ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart40g08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK110292.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-G01, full insert sequence Length = 1588 Score = 155 bits (78), Expect = 2e-34 Identities = 203/244 (83%), Gaps = 3/244 (1%) Strand = Plus / Plus Query: 268 tggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatc 327 ||||||||||| ||| |||| |||| ||||||||||||||||| |||||||||||||| | Sbjct: 290 tggtgccggcggtgtacgtgttgggcgactcgacgctggacgtcggcaacaacaaccacc 349 Query: 328 tgccggggaaggacgtgcccaaggccaacgagcccttctacggcatcgacttccccggcg 387 |||||||||| ||||| || | ||||||| |||||| |||||||||||||||||| | Sbjct: 350 tgccggggaaagacgtccctagggccaacaagccctactacggcatcgacttccc---tg 406 Query: 388 gcgcccgggccaccgggaggttcagcaacggctacaacatcgccgacttcgtcgcgatgc 447 || || | ||||||| | ||||||||||||| |||| |||||||| ||| || | | Sbjct: 407 gctccaagcccaccggacgcttcagcaacggcttcaacgccgccgactacgttgcaaaga 466 Query: 448 atctggggttcgagaggagccctctggcttacctggtgctgaaatcacgcaactatctca 507 ||||||| ||||| | |||||||| ||| || ||||| || ||| |||||||||||||| Sbjct: 467 atctgggtttcgacaagagccctccggcctatctggtactcaaagcacgcaactatctcg 526 Query: 508 tccc 511 |||| Sbjct: 527 tccc 530
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 133 bits (67), Expect = 6e-28 Identities = 103/115 (89%) Strand = Plus / Minus Query: 268 tggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatc 327 ||||||||||| ||| |||| |||| ||||||||||||||||| |||||||||||||| | Sbjct: 30314207 tggtgccggcggtgtacgtgttgggcgactcgacgctggacgtcggcaacaacaaccacc 30314148 Query: 328 tgccggggaaggacgtgcccaaggccaacgagcccttctacggcatcgacttccc 382 |||||||||| ||||| || | ||||||| |||||| |||||||||||||||||| Sbjct: 30314147 tgccggggaaagacgtccctagggccaacaagccctactacggcatcgacttccc 30314093 Score = 83.8 bits (42), Expect = 5e-13 Identities = 93/110 (84%) Strand = Plus / Minus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatct 328 |||| ||||| ||||||||||||| ||||||||||||||||| |||||||||||| | || Sbjct: 30323882 ggtggcggcggtgttcgtgctgggtgactcgacgctggacgtcggcaacaacaactacct 30323823 Query: 329 gccggggaaggacgtgcccaaggccaacgagcccttctacggcatcgact 378 || || ||||| ||| || ||||||| |||| | | |||||||||||| Sbjct: 30323822 ccccggcaaggatgtgttcagggccaacaagccgtacaacggcatcgact 30323773 Score = 48.1 bits (24), Expect = 0.029 Identities = 54/64 (84%) Strand = Plus / Minus Query: 448 atctggggttcgagaggagccctctggcttacctggtgctgaaatcacgcaactatctca 507 ||||||| ||||| | |||||||| ||| || ||||| || ||| |||||||||||||| Sbjct: 30313932 atctgggtttcgacaagagccctccggcctatctggtactcaaagcacgcaactatctcg 30313873 Query: 508 tccc 511 |||| Sbjct: 30313872 tccc 30313869 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Minus Query: 408 ttcagcaacggctacaacatcgccgacttc 437 |||||||| ||||||||| ||||||||||| Sbjct: 30323746 ttcagcaatggctacaacgtcgccgacttc 30323717 Score = 40.1 bits (20), Expect = 7.2 Identities = 35/40 (87%) Strand = Plus / Minus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggac 308 |||||||||| || ||||| | |||||||||||| ||||| Sbjct: 25492459 ggtgccggcggtgatcgtgttcggggactcgacggtggac 25492420
>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548E04 Length = 138037 Score = 133 bits (67), Expect = 6e-28 Identities = 103/115 (89%) Strand = Plus / Minus Query: 268 tggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatc 327 ||||||||||| ||| |||| |||| ||||||||||||||||| |||||||||||||| | Sbjct: 60802 tggtgccggcggtgtacgtgttgggcgactcgacgctggacgtcggcaacaacaaccacc 60743 Query: 328 tgccggggaaggacgtgcccaaggccaacgagcccttctacggcatcgacttccc 382 |||||||||| ||||| || | ||||||| |||||| |||||||||||||||||| Sbjct: 60742 tgccggggaaagacgtccctagggccaacaagccctactacggcatcgacttccc 60688 Score = 83.8 bits (42), Expect = 5e-13 Identities = 93/110 (84%) Strand = Plus / Minus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatct 328 |||| ||||| ||||||||||||| ||||||||||||||||| |||||||||||| | || Sbjct: 70477 ggtggcggcggtgttcgtgctgggtgactcgacgctggacgtcggcaacaacaactacct 70418 Query: 329 gccggggaaggacgtgcccaaggccaacgagcccttctacggcatcgact 378 || || ||||| ||| || ||||||| |||| | | |||||||||||| Sbjct: 70417 ccccggcaaggatgtgttcagggccaacaagccgtacaacggcatcgact 70368 Score = 48.1 bits (24), Expect = 0.029 Identities = 54/64 (84%) Strand = Plus / Minus Query: 448 atctggggttcgagaggagccctctggcttacctggtgctgaaatcacgcaactatctca 507 ||||||| ||||| | |||||||| ||| || ||||| || ||| |||||||||||||| Sbjct: 60527 atctgggtttcgacaagagccctccggcctatctggtactcaaagcacgcaactatctcg 60468 Query: 508 tccc 511 |||| Sbjct: 60467 tccc 60464 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Minus Query: 408 ttcagcaacggctacaacatcgccgacttc 437 |||||||| ||||||||| ||||||||||| Sbjct: 70341 ttcagcaatggctacaacgtcgccgacttc 70312
