ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart40h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190713.1| Oryza sativa (japonica cultivar-group), predic... 78 4e-11
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
3dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
4dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
5dbj|AK105529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 4e-11
6gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genom... 42 2.0
7ref|XM_874397.1| PREDICTED: Bos taurus similar to splicing facto... 42 2.0
8ref|XM_874322.1| PREDICTED: Bos taurus similar to splicing facto... 42 2.0
9ref|XM_874236.1| PREDICTED: Bos taurus similar to splicing facto... 42 2.0
10ref|XM_874148.1| PREDICTED: Bos taurus similar to splicing facto... 42 2.0
11ref|XM_873967.1| PREDICTED: Bos taurus similar to splicing facto... 42 2.0
12ref|XM_873871.1| PREDICTED: Bos taurus similar to splicing facto... 42 2.0
13ref|XM_873776.1| PREDICTED: Bos taurus similar to splicing facto... 42 2.0
14ref|XM_864599.1| PREDICTED: Bos taurus similar to splicing facto... 42 2.0
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.0
16ref|XM_857000.1| PREDICTED: Canis familiaris similar to PDZ prot... 42 2.0
17emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete ... 42 2.0
18emb|BX640433.1| Bordetella parapertussis strain 12822, complete ... 42 2.0
19emb|BX640418.1| Bordetella pertussis strain Tohama I, complete g... 42 2.0
20gb|AE012205.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 2.0
21gb|CP000264.1| Jannaschia sp. CCS1, complete genome 42 2.0
22gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 2.0
23gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 2.0
24dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
25gb|AC004828.2|AC004828 Homo sapiens clone DJ0514A23, complete se... 42 2.0
26emb|AL392024.3|CNS06C8K Human chromosome 14 DNA sequence BAC R-1... 42 2.0
27ref|XM_511417.1| PREDICTED: Pan troglodytes similar to TBP-assoc... 40 8.0
28ref|NM_185679.1| Oryza sativa (japonica cultivar-group), Ozsa803... 40 8.0
29ref|XM_466090.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.0
30gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 8.0
31ref|XM_864476.1| PREDICTED: Bos taurus similar to solute carrier... 40 8.0
32ref|XM_616640.2| PREDICTED: Bos taurus similar to dpy-19-like 1,... 40 8.0
33gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 8.0
34gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, com... 40 8.0
35gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 8.0
36emb|AL163206.2|HS21C006 Homo sapiens chromosome 21 segment HS21C006 40 8.0
37gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic m... 40 8.0
38gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 8.0
39emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 8.0
40emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 40 8.0
41emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 8.0
42gb|AE005966.1| Caulobacter crescentus CB15 section 292 of 359 of... 40 8.0
43gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 8.0
44dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
45dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
46dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
47emb|AL606630.3|OSJN00041 Oryza sativa genomic DNA, chromosome 4,... 40 8.0
48emb|AL731578.2|OSJN00229 Oryza sativa genomic DNA, chromosome 4,... 40 8.0
49gb|AE004861.1| Pseudomonas aeruginosa PAO1, section 422 of 529 o... 40 8.0
50gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 8.0
51dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
52dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 8.0
53dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
54dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
55dbj|BS000009.1| Pan troglodytes chromosome 22 clone:PTB-118J15, ... 40 8.0
56dbj|AK102681.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
57dbj|AK099635.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
58gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 8.0
59gb|AF130249.1|AF130249 Homo sapiens PAC 126N20 derived from chro... 40 8.0
60gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 8.0
61gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 8.0 
>ref|NM_190713.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1473

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 86/101 (85%), Gaps = 3/101 (2%)
 Strand = Plus / Plus

                                                                       
Query: 488 ccggtgctcttcgccgcgctttaccagctcccgccccccgcgggtggcg---cggcgctg 544
           ||||||||||||||| |||| ||| |||| ||||| || |||||||| |   ||||||||
Sbjct: 439 ccggtgctcttcgccacgctctacgagctgccgccgccagcgggtggggggtcggcgctg 498

                                                    
Query: 545 ttcatcctgatccacacggccgtatgtgaccgcgcggcgtc 585
           ||| ||| ||||||||||||||  || ||||||||||||||
Sbjct: 499 ttcgtccggatccacacggccgcgtgcgaccgcgcggcgtc 539



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 412 cgacttccactccctcctcgagcgcgagatcaaccgcaacccgtgggcggccgccgc 468
           ||||||||  ||||||||||||| |||| ||||||||||||| ||| | ||||||||
Sbjct: 342 cgacttcccttccctcctcgagcacgagctcaaccgcaacccatggaccgccgccgc 398



