ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart40g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein) 110 2e-24
2DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-re... 31 2.1
3RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (R... 31 2.8
4RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RD... 31 2.8
5DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re... 30 3.6

>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)|
          Length = 262

 Score =  110 bits (276), Expect = 2e-24
 Identities = 75/163 (46%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
 Frame = +2

Query: 101 MEDERSTQSYQGAEA-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 268
           MEDERSTQSYQG EA +QVEVTDR                      VTGM          
Sbjct: 1   MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60

Query: 269 -XXXXXDGEKKETLFSKLHRXXXXXXXXXXXXXXXXVIDENXXXXXXXXXXXXXXXXXXX 445
                 DGEKKETLFSKLHR                VID+N                   
Sbjct: 61  KKEEHEDGEKKETLFSKLHRSSSSSSSSSDEEEEE-VIDDNGEVIKRKKKKGLKEKLQGK 119

Query: 446 XXXXXDNEAEHVTGLPAPMAPASVQT---HHDTDVVVEKIDGD 565
                D E EHVTGLPAP APASVQT   HHDTDVVVEKIDGD
Sbjct: 120 LPGHKDTEGEHVTGLPAPAAPASVQTHGGHHDTDVVVEKIDGD 162



to top

>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)|
           (DRF2) (mDia3)
          Length = 1098

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 173 GPCPSPPPDRPQLPGMTGCSSHPP 102
           GPCP PPP  P  P + G    PP
Sbjct: 556 GPCPPPPPPPPPPPPLPGVVPPPP 579



to top

>RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein|
           VP1)
          Length = 878

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
 Frame = -3

Query: 97  RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFLNP 2
           R+ S  LK    T+GS +K+ +S   DYW+L+CG L P
Sbjct: 282 RELSALLKQGAGTKGSNKKKLLSMLSDYWYLSCGLLFP 319



to top

>RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein|
           VP1)
          Length = 881

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
 Frame = -3

Query: 97  RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFLNP 2
           R+ S  LK    T+GS +K+ +S   DYW+L+CG L P
Sbjct: 283 RELSTLLKQGAGTKGSNKKKLLSMLSDYWYLSCGLLFP 320



to top

>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -2

Query: 170 PCPSPPPDRPQLPGMTGCSSHPP 102
           P P PPP  P LPG T  S  PP
Sbjct: 601 PPPPPPPPPPPLPGGTAISPPPP 623


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,977,197
Number of Sequences: 219361
Number of extensions: 620496
Number of successful extensions: 3274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3195
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top