>ref|XM_465038.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1397 Score = 77.8 bits (39), Expect = 3e-11 Identities = 68/77 (88%), Gaps = 3/77 (3%) Strand = Plus / Plus Query: 366 tacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggctacaac 425 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | Sbjct: 220 tacggcatcgacttccccggcggcaa---ggccaccggcaggttcagcaacggctacacc 276 Query: 426 atcgccgacttcgtcgc 442 || ||||||||| |||| Sbjct: 277 atggccgacttcatcgc 293
>dbj|AK101883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070K23, full insert sequence Length = 1397 Score = 77.8 bits (39), Expect = 3e-11 Identities = 68/77 (88%), Gaps = 3/77 (3%) Strand = Plus / Plus Query: 366 tacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggctacaac 425 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | Sbjct: 220 tacggcatcgacttccccggcggcaa---ggccaccggcaggttcagcaacggctacacc 276 Query: 426 atcgccgacttcgtcgc 442 || ||||||||| |||| Sbjct: 277 atggccgacttcatcgc 293
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 75.8 bits (38), Expect = 1e-10 Identities = 64/72 (88%), Gaps = 3/72 (4%) Strand = Plus / Plus Query: 366 tacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggctacaac 425 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | Sbjct: 11071011 tacggcatcgacttccccggcggcaa---ggccaccggcaggttcagcaacggctacacc 11071067 Query: 426 atcgccgacttc 437 || ||||||||| Sbjct: 11071068 atggccgacttc 11071079 Score = 63.9 bits (32), Expect = 5e-07 Identities = 67/78 (85%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 360 cccttctacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggc 419 ||||| |||||||||||||||||||||||| |||||||| ||| ||||||||||| Sbjct: 11093126 cccttttacggcatcgacttccccggcggcaat---gccaccggcagggtcagcaacggc 11093182 Query: 420 tacaacatcgccgacttc 437 |||| ||| ||||||||| Sbjct: 11093183 tacaccatggccgacttc 11093200 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgacttc 437 ||||||| ||||||||||| ||||||||| ||||||||||| Sbjct: 30985630 ccaccggaaggttcagcaatggctacaacgtcgccgacttc 30985590 Score = 48.1 bits (24), Expect = 0.029 Identities = 62/74 (83%), Gaps = 3/74 (4%) Strand = Plus / Plus Query: 360 cccttctacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggc 419 ||||| |||||||||||||||||||| ||| |||||||| ||| ||||||||||| Sbjct: 11101642 cccttttacggcatcgacttccccggtggcaat---gccaccggcagggtcagcaacggc 11101698 Query: 420 tacaacatcgccga 433 |||| ||| ||||| Sbjct: 11101699 tacaccatggccga 11101712 Score = 44.1 bits (22), Expect = 0.46 Identities = 58/70 (82%) Strand = Plus / Minus Query: 268 tggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatc 327 ||||||||||| ||| |||| | || ||||||||| ||||||| || |||||| | | | Sbjct: 30985747 tggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacc 30985688 Query: 328 tgccggggaa 337 |||||||||| Sbjct: 30985687 tgccggggaa 30985678 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Minus Query: 294 gactcgacgctggacgtgggcaacaacaac 323 ||||||||| | |||||||||||||||||| Sbjct: 27176375 gactcgacggttgacgtgggcaacaacaac 27176346 Score = 42.1 bits (21), Expect = 1.8 Identities = 48/57 (84%) Strand = Plus / Plus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaacca 325 |||| ||||| || ||||| | |||||||||||| ||||| ||| ||||||||||| Sbjct: 4944854 ggtgacggcggtgatcgtgttcggggactcgacggtggacacggggaacaacaacca 4944910
>dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_E11 Length = 133524 Score = 75.8 bits (38), Expect = 1e-10 Identities = 64/72 (88%), Gaps = 3/72 (4%) Strand = Plus / Plus Query: 366 tacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggctacaac 425 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | Sbjct: 53705 tacggcatcgacttccccggcggcaa---ggccaccggcaggttcagcaacggctacacc 53761 Query: 426 atcgccgacttc 437 || ||||||||| Sbjct: 53762 atggccgacttc 53773 Score = 63.9 bits (32), Expect = 5e-07 Identities = 67/78 (85%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 360 cccttctacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggc 419 ||||| |||||||||||||||||||||||| |||||||| ||| ||||||||||| Sbjct: 75820 cccttttacggcatcgacttccccggcggcaat---gccaccggcagggtcagcaacggc 75876 Query: 420 tacaacatcgccgacttc 437 |||| ||| ||||||||| Sbjct: 75877 tacaccatggccgacttc 75894 Score = 48.1 bits (24), Expect = 0.029 Identities = 62/74 (83%), Gaps = 3/74 (4%) Strand = Plus / Plus Query: 360 cccttctacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggc 419 ||||| |||||||||||||||||||| ||| |||||||| ||| ||||||||||| Sbjct: 84336 cccttttacggcatcgacttccccggtggcaat---gccaccggcagggtcagcaacggc 84392 Query: 420 tacaacatcgccga 433 |||| ||| ||||| Sbjct: 84393 tacaccatggccga 84406