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 82/101 (81%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtggcgctcccgcgctctgcgcggcacggagtacagctggtgccgcgccgctccaggcgg 225
           ||||||| |||||||  || |||| | ||||||| |||||| ||||||||  || |||||
Sbjct: 54  gtggcgcgcccgcgcggtgggcgggatggagtacggctggtaccgcgccgtgccgggcgg 113

                                                    
Query: 226 aaccggtacctcggtcatcgcgctccgcctctcgcgtggcg 266
           |||||| ||  || |  |||||||||||||| |||| ||||
Sbjct: 114 aaccggcacgacgctgctcgcgctccgcctcgcgcgcggcg 154
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 86/101 (85%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                            
Query: 488      ccggtgctcttcgccgcgctttaccagctcccgccccccgcgggtggcg---cggcgctg 544
                ||||||||||||||| |||| ||| |||| ||||| || |||||||| |   ||||||||
Sbjct: 37302953 ccggtgctcttcgccacgctctacgagctgccgccgccagcgggtggggggtcggcgctg 37302894

                                                         
Query: 545      ttcatcctgatccacacggccgtatgtgaccgcgcggcgtc 585
                ||| ||| ||||||||||||||  || ||||||||||||||
Sbjct: 37302893 ttcgtccggatccacacggccgcgtgcgaccgcgcggcgtc 37302853



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                         
Query: 412      cgacttccactccctcctcgagcgcgagatcaaccgcaacccgtgggcggccgccgc 468
                ||||||||  ||||||||||||| |||| ||||||||||||| ||| | ||||||||
Sbjct: 37303050 cgacttcccttccctcctcgagcacgagctcaaccgcaacccatggaccgccgccgc 37302994



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                            
Query: 166      gtggcgctcccgcgctctgcgcggcacggagtacagctggtgccgcgccgctccaggcgg 225
                ||||||| |||||||  || |||| | ||||||| |||||| ||||||||  || |||||
Sbjct: 37303338 gtggcgcgcccgcgcggtgggcgggatggagtacggctggtaccgcgccgtgccgggcgg 37303279

                                                         
Query: 226      aaccggtacctcggtcatcgcgctccgcctctcgcgtggcg 266
                |||||| ||  || |  |||||||||||||| |||| ||||
Sbjct: 37303278 aaccggcacgacgctgctcgcgctccgcctcgcgcgcggcg 37303238
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>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0423B08
          Length = 151490

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 86/101 (85%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                         
Query: 488   ccggtgctcttcgccgcgctttaccagctcccgccccccgcgggtggcg---cggcgctg 544
             ||||||||||||||| |||| ||| |||| ||||| || |||||||| |   ||||||||
Sbjct: 14987 ccggtgctcttcgccacgctctacgagctgccgccgccagcgggtggggggtcggcgctg 14928

                                                      
Query: 545   ttcatcctgatccacacggccgtatgtgaccgcgcggcgtc 585
             ||| ||| ||||||||||||||  || ||||||||||||||
Sbjct: 14927 ttcgtccggatccacacggccgcgtgcgaccgcgcggcgtc 14887



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 412   cgacttccactccctcctcgagcgcgagatcaaccgcaacccgtgggcggccgccgc 468
             ||||||||  ||||||||||||| |||| ||||||||||||| ||| | ||||||||
Sbjct: 15084 cgacttcccttccctcctcgagcacgagctcaaccgcaacccatggaccgccgccgc 15028



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                         
Query: 166   gtggcgctcccgcgctctgcgcggcacggagtacagctggtgccgcgccgctccaggcgg 225
             ||||||| |||||||  || |||| | ||||||| |||||| ||||||||  || |||||
Sbjct: 15372 gtggcgcgcccgcgcggtgggcgggatggagtacggctggtaccgcgccgtgccgggcgg 15313

                                                      
Query: 226   aaccggtacctcggtcatcgcgctccgcctctcgcgtggcg 266
             |||||| ||  || |  |||||||||||||| |||| ||||
Sbjct: 15312 aaccggcacgacgctgctcgcgctccgcctcgcgcgcggcg 15272
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>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0679C12
          Length = 153666

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 86/101 (85%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                          
Query: 488    ccggtgctcttcgccgcgctttaccagctcccgccccccgcgggtggcg---cggcgctg 544
              ||||||||||||||| |||| ||| |||| ||||| || |||||||| |   ||||||||
Sbjct: 139942 ccggtgctcttcgccacgctctacgagctgccgccgccagcgggtggggggtcggcgctg 139883

