ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart41a03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 331 bits (167), Expect = 2e-87 Identities = 287/327 (87%) Strand = Plus / Minus Query: 274 cgaggcgcaggccgacgcggaggacgagccgctgctgggcatgctctactacgagctcgt 333 ||||||||||| ||||||||| ||||||||||| || ||| | ||||| |||| ||||| Sbjct: 5033220 cgaggcgcaggacgacgcggacgacgagccgctcctccgcaagttctaccacgacctcgt 5033161 Query: 334 cctgtcgcacccgtcgctggaggccgccctcgcggcgcacctgtccgcaaagctgtgcat 393 |||||||| |||||||||||| |||| ||||| ||| ||| | || ||||| ||||| Sbjct: 5033160 cctgtcgcggccgtcgctggagtccgcgctcgcctcgctgctggcggccaagctctgcat 5033101 Query: 394 ccagggcgcgctgccgcaggacgcgctccgggacatcctcgtcggcgcgctggccgcgca 453 || |||||||||||||||||| |||||||||| |||||| ||||||||| |||||||| Sbjct: 5033100 ccccggcgcgctgccgcaggaccagctccgggacctcctcgccggcgcgctcgccgcgca 5033041 Query: 454 cccggaggcgatccgccacacgcgcgccgacctcctcgcggcgcgcgaccgcgacccggc 513 ||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||| Sbjct: 5033040 cccggaggccgggcgcgccgcgcgcgccgacctcgtcgcggcgcgcgaccgcgacccggc 5032981 Query: 514 atgcgccaagatggtccactgcttcctctactacaagggcttcctcgccctgcaggccca 573 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 5032980 ctgcgccaagatggtccactgcttcctctactacaagggcttcctggcactgcaggccca 5032921 Query: 574 ccgcgccgcgcacgcgctctggtccga 600 |||||| |||||||||||||||||||| Sbjct: 5032920 ccgcgcggcgcacgcgctctggtccga 5032894 Score = 315 bits (159), Expect = 9e-83 Identities = 285/327 (87%) Strand = Plus / Plus Query: 274 cgaggcgcaggccgacgcggaggacgagccgctgctgggcatgctctactacgagctcgt 333 ||||||||||| ||||||||| ||||||||||| || ||| | ||||| |||| ||||| Sbjct: 4446023 cgaggcgcaggacgacgcggacgacgagccgctcctccgcaagttctaccacgacctcgt 4446082 Query: 334 cctgtcgcacccgtcgctggaggccgccctcgcggcgcacctgtccgcaaagctgtgcat 393 |||||||| |||||||||||| |||| ||||| ||| ||| | || ||||| ||||| Sbjct: 4446083 cctgtcgcggccgtcgctggagtccgcgctcgcctcgctgctggcggccaagctctgcat 4446142 Query: 394 ccagggcgcgctgccgcaggacgcgctccgggacatcctcgtcggcgcgctggccgcgca 453 || |||||||||||||||||| |||||||||| |||||| ||||||||| |||||||| Sbjct: 4446143 ccccggcgcgctgccgcaggaccagctccgggacctcctcgccggcgcgctcgccgcgca 4446202 Query: 454 cccggaggcgatccgccacacgcgcgccgacctcctcgcggcgcgcgaccgcgacccggc 513 ||||||||| ||| | |||||||||||||| |||||||||||||||||||||||| Sbjct: 4446203 cccggaggccgggcgcgccgcgcgcgccgacctcgccgcggcgcgcgaccgcgacccggc 4446262 Query: 514 atgcgccaagatggtccactgcttcctctactacaagggcttcctcgccctgcaggccca 573 |||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| Sbjct: 4446263 ctgcgccaagatggtccactgcttcctctactacaggggcttcctggcactgcaggccca 4446322 Query: 574 ccgcgccgcgcacgcgctctggtccga 600 |||||| |||||||||||||||||||| Sbjct: 4446323 ccgcgcggcgcacgcgctctggtccga 4446349 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 104 atggcagcctgcgtcgacaagtgg 127 |||||||||||||||||||||||| Sbjct: 5033399 atggcagcctgcgtcgacaagtgg 5033376 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 399 gcgcgctgccgcaggacgcgctccg 423 |||||| |||||||||||||||||| Sbjct: 20199736 gcgcgccgccgcaggacgcgctccg 20199760 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 atggcagcctgcgtcgacaagtgg 127 ||||||||||||||||| |||||| Sbjct: 4445862 atggcagcctgcgtcgataagtgg 4445885
>gb|AC145480.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0064E16, from chromosome 3, complete sequence Length = 139123 Score = 331 bits (167), Expect = 2e-87 Identities = 287/327 (87%) Strand = Plus / Minus Query: 274 cgaggcgcaggccgacgcggaggacgagccgctgctgggcatgctctactacgagctcgt 333 ||||||||||| ||||||||| ||||||||||| || ||| | ||||| |||| ||||| Sbjct: 97674 cgaggcgcaggacgacgcggacgacgagccgctcctccgcaagttctaccacgacctcgt 97615 Query: 334 cctgtcgcacccgtcgctggaggccgccctcgcggcgcacctgtccgcaaagctgtgcat 393 |||||||| |||||||||||| |||| ||||| ||| ||| | || ||||| ||||| Sbjct: 97614 cctgtcgcggccgtcgctggagtccgcgctcgcctcgctgctggcggccaagctctgcat 97555 Query: 394 ccagggcgcgctgccgcaggacgcgctccgggacatcctcgtcggcgcgctggccgcgca 453 || |||||||||||||||||| |||||||||| |||||| ||||||||| |||||||| Sbjct: 97554 ccccggcgcgctgccgcaggaccagctccgggacctcctcgccggcgcgctcgccgcgca 97495 Query: 454 cccggaggcgatccgccacacgcgcgccgacctcctcgcggcgcgcgaccgcgacccggc 513 ||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||| Sbjct: 97494 cccggaggccgggcgcgccgcgcgcgccgacctcgtcgcggcgcgcgaccgcgacccggc 97435 Query: 514 atgcgccaagatggtccactgcttcctctactacaagggcttcctcgccctgcaggccca 573 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 97434 ctgcgccaagatggtccactgcttcctctactacaagggcttcctggcactgcaggccca 97375 Query: 574 ccgcgccgcgcacgcgctctggtccga 600 |||||| |||||||||||||||||||| Sbjct: 97374 ccgcgcggcgcacgcgctctggtccga 97348 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 104 atggcagcctgcgtcgacaagtgg 127 |||||||||||||||||||||||| Sbjct: 97853 atggcagcctgcgtcgacaagtgg 97830
