044.15| Human DNA sequence from clone RP11-6B20 on chro... 40 7.7
37gb|AY310358.1| Oryza sativa (japonica cultivar-group) allene oxi... 40 7.7
38gb|DQ398934.1| Petromyzon marinus neurofilament subunit NF-95 mR... 40 7.7
39gb|DQ398933.1| Petromyzon marinus neurofilament subunit NF-132 m... 40 7.7
40gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 7.7
41dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
42gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 7.7
43dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
44emb|AL512543.1|H0505A02 Oryza sativa genomic DNA, chromosome 4, ... 40 7.7
45dbj|AK066138.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
46dbj|AK061758.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
47emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 7.7
48gb|U19361.1|PMU19361 Petromyzon marinus neurofilament subunit NF... 40 7.7
49gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genom... 40 7.7
50emb|AL596088.14| Mouse DNA sequence from clone RP23-157O10 on ch... 40 7.7 
>ref|XM_462833.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 597

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 318 tcgcccgcgtccatcccgccgtcg 341
           ||||||||||||||||||||||||
Sbjct: 563 tcgcccgcgtccatcccgccgtcg 540
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 318      tcgcccgcgtccatcccgccgtcg 341
                ||||||||||||||||||||||||
Sbjct: 10028092 tcgcccgcgtccatcccgccgtcg 10028069
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>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 318    tcgcccgcgtccatcccgccgtcg 341
              ||||||||||||||||||||||||
Sbjct: 108374 tcgcccgcgtccatcccgccgtcg 108351
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>dbj|AK108762.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-G07, full
           insert sequence
          Length = 1619

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 318 tcgcccgcgtccatcccgccgtcg 341
           ||||||||||||||||||||||||
Sbjct: 953 tcgcccgcgtccatcccgccgtcg 976
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>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 318    tcgcccgcgtccatcccgccgtcg 341
              ||||||||||||||||||||||||
Sbjct: 122585 tcgcccgcgtccatcccgccgtcg 122562
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>gb|AC123075.5| Mus musculus BAC clone RP23-181C16 from chromosome 3, complete sequence
          Length = 198063

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 489   ggacggtggagatgctgaggagg 511
             |||||||||||||||||||||||
Sbjct: 52803 ggacggtggagatgctgaggagg 52781
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>gb|AC122529.5| Mus musculus BAC clone RP24-511F2 from 3, complete sequence
          Length = 159294

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 489    ggacggtggagatgctgaggagg 511
              |||||||||||||||||||||||
Sbjct: 149400 ggacggtggagatgctgaggagg 149378
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>gb|AF349677.1| Cochliobolus carbonum histone deacetylase 2 (HDC2) gene, complete cds
          Length = 2906

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 12   ctgctgtgcctgctacaatggc 33
            ||||||||||||||||||||||
Sbjct: 2460 ctgctgtgcctgctacaatggc 2481
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 50     gccgtgctgctcctctccctc 70
              |||||||||||||||||||||
Sbjct: 999802 gccgtgctgctcctctccctc 999822
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>ref|XM_482371.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1449

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 48 tcgccgtgctgctcctctccc 68
          |||||||||||||||||||||
Sbjct: 41 tcgccgtgctgctcctctccc 61
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>gb|AC007589.8| Drosophila melanogaster clone BACR20D10, complete sequence
          Length = 164712

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 327   tccatcccgccgtcgacgtcg 347
             |||||||||||||||||||||
Sbjct: 28367 tccatcccgccgtcgacgtcg 28347
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>gb|AC009537.6| Drosophila melanogaster clone BACR11M01, complete sequence
          Length = 160712

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 327    tccatcccgccgtcgacgtcg 347
              |||||||||||||||||||||
Sbjct: 155857 tccatcccgccgtcgacgtcg 155837
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 59      ctcctctccctcctggccgtc 79
               |||||||||||||||||||||
Sbjct: 8172064 ctcctctccctcctggccgtc 8172044



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 308      caccacggcctcgcccgcgt 327
                ||||||||||||||||||||
Sbjct: 31898709 caccacggcctcgcccgcgt 31898690



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      gctgctcctctccctcctgg 74
               ||||||||||||||||||||
Sbjct: 6577491 gctgctcctctccctcctgg 6577510
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>gb|AY359007.1| Homo sapiens clone DNA57694 KIPV467 (UNQ467) mRNA, complete cds
          Length = 415