                                                       
Query: 545    ttcatcctgatccacacggccgtatgtgaccgcgcggcgtc 585
              ||| ||| ||||||||||||||  || ||||||||||||||
Sbjct: 139882 ttcgtccggatccacacggccgcgtgcgaccgcgcggcgtc 139842



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                       
Query: 412    cgacttccactccctcctcgagcgcgagatcaaccgcaacccgtgggcggccgccgc 468
              ||||||||  ||||||||||||| |||| ||||||||||||| ||| | ||||||||
Sbjct: 140039 cgacttcccttccctcctcgagcacgagctcaaccgcaacccatggaccgccgccgc 139983



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                          
Query: 166    gtggcgctcccgcgctctgcgcggcacggagtacagctggtgccgcgccgctccaggcgg 225
              ||||||| |||||||  || |||| | ||||||| |||||| ||||||||  || |||||
Sbjct: 140327 gtggcgcgcccgcgcggtgggcgggatggagtacggctggtaccgcgccgtgccgggcgg 140268

                                                       
Query: 226    aaccggtacctcggtcatcgcgctccgcctctcgcgtggcg 266
              |||||| ||  || |  |||||||||||||| |||| ||||
Sbjct: 140267 aaccggcacgacgctgctcgcgctccgcctcgcgcgcggcg 140227
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>dbj|AK105529.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G08, full
           insert sequence
          Length = 1804

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 86/101 (85%), Gaps = 3/101 (2%)
 Strand = Plus / Plus

                                                                       
Query: 488 ccggtgctcttcgccgcgctttaccagctcccgccccccgcgggtggcg---cggcgctg 544
           ||||||||||||||| |||| ||| |||| ||||| || |||||||| |   ||||||||
Sbjct: 621 ccggtgctcttcgccacgctctacgagctgccgccgccagcgggtggggggtcggcgctg 680

                                                    
Query: 545 ttcatcctgatccacacggccgtatgtgaccgcgcggcgtc 585
           ||| ||| ||||||||||||||  || ||||||||||||||
Sbjct: 681 ttcgtccggatccacacggccgcgtgcgaccgcgcggcgtc 721



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 412 cgacttccactccctcctcgagcgcgagatcaaccgcaacccgtgggcggccgccgc 468
           ||||||||  ||||||||||||| |||| ||||||||||||| ||| | ||||||||
Sbjct: 524 cgacttcccttccctcctcgagcacgagctcaaccgcaacccatggaccgccgccgc 580



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 82/101 (81%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtggcgctcccgcgctctgcgcggcacggagtacagctggtgccgcgccgctccaggcgg 225
           ||||||| |||||||  || |||| | ||||||| |||||| ||||||||  || |||||
Sbjct: 236 gtggcgcgcccgcgcggtgggcgggatggagtacggctggtaccgcgccgtgccgggcgg 295

                                                    
Query: 226 aaccggtacctcggtcatcgcgctccgcctctcgcgtggcg 266
           |||||| ||  || |  |||||||||||||| |||| ||||
Sbjct: 296 aaccggcacgacgctgctcgcgctccgcctcgcgcgcggcg 336
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>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete
             sequence
          Length = 150155

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 193   ggagtacagctggtgccgcgccgctccag 221
             ||||| ||||||||||||||| |||||||
Sbjct: 32513 ggagtgcagctggtgccgcgctgctccag 32485
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>ref|XM_874397.1| PREDICTED: Bos taurus similar to splicing factor,
           arginine/serine-rich 12, transcript variant 9
           (LOC507801), mRNA
          Length = 2478

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 537 cggcgctgttcatcctgatcc 557
           |||||||||||||||||||||
Sbjct: 92  cggcgctgttcatcctgatcc 72
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>ref|XM_874322.1| PREDICTED: Bos taurus similar to splicing factor,
           arginine/serine-rich 12, transcript variant 8
           (LOC507801), mRNA
          Length = 2467

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 537 cggcgctgttcatcctgatcc 557
           |||||||||||||||||||||
Sbjct: 57  cggcgctgttcatcctgatcc 37
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>ref|XM_874236.1| PREDICTED: Bos taurus similar to splicing factor,
           arginine/serine-rich 12, transcript variant 7
           (LOC507801), mRNA
          Length = 1207