>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence Length = 155037 Score = 331 bits (167), Expect = 2e-87 Identities = 287/327 (87%) Strand = Plus / Plus Query: 274 cgaggcgcaggccgacgcggaggacgagccgctgctgggcatgctctactacgagctcgt 333 ||||||||||| ||||||||| ||||||||||| || ||| | ||||| |||| ||||| Sbjct: 136487 cgaggcgcaggacgacgcggacgacgagccgctcctccgcaagttctaccacgacctcgt 136546 Query: 334 cctgtcgcacccgtcgctggaggccgccctcgcggcgcacctgtccgcaaagctgtgcat 393 |||||||| |||||||||||| |||| ||||| ||| ||| | || ||||| ||||| Sbjct: 136547 cctgtcgcggccgtcgctggagtccgcgctcgcctcgctgctggcggccaagctctgcat 136606 Query: 394 ccagggcgcgctgccgcaggacgcgctccgggacatcctcgtcggcgcgctggccgcgca 453 || |||||||||||||||||| |||||||||| |||||| ||||||||| |||||||| Sbjct: 136607 ccccggcgcgctgccgcaggaccagctccgggacctcctcgccggcgcgctcgccgcgca 136666 Query: 454 cccggaggcgatccgccacacgcgcgccgacctcctcgcggcgcgcgaccgcgacccggc 513 ||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||| Sbjct: 136667 cccggaggccgggcgcgccgcgcgcgccgacctcgtcgcggcgcgcgaccgcgacccggc 136726 Query: 514 atgcgccaagatggtccactgcttcctctactacaagggcttcctcgccctgcaggccca 573 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 136727 ctgcgccaagatggtccactgcttcctctactacaagggcttcctggcactgcaggccca 136786 Query: 574 ccgcgccgcgcacgcgctctggtccga 600 |||||| |||||||||||||||||||| Sbjct: 136787 ccgcgcggcgcacgcgctctggtccga 136813 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 104 atggcagcctgcgtcgacaagtgg 127 |||||||||||||||||||||||| Sbjct: 136308 atggcagcctgcgtcgacaagtgg 136331
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 331 bits (167), Expect = 2e-87 Identities = 287/327 (87%) Strand = Plus / Minus Query: 274 cgaggcgcaggccgacgcggaggacgagccgctgctgggcatgctctactacgagctcgt 333 ||||||||||| ||||||||| ||||||||||| || ||| | ||||| |||| ||||| Sbjct: 5032435 cgaggcgcaggacgacgcggacgacgagccgctcctccgcaagttctaccacgacctcgt 5032376 Query: 334 cctgtcgcacccgtcgctggaggccgccctcgcggcgcacctgtccgcaaagctgtgcat 393 |||||||| |||||||||||| |||| ||||| ||| ||| | || ||||| ||||| Sbjct: 5032375 cctgtcgcggccgtcgctggagtccgcgctcgcctcgctgctggcggccaagctctgcat 5032316 Query: 394 ccagggcgcgctgccgcaggacgcgctccgggacatcctcgtcggcgcgctggccgcgca 453 || |||||||||||||||||| |||||||||| |||||| ||||||||| |||||||| Sbjct: 5032315 ccccggcgcgctgccgcaggaccagctccgggacctcctcgccggcgcgctcgccgcgca 5032256 Query: 454 cccggaggcgatccgccacacgcgcgccgacctcctcgcggcgcgcgaccgcgacccggc 513 ||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||| Sbjct: 5032255 cccggaggccgggcgcgccgcgcgcgccgacctcgtcgcggcgcgcgaccgcgacccggc 5032196 Query: 514 atgcgccaagatggtccactgcttcctctactacaagggcttcctcgccctgcaggccca 573 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 5032195 ctgcgccaagatggtccactgcttcctctactacaagggcttcctggcactgcaggccca 5032136 Query: 574 ccgcgccgcgcacgcgctctggtccga 600 |||||| |||||||||||||||||||| Sbjct: 5032135 ccgcgcggcgcacgcgctctggtccga 5032109 Score = 315 bits (159), Expect = 9e-83 Identities = 285/327 (87%) Strand = Plus / Plus Query: 274 cgaggcgcaggccgacgcggaggacgagccgctgctgggcatgctctactacgagctcgt 333 ||||||||||| ||||||||| ||||||||||| || ||| | ||||| |||| ||||| Sbjct: 4446138 cgaggcgcaggacgacgcggacgacgagccgctcctccgcaagttctaccacgacctcgt 4446197 Query: 334 cctgtcgcacccgtcgctggaggccgccctcgcggcgcacctgtccgcaaagctgtgcat 393 |||||||| |||||||||||| |||| ||||| ||| ||| | || ||||| ||||| Sbjct: 4446198 cctgtcgcggccgtcgctggagtccgcgctcgcctcgctgctggcggccaagctctgcat 4446257 Query: 394 ccagggcgcgctgccgcaggacgcgctccgggacatcctcgtcggcgcgctggccgcgca 453 || |||||||||||||||||| |||||||||| |||||| ||||||||| |||||||| Sbjct: 4446258 ccccggcgcgctgccgcaggaccagctccgggacctcctcgccggcgcgctcgccgcgca 4446317 Query: 454 cccggaggcgatccgccacacgcgcgccgacctcctcgcggcgcgcgaccgcgacccggc 513 ||||||||| ||| | |||||||||||||| |||||||||||||||||||||||| Sbjct: 4446318 cccggaggccgggcgcgccgcgcgcgccgacctcgccgcggcgcgcgaccgcgacccggc 4446377 Query: 514 atgcgccaagatggtccactgcttcctctactacaagggcttcctcgccctgcaggccca 573 |||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| Sbjct: 4446378 ctgcgccaagatggtccactgcttcctctactacaggggcttcctggcactgcaggccca 4446437 Query: 574 ccgcgccgcgcacgcgctctggtccga 600 |||||| |||||||||||||||||||| Sbjct: 4446438 ccgcgcggcgcacgcgctctggtccga 4446464 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 104 atggcagcctgcgtcgacaagtgg 127 |||||||||||||||||||||||| Sbjct: 5032614 atggcagcctgcgtcgacaagtgg 5032591 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 399 gcgcgctgccgcaggacgcgctccg 423 |||||| |||||||||||||||||| Sbjct: 20192763 gcgcgccgccgcaggacgcgctccg 20192787 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 atggcagcctgcgtcgacaagtgg 127 ||||||||||||||||| |||||| Sbjct: 4445977 atggcagcctgcgtcgataagtgg 4446000
>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0042J17, complete sequence Length = 171442 Score = 315 bits (159), Expect = 9e-83 Identities = 285/327 (87%) Strand = Plus / Plus Query: 274 cgaggcgcaggccgacgcggaggacgagccgctgctgggcatgctctactacgagctcgt 333 ||||||||||| ||||||||| ||||||||||| || ||| | ||||| |||| ||||| Sbjct: 51315 cgaggcgcaggacgacgcggacgacgagccgctcctccgcaagttctaccacgacctcgt 51374 Query: 334 cctgtcgcacccgtcgctggaggccgccctcgcggcgcacctgtccgcaaagctgtgcat 393 |||||||| |||||||||||| |||| ||||| ||| ||| | || ||||| ||||| Sbjct: 51375 cctgtcgcggccgtcgctggagtccgcgctcgcctcgctgctggcggccaagctctgcat 51434 Query: 394 ccagggcgcgctgccgcaggacgcgctccgggacatcctcgtcggcgcgctggccgcgca 453 || |||||||||||||||||| |||||||||| |||||| ||||||||| |||||||| Sbjct: 51435 ccccggcgcgctgccgcaggaccagctccgggacctcctcgccggcgcgctcgccgcgca 51494 Query: 454 cccggaggcgatccgccacacgcgcgccgacctcctcgcggcgcgcgaccgcgacccggc 513 ||||||||| ||| | |||||||||||||| |||||||||||||||||||||||| Sbjct: 51495 cccggaggccgggcgcgccgcgcgcgccgacctcgccgcggcgcgcgaccgcgacccggc 51554 Query: 514 atgcgccaagatggtccactgcttcctctactacaagggcttcctcgccctgcaggccca 573 |||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| Sbjct: 51555 ctgcgccaagatggtccactgcttcctctactacaggggcttcctggcactgcaggccca 51614 Query: 574 ccgcgccgcgcacgcgctctggtccga 600 |||||| |||||||||||||||||||| Sbjct: 51615 ccgcgcggcgcacgcgctctggtccga 51641 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 atggcagcctgcgtcgacaagtgg 127 ||||||||||||||||| |||||| Sbjct: 51154 atggcagcctgcgtcgataagtgg 51177