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 50 gccgtgctgctcctctccctcctgg 74
          |||||| ||||||||||||||||||
Sbjct: 34 gccgtggtgctcctctccctcctgg 58
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 297     ggtggacgcgccaccacggcc 317
               |||||||||||||||||||||
Sbjct: 2920891 ggtggacgcgccaccacggcc 2920911
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 37      gctcgccaccctcgccgtgct 57
               |||||||||||||||||||||
Sbjct: 3365831 gctcgccaccctcgccgtgct 3365851
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>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 37     gctcgccaccctcgccgtgctgctc 61
              ||||||||||||||||| |||||||
Sbjct: 247473 gctcgccaccctcgccgggctgctc 247449
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>gb|AD001502.1|CH19F21246 Homo sapiens DNA from chromosome 19-cosmid f21246, genomic sequence
          Length = 44679

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 50    gccgtgctgctcctctccctcctgg 74
             |||||| ||||||||||||||||||
Sbjct: 24550 gccgtggtgctcctctccctcctgg 24526
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 48       tcgccgtgctgctcctctccc 68
                |||||||||||||||||||||
Sbjct: 19676173 tcgccgtgctgctcctctccc 19676193
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 59      ctcctctccctcctggccgtc 79
               |||||||||||||||||||||
Sbjct: 8169899 ctcctctccctcctggccgtc 8169879



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 308      caccacggcctcgcccgcgt 327
                ||||||||||||||||||||
Sbjct: 31989225 caccacggcctcgcccgcgt 31989206



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      gctgctcctctccctcctgg 74
               ||||||||||||||||||||
Sbjct: 6576704 gctgctcctctccctcctgg 6576723
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>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12,
              complete sequence
          Length = 195583

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 59     ctcctctccctcctggccgtc 79
              |||||||||||||||||||||
Sbjct: 103494 ctcctctccctcctggccgtc 103474
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>ref|NM_207392.1| Homo sapiens KIPV467 (UNQ467), mRNA
          Length = 415

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 50 gccgtgctgctcctctccctcctgg 74
          |||||| ||||||||||||||||||
Sbjct: 34 gccgtggtgctcctctccctcctgg 58
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 352     cgccgagcttgcccgcggcga 372
               |||||||||||||||||||||
Sbjct: 4660535 cgccgagcttgcccgcggcga 4660515



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 352     cgccgagcttgcccgcggcg 371
               ||||||||||||||||||||
Sbjct: 2442974 cgccgagcttgcccgcggcg 2442993
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>gb|AE005129.1| Halobacterium sp. NRC-1 section 160 of 170 of the complete genome
          Length = 18209

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 423  cggacaccgacgccgagcaga 443
            |||||||||||||||||||||
Sbjct: 3959 cggacaccgacgccgagcaga 3939
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>gb|AE005007.1| Halobacterium sp. NRC-1 section 38 of 170 of the complete genome
          Length = 10293

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 420  gcccggacaccgacgccgagc 440
            |||||||||||||||||||||
Sbjct: 8209 gcccggacaccgacgccgagc 8229
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>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0007M04
          Length = 176293

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   tcgccgtgctgctcctctccc 68
            |||||||||||||||||||||
Sbjct: 5124 tcgccgtgctgctcctctccc 5144
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>dbj|AK119809.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-H02, full
            insert sequence
          Length = 3078

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 59   ctcctctccctcctggccgtc 79
            |||||||||||||||||||||
Sbjct: 2904 ctcctctccctcctggccgtc 2924
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>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0042B03
          Length = 167669

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 48     tcgccgtgctgctcctctccc 68
              |||||||||||||||||||||
Sbjct: 151733 tcgccgtgctgctcctctccc 151753
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>gb|AE003604.4| Drosophila melanogaster chromosome 3R, section 4 of 118 of the complete
              sequence
          Length = 303434

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 327    tccatcccgccgtcgacgtcg 347
              |||||||||||||||||||||
Sbjct: 123348 tccatcccgccgtcgacgtcg 123328
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>emb|AJ293408.1|HSA293408 Homo sapiens mRNA differentially expressed in malignant melanoma,
          clone NN i5
          Length = 529

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 50 gccgtgctgctcctctccctcctgg 74
          |||||| ||||||||||||||||||
Sbjct: 72 gccgtggtgctcctctccctcctgg 96
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>ref|NM_187610.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1437

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  gctgctcctctccctcctgg 74
           ||||||||||||||||||||
Sbjct: 372 gctgctcctctccctcctgg 391
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>ref|NM_184914.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4185

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 caccacggcctcgcccgcgt 327
           ||||||||||||||||||||
Sbjct: 712 caccacggcctcgcccgcgt 693
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 333     ccgccgtcgacgtcgtgcccgccgagct 360
               |||||||||||| | |||||||||||||
Sbjct: 1517589 ccgccgtcgacgccctgcccgccgagct 1517562
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>gb|AY062258.1| Oryza sativa (japonica cultivar-group) dev-stage seedling allene
           oxide synthase (AOS) gene, complete cds
          Length = 2465