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 537 cggcgctgttcatcctgatcc 557
           |||||||||||||||||||||
Sbjct: 92  cggcgctgttcatcctgatcc 72
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>ref|XM_874148.1| PREDICTED: Bos taurus similar to splicing factor,
           arginine/serine-rich 12, transcript variant 6
           (LOC507801), mRNA
          Length = 2449

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 537 cggcgctgttcatcctgatcc 557
           |||||||||||||||||||||
Sbjct: 57  cggcgctgttcatcctgatcc 37
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>ref|XM_873967.1| PREDICTED: Bos taurus similar to splicing factor,
           arginine/serine-rich 12, transcript variant 5
           (LOC507801), mRNA
          Length = 860

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 537 cggcgctgttcatcctgatcc 557
           |||||||||||||||||||||
Sbjct: 57  cggcgctgttcatcctgatcc 37
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>ref|XM_873871.1| PREDICTED: Bos taurus similar to splicing factor,
           arginine/serine-rich 12, transcript variant 4
           (LOC507801), mRNA
          Length = 640

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 537 cggcgctgttcatcctgatcc 557
           |||||||||||||||||||||
Sbjct: 125 cggcgctgttcatcctgatcc 105
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>ref|XM_873776.1| PREDICTED: Bos taurus similar to splicing factor,
           arginine/serine-rich 12, transcript variant 3
           (LOC507801), mRNA
          Length = 562

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 537 cggcgctgttcatcctgatcc 557
           |||||||||||||||||||||
Sbjct: 59  cggcgctgttcatcctgatcc 39
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>ref|XM_864599.1| PREDICTED: Bos taurus similar to splicing factor,
           arginine/serine-rich 12, transcript variant 2
           (LOC507801), mRNA
          Length = 4002

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 537 cggcgctgttcatcctgatcc 557
           |||||||||||||||||||||
Sbjct: 92  cggcgctgttcatcctgatcc 72
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 193      ggagtacagctggtgccgcgccgctccag 221
                ||||| ||||||||||||||| |||||||
Sbjct: 27271882 ggagtgcagctggtgccgcgctgctccag 27271910
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>ref|XM_857000.1| PREDICTED: Canis familiaris similar to PDZ protein Mrt1, transcript
           variant 3 (LOC483200), mRNA
          Length = 2474

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 417 tccactccctcctcgagcgcg 437
           |||||||||||||||||||||
Sbjct: 73  tccactccctcctcgagcgcg 53
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>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 538    ggcgctgttcatcctgatcca 558
              |||||||||||||||||||||
Sbjct: 300055 ggcgctgttcatcctgatcca 300035
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>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 538    ggcgctgttcatcctgatcca 558
              |||||||||||||||||||||
Sbjct: 237801 ggcgctgttcatcctgatcca 237781
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>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12
          Length = 349346

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 538    ggcgctgttcatcctgatcca 558
              |||||||||||||||||||||
Sbjct: 160417 ggcgctgttcatcctgatcca 160397
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>gb|AE012205.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 113
            of 460 of the complete genome
          Length = 11594

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 453  cgtgggcggccgccgcgcctg 473
            |||||||||||||||||||||
Sbjct: 8628 cgtgggcggccgccgcgcctg 8648
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 536     gcggcgctgttcatcctgatc 556
               |||||||||||||||||||||
Sbjct: 3864838 gcggcgctgttcatcctgatc 3864818
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 453     cgtgggcggccgccgcgcctg 473
               |||||||||||||||||||||
Sbjct: 3798413 cgtgggcggccgccgcgcctg 3798393
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 347    agccccacgctcgccttcccg 367
              |||||||||||||||||||||
Sbjct: 387699 agccccacgctcgccttcccg 387679
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 193      ggagtacagctggtgccgcgccgctccag 221
                ||||| ||||||||||||||| |||||||
Sbjct: 27363205 ggagtgcagctggtgccgcgctgctccag 27363233
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>gb|AC004828.2|AC004828 Homo sapiens clone DJ0514A23, complete sequence
          Length = 183249

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 341   ccctccagccccacgctcgccttcc 365
             |||||| ||||||||||||||||||
Sbjct: 95742 ccctcctgccccacgctcgccttcc 95718
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>emb|AL392024.3|CNS06C8K Human chromosome 14 DNA sequence BAC R-182E21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 146235