>dbj|AK065261.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J21, full insert sequence Length = 1430 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Plus Query: 408 ttcagcaacggctacaacatcgccgacttcgtcgcgatgcatctggggttcgagaggagc 467 |||||||| ||||||||| ||||||||||| | || ||| | ||||||||| ||| |||| Sbjct: 249 ttcagcaatggctacaacgtcgccgacttcatagcaatgaagctggggttcaagaagagc 308 Query: 468 cctctggcttacctg 482 |||| |||||||||| Sbjct: 309 cctccggcttacctg 323
>ref|XM_506961.1| PREDICTED Oryza sativa (japonica cultivar-group), P0516G10.12-1 mRNA Length = 1637 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgacttcgtcgcgatgcatctggggt 456 ||||||| ||||||||||| ||||||||| ||||||||||| |||||| | |||| | Sbjct: 460 ccaccggaaggttcagcaatggctacaacgtcgccgacttcatcgcgaaactggtgggat 519 Query: 457 tcgagaggagccctctggcttacctg 482 || |||||||||| | |||||||||| Sbjct: 520 tcaagaggagcccgccggcttacctg 545 Score = 44.1 bits (22), Expect = 0.46 Identities = 58/70 (82%) Strand = Plus / Plus Query: 268 tggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatc 327 ||||||||||| ||| |||| | || ||||||||| ||||||| || |||||| | | | Sbjct: 343 tggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacc 402 Query: 328 tgccggggaa 337 |||||||||| Sbjct: 403 tgccggggaa 412
>ref|XM_467707.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1637 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgacttcgtcgcgatgcatctggggt 456 ||||||| ||||||||||| ||||||||| ||||||||||| |||||| | |||| | Sbjct: 459 ccaccggaaggttcagcaatggctacaacgtcgccgacttcatcgcgaaactggtgggat 518 Query: 457 tcgagaggagccctctggcttacctg 482 || |||||||||| | |||||||||| Sbjct: 519 tcaagaggagcccgccggcttacctg 544 Score = 44.1 bits (22), Expect = 0.46 Identities = 58/70 (82%) Strand = Plus / Plus Query: 268 tggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatc 327 ||||||||||| ||| |||| | || ||||||||| ||||||| || |||||| | | | Sbjct: 342 tggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacc 401 Query: 328 tgccggggaa 337 |||||||||| Sbjct: 402 tgccggggaa 411
>dbj|AK099325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033016K19, full insert sequence Length = 1637 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgacttcgtcgcgatgcatctggggt 456 ||||||| ||||||||||| ||||||||| ||||||||||| |||||| | |||| | Sbjct: 459 ccaccggaaggttcagcaatggctacaacgtcgccgacttcatcgcgaaactggtgggat 518 Query: 457 tcgagaggagccctctggcttacctg 482 || |||||||||| | |||||||||| Sbjct: 519 tcaagaggagcccgccggcttacctg 544 Score = 44.1 bits (22), Expect = 0.46 Identities = 58/70 (82%) Strand = Plus / Plus Query: 268 tggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatc 327 ||||||||||| ||| |||| | || ||||||||| ||||||| || |||||| | | | Sbjct: 342 tggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacc 401 Query: 328 tgccggggaa 337 |||||||||| Sbjct: 402 tgccggggaa 411
>dbj|AK070261.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042P13, full insert sequence Length = 1637 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgacttcgtcgcgatgcatctggggt 456 ||||||| ||||||||||| ||||||||| ||||||||||| |||||| | |||| | Sbjct: 460 ccaccggaaggttcagcaatggctacaacgtcgccgacttcatcgcgaaactggtgggat 519 Query: 457 tcgagaggagccctctggcttacctg 482 || |||||||||| | |||||||||| Sbjct: 520 tcaagaggagcccgccggcttacctg 545
>ref|XM_465039.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1182 Score = 63.9 bits (32), Expect = 5e-07 Identities = 67/78 (85%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 360 cccttctacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggc 419 ||||| |||||||||||||||||||||||| |||||||| ||| ||||||||||| Sbjct: 220 cccttttacggcatcgacttccccggcggcaat---gccaccggcagggtcagcaacggc 276 Query: 420 tacaacatcgccgacttc 437 |||| ||| ||||||||| Sbjct: 277 tacaccatggccgacttc 294
>dbj|AP003988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1057_D08 Length = 119557 Score = 63.9 bits (32), Expect = 5e-07 Identities = 67/78 (85%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 360 cccttctacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggc 419 ||||| |||||||||||||||||||||||| |||||||| ||| ||||||||||| Sbjct: 12305 cccttttacggcatcgacttccccggcggcaat---gccaccggcagggtcagcaacggc 12361 Query: 420 tacaacatcgccgacttc 437 |||| ||| ||||||||| Sbjct: 12362 tacaccatggccgacttc 12379 Score = 48.1 bits (24), Expect = 0.029 Identities = 62/74 (83%), Gaps = 3/74 (4%) Strand = Plus / Plus Query: 360 cccttctacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggc 419 ||||| |||||||||||||||||||| ||| |||||||| ||| ||||||||||| Sbjct: 20821 cccttttacggcatcgacttccccggtggcaat---gccaccggcagggtcagcaacggc 20877 Query: 420 tacaacatcgccga 433 |||| ||| ||||| Sbjct: 20878 tacaccatggccga 20891