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  gctgctcctctccctcctgg 74
           ||||||||||||||||||||
Sbjct: 767 gctgctcctctccctcctgg 786
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>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0081P02,
              complete sequence
          Length = 162425

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     gctgctcctctccctcctgg 74
              ||||||||||||||||||||
Sbjct: 120253 gctgctcctctccctcctgg 120272
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>emb|AL139044.15| Human DNA sequence from clone RP11-6B20 on chromosome 6 Contains the
             ITPR3 gene for inositol 1,4,5-triphosphate receptor type
             3, a novel gene and the IHPK3 gene for inositol
             hexaphosphate kinase 3, complete sequence
          Length = 134250

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   cccttccggctctgcccacc 199
             ||||||||||||||||||||
Sbjct: 14188 cccttccggctctgcccacc 14169
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>gb|AY310358.1| Oryza sativa (japonica cultivar-group) allene oxide synthase mRNA,
           complete cds
          Length = 1775

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  gctgctcctctccctcctgg 74
           ||||||||||||||||||||
Sbjct: 489 gctgctcctctccctcctgg 508
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>gb|DQ398934.1| Petromyzon marinus neurofilament subunit NF-95 mRNA, complete cds
          Length = 2229

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 532 ccaccaccgccaccatgagc 551
           ||||||||||||||||||||
Sbjct: 119 ccaccaccgccaccatgagc 138
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>gb|DQ398933.1| Petromyzon marinus neurofilament subunit NF-132 mRNA, complete cds
          Length = 2518

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 532 ccaccaccgccaccatgagc 551
           ||||||||||||||||||||
Sbjct: 124 ccaccaccgccaccatgagc 143
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 534     accaccgccaccatgagcag 553
               ||||||||||||||||||||
Sbjct: 1549477 accaccgccaccatgagcag 1549496
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 310     ccacggcctcgcccgcgtcc 329
               ||||||||||||||||||||
Sbjct: 4257259 ccacggcctcgcccgcgtcc 4257240
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 318     tcgcccgcgtccatcccgcc 337
               ||||||||||||||||||||
Sbjct: 1929574 tcgcccgcgtccatcccgcc 1929555



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    cttgcccgcggcgaagaaca 378
              ||||||||||||||||||||
Sbjct: 818765 cttgcccgcggcgaagaaca 818746
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>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0523B07
          Length = 170510

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   ccacggcctcgcccgcgtcc 329
             ||||||||||||||||||||
Sbjct: 81018 ccacggcctcgcccgcgtcc 80999
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>emb|AL512543.1|H0505A02 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0505A02, complete
             sequence
          Length = 83989

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   ccacggcctcgcccgcgtcc 329
             ||||||||||||||||||||
Sbjct: 53663 ccacggcctcgcccgcgtcc 53682
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>dbj|AK066138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052K11, full
           insert sequence
          Length = 1974

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  gctgctcctctccctcctgg 74
           ||||||||||||||||||||
Sbjct: 635 gctgctcctctccctcctgg 654
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>dbj|AK061758.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A10, full
           insert sequence
          Length = 1843

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  gctgctcctctccctcctgg 74
           ||||||||||||||||||||
Sbjct: 512 gctgctcctctccctcctgg 531
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 330     atcccgccgtcgacgtcgtg 349
               ||||||||||||||||||||
Sbjct: 1063579 atcccgccgtcgacgtcgtg 1063560
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>gb|U19361.1|PMU19361 Petromyzon marinus neurofilament subunit NF-180 mRNA, complete cds
          Length = 3763

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 532 ccaccaccgccaccatgagc 551
           ||||||||||||||||||||
Sbjct: 108 ccaccaccgccaccatgagc 127
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>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete
             sequence
          Length = 150663

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   caccacggcctcgcccgcgt 327
             ||||||||||||||||||||
Sbjct: 99962 caccacggcctcgcccgcgt 99943
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>emb|AL596088.14| Mouse DNA sequence from clone RP23-157O10 on chromosome 11, complete
              sequence
          Length = 233204

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 521    ggcatccgcttccaccaccgccac 544
              |||||||||||||||||| |||||
Sbjct: 158413 ggcatccgcttccaccacagccac 158436


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,896,544
Number of Sequences: 3902068
Number of extensions: 3896544
Number of successful extensions: 100816
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99434
Number of HSP's gapped (non-prelim): 1382
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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