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 341   ccctccagccccacgctcgccttcc 365
             |||||| ||||||||||||||||||
Sbjct: 15488 ccctcctgccccacgctcgccttcc 15512
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>ref|XM_511417.1| PREDICTED: Pan troglodytes similar to TBP-associated factor 15
           isoform 1; TATA box-binding protein-associated factor 2N
           (RNA-binding protein 56); TAF15 RNA polymerase II, TATA
           box binding protein (TBP)-associated factor, 68 kD; TATA
           box binding protein (TBP)-associated facto...
           (LOC454590), mRNA
          Length = 1528

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 263 ggcggcgcggcggccgaagc 282
           ||||||||||||||||||||
Sbjct: 771 ggcggcgcggcggccgaagc 752
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>ref|NM_185679.1| Oryza sativa (japonica cultivar-group), Ozsa8030 predicted mRNA
          Length = 3858

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 157  cgcggcggcgtggcgctcccgcgc 180
            ||||||||||| ||||||||||||
Sbjct: 1917 cgcggcggcgtcgcgctcccgcgc 1894
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>ref|XM_466090.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2839

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 55   caactgacgaagcgccacaccacc 78
            |||||||||||| |||||||||||
Sbjct: 1381 caactgacgaagagccacaccacc 1358
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 267     gcgcggcggccgaagccgcg 286
               ||||||||||||||||||||
Sbjct: 3341339 gcgcggcggccgaagccgcg 3341320
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>ref|XM_864476.1| PREDICTED: Bos taurus similar to solute carrier family 2
           (facilitated glucose transporter), member 13
           (LOC613556), mRNA
          Length = 1344

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 tggcggcgcggcggccgaag 281
           ||||||||||||||||||||
Sbjct: 970 tggcggcgcggcggccgaag 951
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>ref|XM_616640.2| PREDICTED: Bos taurus similar to dpy-19-like 1, like (LOC536508),
           mRNA
          Length = 4961

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 518 ccgccccccgcgggtggcgcggcg 541
           |||||||| |||||||||||||||
Sbjct: 209 ccgcccccggcgggtggcgcggcg 186
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    gcgcggcggccgaagccgcg 286
              ||||||||||||||||||||
Sbjct: 645434 gcgcggcggccgaagccgcg 645453
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>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   agggccggcgcggcggcgtg 168
             ||||||||||||||||||||
Sbjct: 63665 agggccggcgcggcggcgtg 63684
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 563     gccgtatgtgaccgcgcggc 582
               ||||||||||||||||||||
Sbjct: 1163095 gccgtatgtgaccgcgcggc 1163114
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>emb|AL163206.2|HS21C006 Homo sapiens chromosome 21 segment HS21C006
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   gtagcagcatggactccagg 151
             ||||||||||||||||||||
Sbjct: 96869 gtagcagcatggactccagg 96850
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>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis
             gene cluster, partial sequence
          Length = 103450

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   gcagcatggactccagggcc 154
             ||||||||||||||||||||
Sbjct: 9991  gcagcatggactccagggcc 10010
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 266     ggcgcggcggccgaagccgc 285
               ||||||||||||||||||||
Sbjct: 3756278 ggcgcggcggccgaagccgc 3756297
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 159     cggcggcgtggcgctcccgc 178
               ||||||||||||||||||||
Sbjct: 4116402 cggcggcgtggcgctcccgc 4116421



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 268     cgcggcggccgaagccgcggtccgcgcc 295
               |||||||  |||||||||||||||||||
Sbjct: 2112822 cgcggcgctcgaagccgcggtccgcgcc 2112795



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    gcgtggcggcgcggcggccg 278
              ||||||||||||||||||||
Sbjct: 659842 gcgtggcggcgcggcggccg 659823
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>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 475    gcccgacggtgccccggtgc 494
              ||||||||||||||||||||
Sbjct: 109637 gcccgacggtgccccggtgc 109656
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    gcgcggcggccgaagccgcg 286
              ||||||||||||||||||||
Sbjct: 454048 gcgcggcggccgaagccgcg 454067
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>gb|AE005966.1| Caulobacter crescentus CB15 section 292 of 359 of the complete genome
          Length = 11218

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  ccagggccggcgcggcggcg 166
            ||||||||||||||||||||
Sbjct: 7793 ccagggccggcgcggcggcg 7774
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 269     gcggcggccgaagccgcggt 288
               ||||||||||||||||||||
Sbjct: 2239297 gcggcggccgaagccgcggt 2239316
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 413      gacttccactccctcctcgagcgcgagatcaaccgc 448
                ||||||| |||||||||||||| |||| | ||||||
Sbjct: 10191140 gacttcccctccctcctcgagcacgagcttaaccgc 10191175
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 157     cgcggcggcgtggcgctcccgcgc 180
               ||||||||||| ||||||||||||
Sbjct: 3781604 cgcggcggcgtcgcgctcccgcgc 3781581