>ref|XM_473495.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1104 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaac 323 ||||||||| ||||||||| | |||||||| ||| ||||||| |||||||||||| Sbjct: 87 ggtgccggccatgttcgtgttcggggactccacggtggacgtcggcaacaacaac 141
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaac 323 ||||||||| ||||||||| | |||||||| ||| ||||||| |||||||||||| Sbjct: 105514 ggtgccggccatgttcgtgttcggggactccacggtggacgtcggcaacaacaac 105460
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaac 323 ||||||||| ||||||||| | |||||||| ||| ||||||| |||||||||||| Sbjct: 28098289 ggtgccggccatgttcgtgttcggggactccacggtggacgtcggcaacaacaac 28098235
>ref|XM_467708.1| Oryza sativa (japonica cultivar-group), mRNA Length = 872 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgacttc 437 ||||||| ||||||||||| ||||||||| ||||||||||| Sbjct: 463 ccaccggaaggttcagcaatggctacaacgtcgccgacttc 503 Score = 44.1 bits (22), Expect = 0.46 Identities = 58/70 (82%) Strand = Plus / Plus Query: 268 tggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatc 327 ||||||||||| ||| |||| | || ||||||||| ||||||| || |||||| | | | Sbjct: 346 tggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacc 405 Query: 328 tgccggggaa 337 |||||||||| Sbjct: 406 tgccggggaa 415
>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0516G10 Length = 148937 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgacttc 437 ||||||| ||||||||||| ||||||||| ||||||||||| Sbjct: 40586 ccaccggaaggttcagcaatggctacaacgtcgccgacttc 40546 Score = 44.1 bits (22), Expect = 0.46 Identities = 58/70 (82%) Strand = Plus / Minus Query: 268 tggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatc 327 ||||||||||| ||| |||| | || ||||||||| ||||||| || |||||| | | | Sbjct: 40703 tggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacc 40644 Query: 328 tgccggggaa 337 |||||||||| Sbjct: 40643 tgccggggaa 40634
>dbj|AK111360.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-H05, full insert sequence Length = 888 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgacttc 437 ||||||| ||||||||||| ||||||||| ||||||||||| Sbjct: 463 ccaccggaaggttcagcaatggctacaacgtcgccgacttc 503 Score = 44.1 bits (22), Expect = 0.46 Identities = 58/70 (82%) Strand = Plus / Plus Query: 268 tggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatc 327 ||||||||||| ||| |||| | || ||||||||| ||||||| || |||||| | | | Sbjct: 346 tggtgccggcggtgtacgtgttcggcgactcgacggtggacgtcgggaacaaccagtacc 405 Query: 328 tgccggggaa 337 |||||||||| Sbjct: 406 tgccggggaa 415
>ref|XM_463040.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1104 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgact 435 ||||||| ||||||||||||||||||||| ||| ||||| Sbjct: 239 ccaccggcaggttcagcaacggctacaacttcgtcgact 277
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgact 435 ||||||| ||||||||||||||||||||| ||| ||||| Sbjct: 21161630 ccaccggcaggttcagcaacggctacaacttcgtcgact 21161668 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Minus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgactt 436 ||||||| ||||||||||| ||||||||| ||| |||||| Sbjct: 21123408 ccaccggcaggttcagcaatggctacaacttcgtcgactt 21123369 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Minus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatct 328 |||||||||| ||| |||||| || |||||| | ||||||||| ||||||||||| || Sbjct: 21089770 ggtgccggcggtgtacgtgctcggcgactcgctggcggacgtggggaacaacaaccacct 21089711 Query: 329 gc 330 || Sbjct: 21089710 gc 21089709 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 397 ccaccgggaggttcagcaacggctacaac 425 ||||||| ||||||||||| ||||||||| Sbjct: 21121122 ccaccggcaggttcagcaatggctacaac 21121094
>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete sequence Length = 174910 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgact 435 ||||||| ||||||||||||||||||||| ||| ||||| Sbjct: 17545 ccaccggcaggttcagcaacggctacaacttcgtcgact 17583
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgact 435 ||||||| ||||||||||||||||||||| ||| ||||| Sbjct: 21154659 ccaccggcaggttcagcaacggctacaacttcgtcgact 21154697 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Minus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgactt 436 ||||||| ||||||||||| ||||||||| ||| |||||| Sbjct: 21116437 ccaccggcaggttcagcaatggctacaacttcgtcgactt 21116398 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Minus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatct 328 |||||||||| ||| |||||| || |||||| | ||||||||| ||||||||||| || Sbjct: 21082799 ggtgccggcggtgtacgtgctcggcgactcgctggcggacgtggggaacaacaaccacct 21082740 Query: 329 gc 330 || Sbjct: 21082739 gc 21082738 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 397 ccaccgggaggttcagcaacggctacaac 425 ||||||| ||||||||||| ||||||||| Sbjct: 21114151 ccaccggcaggttcagcaatggctacaac 21114123