>gb|AF453838.1| Zea mays satase isoform II mRNA, complete cds Length = 1172 Score = 236 bits (119), Expect = 7e-59 Identities = 242/278 (87%), Gaps = 5/278 (1%) Strand = Plus / Plus Query: 329 ctcgtcctgtcgcacccgtcgctggaggccgccctcgcggcgcacctgtccgcaaagctg 388 ||||||||||||| |||||||||||||||||||||||| ||||||||||| || || | Sbjct: 231 ctcgtcctgtcgcgcccgtcgctggaggccgccctcgccgcgcacctgtcggccaacgtc 290 Query: 389 tgcatccagggcgcgctgccgcaggacgcgctccgggacatcctcgtcggcgcgctggcc 448 ||| ||| |||||||||||||||||||||||||||||| |||| | || ||| |||||| Sbjct: 291 tgcgtccccggcgcgctgccgcaggacgcgctccgggacctcctggccgccgcactggcc 350 Query: 449 gcgcacccggag-gcgatccgccacacgcgcgccgacctcctcgcggcgcgcgaccgcga 507 |||| ||||||| || ||| | | ||||||||||||||| ||||||||||||||||| Sbjct: 351 gcgcgcccggagtccggcccggc-cgcgcgcgccgacctcccggcggcgcgcgaccgcga 409 Query: 508 cccggcatgcgccaagatggtccactgcttcctctactacaagggcttcctcgccctgca 567 |||| |||| | |||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 410 --cggc-tgcggccggatggtgcactgcttcctctactacaagggcttcctcgccctgca 466 Query: 568 ggcccaccgcgccgcgcacgcgctctggtccgagggcc 605 ||| |||||||||||||||| ||| |||| |||||||| Sbjct: 467 ggcgcaccgcgccgcgcacgggctgtggtgcgagggcc 504
>ref|XM_464531.1| Oryza sativa (japonica cultivar-group), mRNA Length = 897 Score = 97.6 bits (49), Expect = 4e-17 Identities = 73/81 (90%) Strand = Plus / Plus Query: 529 ccactgcttcctctactacaagggcttcctcgccctgcaggcccaccgcgccgcgcacgc 588 ||||||| ||||| |||||||||||||||||||| | ||||||||||||| ||||||||| Sbjct: 372 ccactgcctcctcgactacaagggcttcctcgccgtccaggcccaccgcgtcgcgcacgc 431 Query: 589 gctctggtccgagggccgccg 609 ||||||| | |||||||||| Sbjct: 432 gctctgggcgcagggccgccg 452 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Plus Query: 478 cgccgacctcctcgcggcgcgcgaccgcgacccggcatgcgc 519 |||||||||||| || ||| ||| |||||||||||| ||||| Sbjct: 318 cgccgacctcctagccgcgggcgcccgcgacccggcctgcgc 359
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 97.6 bits (49), Expect = 4e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 529 ccactgcttcctctactacaagggcttcctcgccctgcaggcccaccgcgccgcgcacgc 588 ||||||| ||||| |||||||||||||||||||| | ||||||||||||| ||||||||| Sbjct: 5749129 ccactgcctcctcgactacaagggcttcctcgccgtccaggcccaccgcgtcgcgcacgc 5749070 Query: 589 gctctggtccgagggccgccg 609 ||||||| | |||||||||| Sbjct: 5749069 gctctgggcgcagggccgccg 5749049 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Minus Query: 478 cgccgacctcctcgcggcgcgcgaccgcgacccggcatgcgc 519 |||||||||||| || ||| ||| |||||||||||| ||||| Sbjct: 5749183 cgccgacctcctagccgcgggcgcccgcgacccggcctgcgc 5749142
>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1135_F06 Length = 102230 Score = 97.6 bits (49), Expect = 4e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 529 ccactgcttcctctactacaagggcttcctcgccctgcaggcccaccgcgccgcgcacgc 588 ||||||| ||||| |||||||||||||||||||| | ||||||||||||| ||||||||| Sbjct: 38643 ccactgcctcctcgactacaagggcttcctcgccgtccaggcccaccgcgtcgcgcacgc 38584 Query: 589 gctctggtccgagggccgccg 609 ||||||| | |||||||||| Sbjct: 38583 gctctgggcgcagggccgccg 38563 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Minus Query: 478 cgccgacctcctcgcggcgcgcgaccgcgacccggcatgcgc 519 |||||||||||| || ||| ||| |||||||||||| ||||| Sbjct: 38697 cgccgacctcctagccgcgggcgcccgcgacccggcctgcgc 38656
>gb|BT008919.1| Triticum aestivum clone wpa1c.pk015.c12:fis, full insert mRNA sequence Length = 1301 Score = 85.7 bits (43), Expect = 2e-13 Identities = 102/119 (85%), Gaps = 2/119 (1%) Strand = Plus / Plus Query: 478 cgccgacctcctcgcggcgcgcgaccgcgacccggcatgcgccaagatggtcc-actgct 536 ||||||||||||||| ||||||| ||||||||| || |||| | ||| ||| ||||| Sbjct: 432 cgccgacctcctcgccgcgcgcgcccgcgaccccgcctgcgtcg-gattctcccactgcc 490 Query: 537 tcctctactacaagggcttcctcgccctgcaggcccaccgcgccgcgcacgcgctctgg 595 ||||| |||||||||||||||||||| | ||||| ||||||| |||||||| ||||||| Sbjct: 491 tcctcaactacaagggcttcctcgccatccaggcgcaccgcgtcgcgcacgtgctctgg 549
>gb|AF453836.1| Zea mays satase isoform III mRNA, complete cds Length = 1225 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 529 ccactgcttcctctactacaagggcttcctcgccctgcaggcccaccgcgccgcgcacgc 588 ||||||| ||||| |||||||||||||||||||| | ||||||||||||| |||||||| Sbjct: 447 ccactgcctcctcaactacaagggcttcctcgccatccaggcccaccgcgtcgcgcacgt 506 Query: 589 gctctgg 595 ||||||| Sbjct: 507 gctctgg 513
>ref|NM_191801.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 912 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 529 ccactgcttcctctactacaagggcttcctcgccctgcaggcccaccgcgccgcgcacgc 588 ||||||| ||||| |||||||||||||||||||| | |||||||| |||| |||||||| Sbjct: 393 ccactgcctcctcaactacaagggcttcctcgccatccaggcccagcgcgtcgcgcacgt 452 Query: 589 gctctgg 595 ||||||| Sbjct: 453 gctctgg 459