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 157     cgcggcggcgtggcgctcccgcgc 180
               ||||||||||| ||||||||||||
Sbjct: 3300590 cgcggcggcgtcgcgctcccgcgc 3300613
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 55       caactgacgaagcgccacaccacc 78
                |||||||||||| |||||||||||
Sbjct: 19531563 caactgacgaagagccacaccacc 19531586
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>emb|AL606630.3|OSJN00041 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0046P18,
             complete sequence
          Length = 140780

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 413   gacttccactccctcctcgagcgcgagatcaaccgc 448
             ||||||| |||||||||||||| |||| | ||||||
Sbjct: 62551 gacttcccctccctcctcgagcacgagcttaaccgc 62586
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>emb|AL731578.2|OSJN00229 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017P10,
             complete sequence
          Length = 175563

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 413   gacttccactccctcctcgagcgcgagatcaaccgc 448
             ||||||| |||||||||||||| |||| | ||||||
Sbjct: 15355 gacttcccctccctcctcgagcacgagcttaaccgc 15390
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>gb|AE004861.1| Pseudomonas aeruginosa PAO1, section 422 of 529 of the complete
            genome
          Length = 10466

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  gcggcgcggcggccgaagcc 283
            ||||||||||||||||||||
Sbjct: 6606 gcggcgcggcggccgaagcc 6587
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 156     gcgcggcggcgtggcgctcc 175
               ||||||||||||||||||||
Sbjct: 1359425 gcgcggcggcgtggcgctcc 1359444
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>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0476H10
          Length = 151703

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 55     caactgacgaagcgccacaccacc 78
              |||||||||||| |||||||||||
Sbjct: 149090 caactgacgaagagccacaccacc 149113
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 263     ggcggcgcggcggccgaagc 282
               ||||||||||||||||||||
Sbjct: 1123312 ggcggcgcggcggccgaagc 1123293
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>dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0015I14
          Length = 150650

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 157   cgcggcggcgtggcgctcccgcgc 180
             ||||||||||| ||||||||||||
Sbjct: 87953 cgcggcggcgtcgcgctcccgcgc 87976
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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0015E04
          Length = 152046

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 157   cgcggcggcgtggcgctcccgcgc 180
             ||||||||||| ||||||||||||
Sbjct: 39558 cgcggcggcgtcgcgctcccgcgc 39535
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>dbj|BS000009.1| Pan troglodytes chromosome 22 clone:PTB-118J15, map 22, complete
              sequences
          Length = 199914

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    gtagcagcatggactccagg 151
              ||||||||||||||||||||
Sbjct: 101834 gtagcagcatggactccagg 101815
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>dbj|AK102681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102J07, full
            insert sequence
          Length = 2892

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 55   caactgacgaagcgccacaccacc 78
            |||||||||||| |||||||||||
Sbjct: 1434 caactgacgaagagccacaccacc 1411
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>dbj|AK099635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059J21, full
           insert sequence
          Length = 1665

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 157 cgcggcggcgtggcgctcccgcgc 180
           ||||||||||| ||||||||||||
Sbjct: 176 cgcggcggcgtcgcgctcccgcgc 199
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 263     ggcggcgcggcggccgaagc 282
               ||||||||||||||||||||
Sbjct: 2723173 ggcggcgcggcggccgaagc 2723154
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>gb|AF130249.1|AF130249 Homo sapiens PAC 126N20 derived from chromosome 21p11.2, complete
             sequence, containing STCH and an unknown gene
          Length = 97083

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   gtagcagcatggactccagg 151
             ||||||||||||||||||||
Sbjct: 75726 gtagcagcatggactccagg 75707
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 267     gcgcggcggccgaagccgcggtccgcgccctc 298
               ||||||||||||||||||| |  |||||||||
Sbjct: 2731015 gcgcggcggccgaagccgccgcgcgcgccctc 2731046
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 154     cggcgcggcggcgtggcgct 173
               ||||||||||||||||||||
Sbjct: 3667182 cggcgcggcggcgtggcgct 3667163


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,264,888
Number of Sequences: 3902068
Number of extensions: 3264888
Number of successful extensions: 84416
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80047
Number of HSP's gapped (non-prelim): 4359
length of query: 590
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 567
effective length of database: 17,143,297,704
effective search space: 9720249798168
effective search space used: 9720249798168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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