>ref|XM_475723.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1098 Score = 50.1 bits (25), Expect = 0.007 Identities = 48/55 (87%), Gaps = 3/55 (5%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggc 419 |||||||||||||||| ||||||||||| |||||||| | |||||||||||| Sbjct: 177 ctacggcatcgacttcgccggcggcgcc---gccaccggccgcttcagcaacggc 228
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04, complete sequence Length = 169073 Score = 50.1 bits (25), Expect = 0.007 Identities = 48/55 (87%), Gaps = 3/55 (5%) Strand = Plus / Minus Query: 365 ctacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggc 419 |||||||||||||||| ||||||||||| |||||||| | |||||||||||| Sbjct: 909 ctacggcatcgacttcgccggcggcgcc---gccaccggccgcttcagcaacggc 858
>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10, complete sequence Length = 143073 Score = 50.1 bits (25), Expect = 0.007 Identities = 48/55 (87%), Gaps = 3/55 (5%) Strand = Plus / Minus Query: 365 ctacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggc 419 |||||||||||||||| ||||||||||| |||||||| | |||||||||||| Sbjct: 124861 ctacggcatcgacttcgccggcggcgcc---gccaccggccgcttcagcaacggc 124810
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.007 Identities = 48/55 (87%), Gaps = 3/55 (5%) Strand = Plus / Minus Query: 365 ctacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggc 419 |||||||||||||||| ||||||||||| |||||||| | |||||||||||| Sbjct: 25484500 ctacggcatcgacttcgccggcggcgcc---gccaccggccgcttcagcaacggc 25484449 Score = 48.1 bits (24), Expect = 0.029 Identities = 45/52 (86%) Strand = Plus / Minus Query: 273 ccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaacc 324 |||||| |||||| | | || ||||||||||||||| |||||||||||||| Sbjct: 22849146 ccggcggtgttcgcgttcggcgactcgacgctggacccgggcaacaacaacc 22849095 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Plus Query: 269 ggtgccggcgatgttcgtgctgggggactc 298 ||||||||||||||||||| | |||||||| Sbjct: 20442214 ggtgccggcgatgttcgtgttcggggactc 20442243 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggc 389 |||||||||||||||| |||||||| Sbjct: 20442304 ctacggcatcgacttcgccggcggc 20442328
>dbj|AK061147.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D08, full insert sequence Length = 1315 Score = 50.1 bits (25), Expect = 0.007 Identities = 48/55 (87%), Gaps = 3/55 (5%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggc 419 |||||||||||||||| ||||||||||| |||||||| | |||||||||||| Sbjct: 241 ctacggcatcgacttcgccggcggcgcc---gccaccggccgcttcagcaacggc 292
>ref|XM_475407.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1083 Score = 48.1 bits (24), Expect = 0.029 Identities = 45/52 (86%) Strand = Plus / Plus Query: 273 ccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaacc 324 |||||| |||||| | | || ||||||||||||||| |||||||||||||| Sbjct: 121 ccggcggtgttcgcgttcggcgactcgacgctggacccgggcaacaacaacc 172
>ref|XM_465041.1| Oryza sativa (japonica cultivar-group), mRNA Length = 639 Score = 48.1 bits (24), Expect = 0.029 Identities = 62/74 (83%), Gaps = 3/74 (4%) Strand = Plus / Plus Query: 360 cccttctacggcatcgacttccccggcggcgcccgggccaccgggaggttcagcaacggc 419 ||||| |||||||||||||||||||| ||| |||||||| ||| ||||||||||| Sbjct: 553 cccttttacggcatcgacttccccggtggcaat---gccaccggcagggtcagcaacggc 609 Query: 420 tacaacatcgccga 433 |||| ||| ||||| Sbjct: 610 tacaccatggccga 623
>ref|XM_463033.1| Oryza sativa (japonica cultivar-group), mRNA Length = 342 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgactt 436 ||||||| ||||||||||| ||||||||| ||| |||||| Sbjct: 230 ccaccggcaggttcagcaatggctacaacttcgtcgactt 269
>gb|AC112159.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_C01, complete sequence Length = 114236 Score = 48.1 bits (24), Expect = 0.029 Identities = 45/52 (86%) Strand = Plus / Minus Query: 273 ccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaacc 324 |||||| |||||| | | || ||||||||||||||| |||||||||||||| Sbjct: 47850 ccggcggtgttcgcgttcggcgactcgacgctggacccgggcaacaacaacc 47799
>gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genomic sequence, complete sequence Length = 131250 Score = 48.1 bits (24), Expect = 0.029 Identities = 36/40 (90%) Strand = Plus / Minus Query: 397 ccaccgggaggttcagcaacggctacaacatcgccgactt 436 ||||||| ||||||||||| ||||||||| ||| |||||| Sbjct: 101164 ccaccggcaggttcagcaatggctacaacttcgtcgactt 101125 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Minus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatct 328 |||||||||| ||| |||||| || |||||| | ||||||||| ||||||||||| || Sbjct: 67526 ggtgccggcggtgtacgtgctcggcgactcgctggcggacgtggggaacaacaaccacct 67467 Query: 329 gc 330 || Sbjct: 67466 gc 67465 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 397 ccaccgggaggttcagcaacggctacaac 425 ||||||| ||||||||||| ||||||||| Sbjct: 98878 ccaccggcaggttcagcaatggctacaac 98850