>gb|AY100470.1| Oryza sativa (indica cultivar-group) putative soluble starch synthase IV-1 gene, complete cds Length = 15000 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 529 ccactgcttcctctactacaagggcttcctcgccctgcaggcccaccgcgccgcgcacgc 588 ||||||| ||||| |||||||||||||||||||| | |||||||| |||| |||||||| Sbjct: 2765 ccactgcctcctcaactacaagggcttcctcgccatccaggcccagcgcgtcgcgcacgt 2706 Query: 589 gctctgg 595 ||||||| Sbjct: 2705 gctctgg 2699
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 529 ccactgcttcctctactacaagggcttcctcgccctgcaggcccaccgcgccgcgcacgc 588 ||||||| ||||| |||||||||||||||||||| | |||||||| |||| |||||||| Sbjct: 30036246 ccactgcctcctcaactacaagggcttcctcgccatccaggcccagcgcgtcgcgcacgt 30036305 Query: 589 gctctgg 595 ||||||| Sbjct: 30036306 gctctgg 30036312 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 225 gcgggggcagctgcaacggcggcgacca 252 ||||||||||| || ||||||||||||| Sbjct: 34579860 gcgggggcagccgccacggcggcgacca 34579887
>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0690B02 Length = 153116 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 529 ccactgcttcctctactacaagggcttcctcgccctgcaggcccaccgcgccgcgcacgc 588 ||||||| ||||| |||||||||||||||||||| | |||||||| |||| |||||||| Sbjct: 32236 ccactgcctcctcaactacaagggcttcctcgccatccaggcccagcgcgtcgcgcacgt 32295 Query: 589 gctctgg 595 ||||||| Sbjct: 32296 gctctgg 32302
>dbj|AK111356.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-H01, full insert sequence Length = 891 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 529 ccactgcttcctctactacaagggcttcctcgccctgcaggcccaccgcgccgcgcacgc 588 ||||||| ||||| |||||||||||||||||||| | |||||||| |||| |||||||| Sbjct: 308 ccactgcctcctcaactacaagggcttcctcgccatccaggcccagcgcgtcgcgcacgt 367 Query: 589 gctctgg 595 ||||||| Sbjct: 368 gctctgg 374
>dbj|AK071186.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086D18, full insert sequence Length = 1961 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 529 ccactgcttcctctactacaagggcttcctcgccctgcaggcccaccgcgccgcgcacgc 588 ||||||| ||||| |||||||||||||||||||| | |||||||| |||| |||||||| Sbjct: 464 ccactgcctcctcaactacaagggcttcctcgccatccaggcccagcgcgtcgcgcacgt 523 Query: 589 gctctgg 595 ||||||| Sbjct: 524 gctctgg 530
>gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E05, complete sequence Length = 196284 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Minus Query: 537 tcctctactacaagggcttcctcgccctgcaggcccaccgcg 578 ||||| ||| |||||||||||||||| | ||||| ||||||| Sbjct: 125173 tcctcaacttcaagggcttcctcgccatccaggcgcaccgcg 125132 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 478 cgccgacctcctcgcggcgcgcgaccgcgacccggcatgcg 518 ||||||||||||||| || ||| |||||||||||| |||| Sbjct: 125232 cgccgacctcctcgccgcccgctcccgcgacccggcctgcg 125192
>emb|AL158838.12| Human DNA sequence from clone RP11-161I10 on chromosome 1 Contains part of a novel gene and the 5' end of a novel gene, complete sequence Length = 170326 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 64 ttccctctcactttctctctct 85 |||||||||||||||||||||| Sbjct: 88690 ttccctctcactttctctctct 88711
>emb|CR352326.5| Zebrafish DNA sequence from clone CH211-105K20 in linkage group 13, complete sequence Length = 174828 Score = 44.1 bits (22), Expect = 0.54 Identities = 28/30 (93%) Strand = Plus / Plus Query: 61 cagttccctctcactttctctctctagctg 90 |||||||||||| ||||||||| ||||||| Sbjct: 100219 cagttccctctctctttctctcactagctg 100248
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Minus Query: 536 ttcctctactacaagggcttcctcgccctgcaggcccaccgc 577 |||||||||| ||||||||||| ||| ||||| |||||||| Sbjct: 1994337 ttcctctacttcaagggcttccacgcggtgcagacccaccgc 1994296
>gb|AC024329.9| Homo sapiens, clone RP11-30P9, complete sequence Length = 158921 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 64 ttccctctcactttctctctct 85 |||||||||||||||||||||| Sbjct: 141496 ttccctctcactttctctctct 141517
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Minus Query: 537 tcctctactacaagggcttcctcgccctgcaggcccaccgcg 578 ||||| ||| |||||||||||||||| | ||||| ||||||| Sbjct: 26274125 tcctcaacttcaagggcttcctcgccatccaggcgcaccgcg 26274084 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 478 cgccgacctcctcgcggcgcgcgaccgcgacccggcatgcg 518 ||||||||||||||| || ||| |||||||||||| |||| Sbjct: 26274184 cgccgacctcctcgccgcccgctcccgcgacccggcctgcg 26274144
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 432 tcgtcggcgcgctggccgcgca 453 |||||||||||||||||||||| Sbjct: 1563833 tcgtcggcgcgctggccgcgca 1563812
>dbj|AP002848.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1670H7 Length = 183125 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 64 ttccctctcactttctctctct 85 |||||||||||||||||||||| Sbjct: 22632 ttccctctcactttctctctct 22653
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 gtcggcgcgctggccgcgcac 454 ||||||||||||||||||||| Sbjct: 1209274 gtcggcgcgctggccgcgcac 1209254
>ref|XM_462958.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3093 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 399 gcgcgctgccgcaggacgcgctccg 423 |||||| |||||||||||||||||| Sbjct: 482 gcgcgccgccgcaggacgcgctccg 506