>dbj|AK064681.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-A05, full insert sequence Length = 1385 Score = 48.1 bits (24), Expect = 0.029 Identities = 45/52 (86%) Strand = Plus / Plus Query: 273 ccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaacc 324 |||||| |||||| | | || ||||||||||||||| |||||||||||||| Sbjct: 161 ccggcggtgttcgcgttcggcgactcgacgctggacccgggcaacaacaacc 212
>ref|NM_191210.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggcgc 391 ||||||| ||||||||||||||||||| Sbjct: 171 ctacggcgtcgacttccccggcggcgc 197
>gb|BT018454.1| Zea mays clone EL01N0408D11.d mRNA sequence Length = 1429 Score = 46.1 bits (23), Expect = 0.12 Identities = 47/55 (85%) Strand = Plus / Plus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaac 323 |||||||||||||| |||| | || ||||| ||| ||||||||||| ||||||| Sbjct: 208 ggtgccggcgatgtacgtgttcggcgactccacggcggacgtgggcaccaacaac 262 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaac 425 ||||||| |||||||||||||| |||||| Sbjct: 336 ccaccggcaggttcagcaacgggtacaac 364
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggcgc 391 ||||||| ||||||||||||||||||| Sbjct: 31324960 ctacggcgtcgacttccccggcggcgc 31324986 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 291 ggggactcgacgctggacgtgggcaacaacaacc 324 |||||||| ||||| |||| |||||||||||||| Sbjct: 35599149 ggggactccacgctcgacgcgggcaacaacaacc 35599182 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 253 cggcgcggcggccggtggtgccggcg 278 |||||||||||||||||| ||||||| Sbjct: 20030439 cggcgcggcggccggtggcgccggcg 20030464 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggc 389 |||||||||||||||| |||||||| Sbjct: 30355390 ctacggcatcgacttcgccggcggc 30355414
>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0481E12 Length = 161563 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggcgc 391 ||||||| ||||||||||||||||||| Sbjct: 79243 ctacggcgtcgacttccccggcggcgc 79269
>ref|XM_463028.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1083 Score = 44.1 bits (22), Expect = 0.46 Identities = 52/62 (83%) Strand = Plus / Plus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaaccatct 328 |||||||||| ||| |||||| || |||||| | ||||||||| ||||||||||| || Sbjct: 87 ggtgccggcggtgtacgtgctcggcgactcgctggcggacgtggggaacaacaaccacct 146 Query: 329 gc 330 || Sbjct: 147 gc 148
>ref|NM_190450.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1140 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 291 ggggactcgacgctggacgtgggcaacaacaacc 324 |||||||| ||||| |||| |||||||||||||| Sbjct: 142 ggggactccacgctcgacgcgggcaacaacaacc 175
>ref|NM_193309.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 549 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 253 cggcgcggcggccggtggtgccggcg 278 |||||||||||||||||| ||||||| Sbjct: 86 cggcgcggcggccggtggcgccggcg 111
>gb|BT018449.1| Zea mays clone EL01N0407B08.d mRNA sequence Length = 1302 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Plus Query: 270 gtgccggcgatgttcgtgctgggggactcg 299 |||||||||||||||||| | ||||||||| Sbjct: 39 gtgccggcgatgttcgtgttcggggactcg 68 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggc 389 |||||||||||||||| |||||||| Sbjct: 128 ctacggcatcgacttcgccggcggc 152
>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01, complete sequence Length = 173074 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Plus Query: 269 ggtgccggcgatgttcgtgctgggggactc 298 ||||||||||||||||||| | |||||||| Sbjct: 113959 ggtgccggcgatgttcgtgttcggggactc 113988 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggc 389 |||||||||||||||| |||||||| Sbjct: 114049 ctacggcatcgacttcgccggcggc 114073
>dbj|AP004361.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24 Length = 148362 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 253 cggcgcggcggccggtggtgccggcg 278 |||||||||||||||||| ||||||| Sbjct: 133348 cggcgcggcggccggtggcgccggcg 133373
>dbj|AP004233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0065J17 Length = 139014 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 253 cggcgcggcggccggtggtgccggcg 278 |||||||||||||||||| ||||||| Sbjct: 28401 cggcgcggcggccggtggcgccggcg 28426
>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446G04 Length = 143515 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 291 ggggactcgacgctggacgtgggcaacaacaacc 324 |||||||| ||||| |||| |||||||||||||| Sbjct: 129336 ggggactccacgctcgacgcgggcaacaacaacc 129369
>dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460C04 Length = 189043 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 291 ggggactcgacgctggacgtgggcaacaacaacc 324 |||||||| ||||| |||| |||||||||||||| Sbjct: 2486 ggggactccacgctcgacgcgggcaacaacaacc 2519
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Minus Query: 294 gactcgacgctggacgtgggcaacaacaac 323 ||||||||| | |||||||||||||||||| Sbjct: 72824 gactcgacggttgacgtgggcaacaacaac 72795
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Minus Query: 294 gactcgacgctggacgtgggcaacaacaac 323 ||||||||| | |||||||||||||||||| Sbjct: 27046 gactcgacggttgacgtgggcaacaacaac 27017
>dbj|AK110526.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-167-H10, full insert sequence Length = 847 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 253 cggcgcggcggccggtggtgccggcg 278 |||||||||||||||||| ||||||| Sbjct: 170 cggcgcggcggccggtggcgccggcg 195
>dbj|AK100958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140K23, full insert sequence Length = 1556 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Plus Query: 269 ggtgccggcgatgttcgtgctgggggactc 298 ||||||||||||||||||| | |||||||| Sbjct: 205 ggtgccggcgatgttcgtgttcggggactc 234 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggc 389 |||||||||||||||| |||||||| Sbjct: 295 ctacggcatcgacttcgccggcggc 319
>dbj|AK064727.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A02, full insert sequence Length = 1381 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 291 ggggactcgacgctggacgtgggcaacaacaacc 324 |||||||| ||||| |||| |||||||||||||| Sbjct: 186 ggggactccacgctcgacgcgggcaacaacaacc 219
>ref|XM_464400.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1310 Score = 42.1 bits (21), Expect = 1.8 Identities = 48/57 (84%) Strand = Plus / Plus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaacca 325 |||| ||||| || ||||| | |||||||||||| ||||| ||| ||||||||||| Sbjct: 170 ggtgacggcggtgatcgtgttcggggactcgacggtggacacggggaacaacaacca 226
>ref|XM_463032.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1202 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaac 425 ||||||| ||||||||||| ||||||||| Sbjct: 215 ccaccggcaggttcagcaatggctacaac 243
>ref|NM_191862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggc 389 |||||||||||||||| |||||||| Sbjct: 174 ctacggcatcgacttcgccggcggc 198
>ref|NM_004474.2| Homo sapiens forkhead box D2 (FOXD2), mRNA Length = 4689 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcgcccgggccaccggg 404 ||||||||||||||||||||| Sbjct: 1458 ggcggcgcccgggccaccggg 1438
>emb|AL607122.20| Human DNA sequence from clone RP11-511I2 on chromosome 1 Contains the 3' end of the gene for UMP-CMP kinase (UMP-CMPK), a novel gene, the FOXE3 gene for forkhead box E3, a novel gene (MGC12982), the FOXD2 gene for forkhead box D2 and three CpG islands, complete sequence Length = 106239 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcgcccgggccaccggg 404 ||||||||||||||||||||| Sbjct: 95474 ggcggcgcccgggccaccggg 95454
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 259 ggcggccggtggtgccggcga 279 ||||||||||||||||||||| Sbjct: 94050 ggcggccggtggtgccggcga 94030
>emb|CR616789.1| full-length cDNA clone CS0DJ014YA01 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1624 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 ggcggcgcccgggccaccggg 404 ||||||||||||||||||||| Sbjct: 156 ggcggcgcccgggccaccggg 176
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 tccccggcggcgcccgggcca 399 ||||||||||||||||||||| Sbjct: 297220 tccccggcggcgcccgggcca 297200
>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0042A10 Length = 146840 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggc 389 |||||||||||||||| |||||||| Sbjct: 143709 ctacggcatcgacttcgccggcggc 143733
>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456A01 Length = 143710 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggc 389 |||||||||||||||| |||||||| Sbjct: 41117 ctacggcatcgacttcgccggcggc 41141
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09 Length = 132729 Score = 42.1 bits (21), Expect = 1.8 Identities = 48/57 (84%) Strand = Plus / Plus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaacca 325 |||| ||||| || ||||| | |||||||||||| ||||| ||| ||||||||||| Sbjct: 15980 ggtgacggcggtgatcgtgttcggggactcgacggtggacacggggaacaacaacca 16036
>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_F01 Length = 113755 Score = 42.1 bits (21), Expect = 1.8 Identities = 48/57 (84%) Strand = Plus / Plus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaacca 325 |||| ||||| || ||||| | |||||||||||| ||||| ||| ||||||||||| Sbjct: 89593 ggtgacggcggtgatcgtgttcggggactcgacggtggacacggggaacaacaacca 89649
>dbj|AK070980.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073A07, full insert sequence Length = 1417 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 397 ccaccgggaggttcagcaacggctacaac 425 ||||||| ||||||||||| ||||||||| Sbjct: 274 ccaccggcaggttcagcaatggctacaac 302
>dbj|AK070946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074K21, full insert sequence Length = 2149 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 ctacggcatcgacttccccggcggc 389 |||||||||||||||| |||||||| Sbjct: 270 ctacggcatcgacttcgccggcggc 294
>dbj|AK060691.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-C02, full insert sequence Length = 1310 Score = 42.1 bits (21), Expect = 1.8 Identities = 48/57 (84%) Strand = Plus / Plus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggacgtgggcaacaacaacca 325 |||| ||||| || ||||| | |||||||||||| ||||| ||| ||||||||||| Sbjct: 170 ggtgacggcggtgatcgtgttcggggactcgacggtggacacggggaacaacaacca 226
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 cttctacggcatcgacttccc 382 ||||||||||||||||||||| Sbjct: 662061 cttctacggcatcgacttccc 662081
>gb|AF042832.1|AF042832 Homo sapiens forkhead-related transcription factor FREAC-9 (FKHL17) mRNA, complete cds Length = 4259 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcgcccgggccaccggg 404 ||||||||||||||||||||| Sbjct: 1466 ggcggcgcccgggccaccggg 1446
>emb|CR855986.1| Paramecium tetraurelia macronuclear, putative gene for actin 6, isoform 2, (actin-related protein), complete gene Length = 1500 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 ctggtgctgaaatcacgcaa 499 |||||||||||||||||||| Sbjct: 709 ctggtgctgaaatcacgcaa 728
>gb|AC122280.4| Mus musculus BAC clone RP23-239I12 from 17, complete sequence Length = 238767 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 agttagtgccattggtgcta 249 |||||||||||||||||||| Sbjct: 143412 agttagtgccattggtgcta 143431
>ref|XM_544306.1| PREDICTED: Canis familiaris similar to Protocadherin beta 15 precursor (PCDH-beta15) (LOC487178), mRNA Length = 2388 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 tggacgtgggcaacaacaac 323 |||||||||||||||||||| Sbjct: 479 tggacgtgggcaacaacaac 498
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 cgacttcgtcgcgatgcatctggg 454 |||||||||||||| ||||||||| Sbjct: 655072 cgacttcgtcgcgacgcatctggg 655049
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 gcggccggtggtgccggcga 279 |||||||||||||||||||| Sbjct: 2330514 gcggccggtggtgccggcga 2330495
>ref|XM_230303.3| PREDICTED: Rattus norvegicus exostoses (multiple) 2 (predicted) (Ext2_predicted), mRNA Length = 2376 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 ctctggcttacctggtgctg 488 |||||||||||||||||||| Sbjct: 64 ctctggcttacctggtgctg 83
>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0523F01 Length = 146419 Score = 40.1 bits (20), Expect = 7.2 Identities = 35/40 (87%) Strand = Plus / Minus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggac 308 |||||||||| || ||||| | |||||||||||| ||||| Sbjct: 10776 ggtgccggcggtgatcgtgttcggggactcgacggtggac 10737
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 tctcgtggtggtgcttctgggcct 223 |||||| ||||||||||||||||| Sbjct: 1621013 tctcgttgtggtgcttctgggcct 1620990
>dbj|AK058562.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D11, full insert sequence Length = 1388 Score = 40.1 bits (20), Expect = 7.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 269 ggtgccggcgatgttcgtgctgggggactcgacgctggac 308 |||||||||| || ||||| | |||||||||||| ||||| Sbjct: 218 ggtgccggcggtgatcgtgttcggggactcgacggtggac 257
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 gcgcggcggccggtggtgcc 274 |||||||||||||||||||| Sbjct: 1117049 gcgcggcggccggtggtgcc 1117068
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 gcggcggccggtggtgccgg 276 |||||||||||||||||||| Sbjct: 1971379 gcggcggccggtggtgccgg 1971398
>gb|AC161251.3| Mus musculus BAC clone RP24-174C13 from chromosome 3, complete sequence Length = 151247 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ctatacacaaggttaccttc 162 |||||||||||||||||||| Sbjct: 76591 ctatacacaaggttaccttc 76610 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,452,611 Number of Sequences: 3902068 Number of extensions: 3452611 Number of successful extensions: 64889 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63708 Number of HSP's gapped (non-prelim): 1177 length of query: 530 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 507 effective length of database: 17,143,297,704 effective search space: 8691651935928 effective search space used: 8691651935928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