>ref|XM_472686.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1563 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 cgtcggcgcgctggccgcgcacccggagg 461 |||||||||| ||||||||||| |||||| Sbjct: 751 cgtcggcgcggtggccgcgcacgcggagg 723
>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete sequence Length = 151269 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 399 gcgcgctgccgcaggacgcgctccg 423 |||||| |||||||||||||||||| Sbjct: 117820 gcgcgccgccgcaggacgcgctccg 117844
>gb|AC154354.2| Mus musculus BAC clone RP23-203C5 from chromosome 14, complete sequence Length = 238278 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 tccctctcactttctctctct 85 ||||||||||||||||||||| Sbjct: 161438 tccctctcactttctctctct 161418
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 333 tcctgtcgcacccgtcgctggaggc 357 ||||||||||| ||||||||||||| Sbjct: 977224 tcctgtcgcacgcgtcgctggaggc 977248
>gb|AF360731.1| Sinorhizobium meliloti thymidine kinase (tdk) gene, partial cds; and putative betaine transporter proU operon, complete sequence Length = 4311 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 458 gaggcgatccgccacacgcgc 478 ||||||||||||||||||||| Sbjct: 91 gaggcgatccgccacacgcgc 111
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 333 tcctgtcgcacccgtcgctggaggc 357 ||||||||||| ||||||||||||| Sbjct: 2019025 tcctgtcgcacgcgtcgctggaggc 2019049
>gb|AC144945.4| Mus musculus BAC clone RP23-334D20 from chromosome 19, complete sequence Length = 233962 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 65 tccctctcactttctctctctagct 89 |||||||| |||||||||||||||| Sbjct: 212846 tccctctctctttctctctctagct 212822
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 agccgctgctgggcatgctct 320 ||||||||||||||||||||| Sbjct: 4124742 agccgctgctgggcatgctct 4124722 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 394 ccagggcgcgctgccgcaggacgcg 418 ||||| ||||||||||||||||||| Sbjct: 2273997 ccaggccgcgctgccgcaggacgcg 2273973
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 558 tcgccctgcaggcccaccgcgccgc 582 |||||||||| |||||||||||||| Sbjct: 5108794 tcgccctgcacgcccaccgcgccgc 5108770
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 458 gaggcgatccgccacacgcgc 478 ||||||||||||||||||||| Sbjct: 208180 gaggcgatccgccacacgcgc 208200
>gb|AC124192.4| Mus musculus BAC clone RP23-275N17 from 19, complete sequence Length = 166455 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 tccctctcactttctctctctagct 89 |||||||| |||||||||||||||| Sbjct: 102418 tccctctctctttctctctctagct 102442
>gb|AY349011.1| Burkholderia cepacia phage Bcep22, complete genome Length = 63882 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 cgcggccgtgaacgggagcgg 228 ||||||||||||||||||||| Sbjct: 16591 cgcggccgtgaacgggagcgg 16571
>emb|AL365394.26| Human DNA sequence from clone RP11-275D4 on chromosome 13, complete sequence Length = 89746 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 ccctctcactttctctctcta 86 ||||||||||||||||||||| Sbjct: 33815 ccctctcactttctctctcta 33835
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 333 tcctgtcgcacccgtcgctggaggc 357 ||||||||||| ||||||||||||| Sbjct: 3441438 tcctgtcgcacgcgtcgctggaggc 3441414
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 333 tcctgtcgcacccgtcgctggaggc 357 ||||||||||| ||||||||||||| Sbjct: 2357742 tcctgtcgcacgcgtcgctggaggc 2357718
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 cgtcggcgcgctggccgcgcacccggagg 461 |||||||||| ||||||||||| |||||| Sbjct: 173365 cgtcggcgcggtggccgcgcacgcggagg 173337
>emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027G07, complete sequence Length = 179021 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 cgtcggcgcgctggccgcgcacccggagg 461 |||||||||| ||||||||||| |||||| Sbjct: 11710 cgtcggcgcggtggccgcgcacgcggagg 11682
>gb|AC136504.23| Medicago truncatula clone mth2-13m6, complete sequence Length = 107180 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 ttccctctcactttctctctc 84 ||||||||||||||||||||| Sbjct: 83072 ttccctctcactttctctctc 83092
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 cgtcggcgcgctggccgcgcacccggagg 461 |||||||||| ||||||||||| |||||| Sbjct: 22569610 cgtcggcgcggtggccgcgcacgcggagg 22569582
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ctctcactttctctctctagc 88 ||||||||||||||||||||| Sbjct: 23931854 ctctcactttctctctctagc 23931874
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 ctctcactttctctctctagctgcg 92 ||||| ||||||||||||||||||| Sbjct: 21460839 ctctctctttctctctctagctgcg 21460863
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 ctggaggccgccctcgcggcg 370 ||||||||||||||||||||| Sbjct: 3548487 ctggaggccgccctcgcggcg 3548507 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 gcgctggccgcgcacccgga 459 |||||||||||||||||||| Sbjct: 7912634 gcgctggccgcgcacccgga 7912653
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 gctgtacggcgaggcgcaggc 285 ||||||||||||||||||||| Sbjct: 4270545 gctgtacggcgaggcgcaggc 4270565 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 569 gcccaccgcgccgcgcacgcgctc 592 ||||||||||||||||| |||||| Sbjct: 4270510 gcccaccgcgccgcgcaggcgctc 4270533 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ggagctgtacggcgaggcgc 281 |||||||||||||||||||| Sbjct: 90763 ggagctgtacggcgaggcgc 90782
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 ctctcactttctctctctagctgcg 92 ||||| ||||||||||||||||||| Sbjct: 18023 ctctctctttctctctctagctgcg 18047
>dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0513E02 Length = 141477 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 ctctcactttctctctctagctgcg 92 ||||| ||||||||||||||||||| Sbjct: 95339 ctctctctttctctctctagctgcg 95363
>emb|BX004813.5| Zebrafish DNA sequence from clone CH211-55K22 in linkage group 8, complete sequence Length = 148955 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 tccctctcactttctctctct 85 ||||||||||||||||||||| Sbjct: 662 tccctctcactttctctctct 642
>dbj|AK072093.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116B15, full insert sequence Length = 4161 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 399 gcgcgctgccgcaggacgcgctccg 423 |||||| |||||||||||||||||| Sbjct: 725 gcgcgccgccgcaggacgcgctccg 749
>emb|CR847873.12| Zebrafish DNA sequence from clone DKEY-283N20 in linkage group 20, complete sequence Length = 12025 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 tccctctcactttctctctct 85 ||||||||||||||||||||| Sbjct: 1339 tccctctcactttctctctct 1359
>emb|BX649261.3| Zebrafish DNA sequence from clone DKEY-215A8 in linkage group 4, complete sequence Length = 147890 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 tccctctcactttctctctct 85 ||||||||||||||||||||| Sbjct: 110706 tccctctcactttctctctct 110726
>emb|BX005306.20| Zebrafish DNA sequence from clone DKEY-78C7 in linkage group 20, complete sequence Length = 135228 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 tccctctcactttctctctct 85 ||||||||||||||||||||| Sbjct: 90693 tccctctcactttctctctct 90673
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 tggaggccgccctcgcggcgc 371 ||||||||||||||||||||| Sbjct: 3430330 tggaggccgccctcgcggcgc 3430310
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ctctcactttctctctctagc 88 ||||||||||||||||||||| Sbjct: 23860060 ctctcactttctctctctagc 23860080
>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144767 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 ctctcactttctctctctagc 88 ||||||||||||||||||||| Sbjct: 41329 ctctcactttctctctctagc 41309
>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 176388 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 ctctcactttctctctctagc 88 ||||||||||||||||||||| Sbjct: 155542 ctctcactttctctctctagc 155522
>gb|U84890.1|MCU84890 Mesembryanthemum crystallinum putative phosphate permease mRNA, complete cds Length = 2074 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 cctctcactttctctctctag 87 ||||||||||||||||||||| Sbjct: 99 cctctcactttctctctctag 119
>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster Length = 104326 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 ctggaggccgccctcgcggcg 370 ||||||||||||||||||||| Sbjct: 89318 ctggaggccgccctcgcggcg 89298
>gb|AC153795.1| Mus musculus BAC RP23-276L17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 182285 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ccctctcactttctctctct 85 |||||||||||||||||||| Sbjct: 124252 ccctctcactttctctctct 124271
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cctcgtcggcgcgctggccg 449 |||||||||||||||||||| Sbjct: 917108 cctcgtcggcgcgctggccg 917127
>gb|AC123071.3| Mus musculus BAC clone RP23-70P8 from chromosome 13, complete sequence Length = 252384 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 ccctctcactttctctctctagct 89 ||||||| |||||||||||||||| Sbjct: 169622 ccctctctctttctctctctagct 169599
>ref|XM_959676.1| Neurospora crassa OR74A hypothetical protein (NCU00853.1) partial mRNA Length = 1281 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 acacgcgcgccgacctcctc 490 |||||||||||||||||||| Sbjct: 86 acacgcgcgccgacctcctc 105
>ref|XM_325032.1| Neurospora crassa OR74A hypothetical protein (NCU00853.1) partial mRNA Length = 1281 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 acacgcgcgccgacctcctc 490 |||||||||||||||||||| Sbjct: 86 acacgcgcgccgacctcctc 105
>gb|AY070220.1| Solanum tuberosum 14-3-3 protein isoform 16R gene, complete cds Length = 4829 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ctctcactttctctctctag 87 |||||||||||||||||||| Sbjct: 1001 ctctcactttctctctctag 1020
>gb|AE007265.1| Sinorhizobium meliloti 1021 plasmid pSymA section 71 of 121 of the complete plasmid sequence Length = 10695 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 427 catcctcgtcggcgcgctggccgc 450 |||| ||||||||||||||||||| Sbjct: 5730 catcgtcgtcggcgcgctggccgc 5707
>gb|AC129328.4| Mus musculus BAC clone RP23-15O6 from chromosome 17, complete sequence Length = 234041 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ccctctcactttctctctct 85 |||||||||||||||||||| Sbjct: 201973 ccctctcactttctctctct 201992
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 gctggccgcgcacccggagg 461 |||||||||||||||||||| Sbjct: 2470493 gctggccgcgcacccggagg 2470512
>ref|XM_823773.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.02.5780) partial mRNA Length = 1245 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 tccagggcgcgctgccgcag 412 |||||||||||||||||||| Sbjct: 749 tccagggcgcgctgccgcag 730
>gb|AC116123.7| Mus musculus chromosome 6, clone RP23-87I4, complete sequence Length = 205411 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccctctcactttctctctct 85 |||||||||||||||||||| Sbjct: 98622 ccctctcactttctctctct 98603
>emb|BX957326.8| Zebrafish DNA sequence from clone DKEY-31B16 in linkage group 23, complete sequence Length = 259092 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ttccctctcactttctctct 83 |||||||||||||||||||| Sbjct: 243590 ttccctctcactttctctct 243571
>gb|AC119640.13| Rattus norvegicus 13 BAC CH230-444B7 (Children's Hospital Oakland Research Institute) complete sequence Length = 120319 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccctctcactttctctctct 85 |||||||||||||||||||| Sbjct: 70859 ccctctcactttctctctct 70840
>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome Length = 154746 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 ggcgcgctgccgcaggacgc 417 |||||||||||||||||||| Sbjct: 101421 ggcgcgctgccgcaggacgc 101440
>emb|Y11685.1|ST16R1433 Solanum tuberosum mRNA for 14-3-3 protein, isolate 16R Length = 1219 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ctctcactttctctctctag 87 |||||||||||||||||||| Sbjct: 35 ctctcactttctctctctag 54
>emb|X95904.2|LETFT6 L.esculentum mRNA for 14-3-3 protein, TFT6 Length = 1152 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ctctcactttctctctctag 87 |||||||||||||||||||| Sbjct: 25 ctctcactttctctctctag 44
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gcgaggcgcaggccgacgcg 292 |||||||||||||||||||| Sbjct: 149866 gcgaggcgcaggccgacgcg 149847
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 cggcgcgctggccgcgcacc 455 |||||||||||||||||||| Sbjct: 12533 cggcgcgctggccgcgcacc 12514
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 gtcggcgcgctggccgcgca 453 |||||||||||||||||||| Sbjct: 112330 gtcggcgcgctggccgcgca 112311
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gcgaggcgcaggccgacgcg 292 |||||||||||||||||||| Sbjct: 69071 gcgaggcgcaggccgacgcg 69052
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 cggcgcgctggccgcgcacc 455 |||||||||||||||||||| Sbjct: 269313 cggcgcgctggccgcgcacc 269294
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 gtcggcgcgctggccgcgca 453 |||||||||||||||||||| Sbjct: 116520 gtcggcgcgctggccgcgca 116501
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gcgaggcgcaggccgacgcg 292 |||||||||||||||||||| Sbjct: 56914 gcgaggcgcaggccgacgcg 56895
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 cggcgcgctggccgcgcacc 455 |||||||||||||||||||| Sbjct: 202970 cggcgcgctggccgcgcacc 202951
>emb|BX072541.1| Mouse DNA sequence from clone RP23-189G9 on chromosome 4 Contains a novel gene and a aldo-keto reductase family 1 member B8 (Akr1b8) pseudogene, complete sequence Length = 179699 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccctctcactttctctctct 85 |||||||||||||||||||| Sbjct: 79329 ccctctcactttctctctct 79310
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 gctgctgggcatgctctactacga 327 ||||||||||| |||||||||||| Sbjct: 1169846 gctgctgggcaagctctactacga 1169823
>dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432B10 Length = 131918 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 225 gcgggggcagctgcaacggcggcgacca 252 ||||||||||| || ||||||||||||| Sbjct: 77154 gcgggggcagccgccacggcggcgacca 77181
>dbj|AB198181.1| Streptomyces sp. 139 ste22b, ste23, ste24 genes for putative membrane protein, putative dTDP-4-dehydrorhamnose 3,5-epimerase, putative aminotransferase, complete cds Length = 3138 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 tcgtcggcgcgctggccgcg 451 |||||||||||||||||||| Sbjct: 568 tcgtcggcgcgctggccgcg 587
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 cgcgctggccgcgcacccgg 458 |||||||||||||||||||| Sbjct: 5338252 cgcgctggccgcgcacccgg 5338271
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 cgtcggcgcgctggccgcgc 452 |||||||||||||||||||| Sbjct: 1818063 cgtcggcgcgctggccgcgc 1818044
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 568 ggcccaccgcgccgcgcacg 587 |||||||||||||||||||| Sbjct: 3467216 ggcccaccgcgccgcgcacg 3467197
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 gccgacgcggaggacgagcc 303 |||||||||||||||||||| Sbjct: 1160930 gccgacgcggaggacgagcc 1160949
>gb|AC156035.5| Mus musculus BAC clone RP23-302M20 from chromosome 12, complete sequence Length = 187168 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tccctctcactttctctctc 84 |||||||||||||||||||| Sbjct: 133722 tccctctcactttctctctc 133741
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 cgagccgctgctgggcatgc 317 |||||||||||||||||||| Sbjct: 3210332 cgagccgctgctgggcatgc 3210351
>dbj|AB213024.1| Desulfovibrio vulgaris rrm-1, rpL31, hyp001, prfA, hemk genes for rRNA methylase, ribosomal protein L31, hypothetical protein, peptide release factor 1, HemK protein, complete cds Length = 5528 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 559 cgccctgcaggcccaccgcgccgc 582 |||||||| ||||||||||||||| Sbjct: 4496 cgccctgctggcccaccgcgccgc 4519
>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07 Length = 172483 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 225 gcgggggcagctgcaacggcggcgacca 252 ||||||||||| || ||||||||||||| Sbjct: 31877 gcgggggcagccgccacggcggcgacca 31904
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 cgtcggcgcgctggccgcgc 452 |||||||||||||||||||| Sbjct: 3334687 cgtcggcgcgctggccgcgc 3334668 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 accgcaccgacgggcgcggc 213 |||||||||||||||||||| Sbjct: 2177598 accgcaccgacgggcgcggc 2177617 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 cgtcggcgcgctggccgcgc 452 |||||||||||||||||||| Sbjct: 770120 cgtcggcgcgctggccgcgc 770139
>emb|BX005163.13| Mouse DNA sequence from clone RP23-408E16 on chromosome X, complete sequence Length = 188605 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccctctcactttctctctct 85 |||||||||||||||||||| Sbjct: 90266 ccctctcactttctctctct 90247
>emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chromosome 2, complete sequence Length = 238545 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 58 cagcagttccctctcactttctctctct 85 ||||||||| ||||| |||||||||||| Sbjct: 107793 cagcagttctctctctctttctctctct 107766
>emb|AJ549786.1|SMA549786 Serratia marcescens flanking end of transposon insertion site, mutant 18D4, sequence from primer JEP131 Length = 186 Score = 40.1 bits (20), Expect = 8.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 276 aggcgcaggccgacgcggaggacgagccgctgctgg 311 |||||||||||| | ||||||||| || |||||||| Sbjct: 51 aggcgcaggccgccccggaggacgggctgctgctgg 86
>emb|AJ549780.1|SMA549780 Serratia marcescens flanking end of transposon insertion site, mutant 10F7, sequence from primer JEP131 Length = 188 Score = 40.1 bits (20), Expect = 8.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 276 aggcgcaggccgacgcggaggacgagccgctgctgg 311 |||||||||||| | ||||||||| || |||||||| Sbjct: 55 aggcgcaggccgccccggaggacgggctgctgctgg 90
>dbj|AK073388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043F13, full insert sequence Length = 1744 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 225 gcgggggcagctgcaacggcggcgacca 252 ||||||||||| || ||||||||||||| Sbjct: 511 gcgggggcagccgccacggcggcgacca 484
>ref|NM_211944.1| Eremothecium gossypii AGR216Wp (AGR216W), mRNA Length = 375 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 gccgacgcggaggacgagcc 303 |||||||||||||||||||| Sbjct: 298 gccgacgcggaggacgagcc 317
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 gcaggcccaccgcgccgcgc 584 |||||||||||||||||||| Sbjct: 130802 gcaggcccaccgcgccgcgc 130821
>gb|AC155287.6| Mus musculus 6 BAC RP23-103G18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 221335 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccctctcactttctctctct 85 |||||||||||||||||||| Sbjct: 20291 ccctctcactttctctctct 20272
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 gcaggcccaccgcgccgcgc 584 |||||||||||||||||||| Sbjct: 130802 gcaggcccaccgcgccgcgc 130821
>dbj|AP000879.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-805J14, complete sequence Length = 169725 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ccctctcactttctctctct 85 |||||||||||||||||||| Sbjct: 18796 ccctctcactttctctctct 18815
>gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195726 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ccctctcactttctctctct 85 |||||||||||||||||||| Sbjct: 68150 ccctctcactttctctctct 68169
>gb|AC127244.3| Mus musculus BAC clone RP24-416M6 from 6, complete sequence Length = 165720 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ccctctcactttctctctct 85 |||||||||||||||||||| Sbjct: 8487 ccctctcactttctctctct 8506
>gb|AC154200.1| Mus musculus BAC clone RP24-81G10 from 17, complete sequence Length = 216721 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ccctctcactttctctctct 85 |||||||||||||||||||| Sbjct: 46396 ccctctcactttctctctct 46415
>gb|DQ280500.1| Streptomyces olindensis DAUFPE 5622 cosmomycin gene cluster, partial sequence Length = 14080 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cggaggacgagccgctgctg 310 |||||||||||||||||||| Sbjct: 12440 cggaggacgagccgctgctg 12459
>gb|AC151054.2| Mus musculus BAC clone RP23-147K16 from 13, complete sequence Length = 220038 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ccctctcactttctctctctagct 89 ||||||| |||||||||||||||| Sbjct: 140560 ccctctctctttctctctctagct 140583
>emb|AL772160.8| Mouse DNA sequence from clone RP23-85H5 on chromosome 4, complete sequence Length = 228375 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 agttccctctcactttctctctct 85 ||||| |||||||||||||||||| Sbjct: 181796 agttctctctcactttctctctct 181773
>dbj|AB054887.1| Streptomyces violaceus rhoF, rhoG, rhoH, rhoI genes, partial and complete cds Length = 4133 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cggaggacgagccgctgctg 310 |||||||||||||||||||| Sbjct: 2629 cggaggacgagccgctgctg 2648 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,954,848 Number of Sequences: 3902068 Number of extensions: 3954848 Number of successful extensions: 134735 Number of sequences better than 10.0: 117 Number of HSP's better than 10.0 without gapping: 122 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128073 Number of HSP's gapped (non-prelim): 6654 length of query: 618 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 595 effective length of database: 17,143,297,704 effective search space: 10200262133880 effective search space used: 10200262133880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
